genome.fa.s11.2.7.7.80.10.50.1000.35.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  35  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10489292--10489403	51	2.2	51	93	0	188	28	24	16	31	1.96
10493873--10493906	11	3.1	11	95	0	59	0	50	0	50	1.00
10494392--10494425	6	5.5	6	93	6	59	32	0	14	52	1.42
10494775--10494906	64	2.1	64	83	11	164	37	4	2	56	1.33
10494837--10494896	20	3.0	18	76	21	57	35	5	1	58	1.30
10495256--10495350	38	2.5	37	78	13	97	36	12	1	49	1.48
10500306--10500341	16	2.2	16	95	0	63	25	19	13	41	1.88
10503038--10503076	20	2.0	20	89	0	60	41	2	2	53	1.28
10517948--10518000	21	2.5	21	100	0	106	71	0	28	0	0.86
10517953--10518008	21	2.9	18	87	12	69	73	0	26	0	0.84
10517948--10518007	11	5.6	11	80	20	74	71	0	28	0	0.86
10518820--10518928	37	2.8	38	79	5	112	25	14	25	33	1.94
10523462--10523490	5	5.8	5	100	0	58	17	0	0	82	0.66
10525777--10525818	18	2.4	18	80	15	52	35	7	2	54	1.41
10534437--10534502	30	2.1	34	86	11	95	51	7	0	40	1.30
10540843--10540882	13	3.1	13	81	0	53	30	7	25	37	1.83
10546607--10546649	9	4.8	9	77	11	52	51	0	2	46	1.13
10558132--10558198	9	7.4	9	85	6	91	44	22	7	25	1.78
10558132--10558198	27	2.5	27	95	0	116	44	22	7	25	1.78
10566142--10566329	92	2.0	92	90	2	297	26	11	14	47	1.79
10570053--10570085	14	2.3	15	89	5	50	33	6	0	60	1.21
10572246--10572369	64	1.9	64	80	0	140	21	19	22	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10574641--10574671	14	2.2	14	100	0	62	19	0	19	61	1.35
10574642--10574700	21	2.8	20	74	5	55	20	1	20	57	1.49
10580276--10580776	226	2.2	226	82	4	621	34	9	18	36	1.85
10580276--10580814	231	2.4	226	81	4	645	34	9	18	36	1.84
10588567--10589288	365	2.0	365	97	0	1363	32	13	15	37	1.87
10590873--10590954	41	2.0	41	100	0	164	24	9	17	48	1.76
10598468--10598493	3	8.7	3	100	0	52	0	34	0	65	0.93
10598869--10598913	2	22.5	2	100	0	90	51	0	48	0	1.00
10601283--10601329	25	1.9	25	91	4	78	59	0	2	38	1.09
10611427--10611487	2	30.5	2	96	0	113	49	0	49	1	1.10
10614306--10614718	176	2.3	180	85	5	534	26	14	11	47	1.77
10615949--10616011	6	10.5	6	87	0	81	36	0	61	1	1.05
10622532--10622591	21	2.8	22	75	7	70	36	25	20	18	1.94
10623717--10623773	28	2.0	30	89	6	91	50	7	1	40	1.40
10625396--10625430	13	2.7	13	91	8	54	68	2	0	28	1.04
10625436--10625468	13	2.4	14	90	5	50	75	9	3	12	1.14
10626279--10626310	6	5.3	6	100	0	64	84	0	0	15	0.63
10629370--10629400	14	2.2	14	94	0	53	48	12	0	38	1.42
10637248--10637535	144	2.0	142	94	1	504	39	13	22	24	1.90
10638478--10638515	15	2.4	17	87	12	55	28	5	55	10	1.56
10638998--10639104	54	2.0	54	98	0	205	29	16	20	32	1.95
10639616--10639663	25	1.9	25	86	0	69	43	10	8	37	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10640220--10640265	3	15.3	3	100	0	92	0	32	0	67	0.91
10641933--10642087	43	3.7	41	78	11	163	23	18	28	29	1.98
10641932--10642087	84	1.9	84	84	10	212	23	17	28	29	1.97
10647080--10647265	84	2.3	82	87	5	261	25	14	11	48	1.77
10648594--10648639	2	23.0	2	95	0	83	47	0	52	0	1.00
10648693--10648723	2	15.5	2	100	0	62	48	0	51	0	1.00
10651476--10651516	6	6.7	6	97	2	73	14	0	0	85	0.60
10652434--10652473	17	2.4	17	95	0	71	47	0	15	37	1.45
10655487--10655578	41	2.3	41	98	1	177	31	22	7	38	1.82
10662120--10662187	34	2.0	34	97	0	127	42	25	11	20	1.86
10663726--10663769	11	3.7	12	82	17	56	52	2	0	45	1.13
10663883--10663955	30	2.5	29	78	8	76	42	2	1	53	1.23
10664309--10664341	16	2.0	17	88	5	50	45	0	0	54	0.99
10667087--10667118	12	2.7	12	95	0	55	25	0	40	34	1.56
10667087--10667118	15	2.1	15	94	0	55	25	0	40	34	1.56
10668032--10668261	80	2.8	82	82	3	284	44	9	5	40	1.59
10668311--10668375	23	2.9	22	77	11	62	56	4	1	36	1.29
10668802--10668846	16	2.6	19	80	16	53	68	0	0	31	0.89
10674832--10674870	20	1.9	21	89	5	62	12	28	0	58	1.34
10675416--10675596	98	1.8	100	90	2	294	43	9	17	29	1.81
10677496--10677558	31	2.1	28	82	8	72	20	1	4	73	1.11
10685466--10685510	22	2.1	21	83	4	54	35	0	4	60	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10687048--10687078	4	7.8	4	100	0	62	25	0	48	25	1.52
10690510--10690603	45	2.1	45	80	9	104	58	2	8	30	1.40
10690989--10691066	20	3.9	20	75	15	63	32	6	0	61	1.21
10701980--10702044	25	2.6	25	87	2	103	38	26	13	21	1.91
10708234--10708283	12	4.1	12	76	5	55	46	6	16	32	1.71
10712231--10712256	4	6.5	4	100	0	52	73	0	26	0	0.84
10715865--10715900	17	2.1	18	89	5	56	63	2	5	27	1.30
10717233--10717362	64	2.0	64	98	0	251	55	13	11	20	1.68
10729543--10729627	36	2.3	36	93	2	143	27	29	17	25	1.98
10729900--10730436	125	4.3	125	92	0	842	33	17	18	30	1.94
10737440--10737479	3	13.0	3	94	5	71	0	35	0	65	0.93
10738938--10738974	19	1.9	19	100	0	74	32	8	32	27	1.86
10740882--10740932	24	2.2	23	85	3	66	52	5	5	35	1.50
10742468--10742496	6	5.0	6	91	8	51	68	0	0	31	0.89
10743589--10743631	3	14.3	3	100	0	86	32	0	0	67	0.91
10748036--10748078	19	2.4	19	84	7	54	46	2	2	48	1.27
10748542--10748577	3	12.0	3	100	0	72	66	0	0	33	0.92
10752601--10752626	5	5.2	5	100	0	52	80	0	19	0	0.71
10756430--10756521	46	2.0	46	95	0	166	32	17	30	19	1.95
10762701--10762776	32	2.4	32	77	4	82	21	27	25	26	1.99
10763845--10763894	18	2.8	18	88	8	75	20	26	34	20	1.96
10769985--10770027	21	2.1	21	86	4	61	48	2	2	46	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10770767--10770814	5	9.8	5	95	4	89	79	0	0	20	0.74
10772504--10772536	6	5.7	6	92	3	50	3	0	24	72	0.98
10775528--10775564	19	1.9	19	100	0	74	48	2	0	48	1.15
10775517--10775573	24	2.3	24	84	3	69	45	3	1	49	1.29
10785420--10785446	14	1.9	14	100	0	54	37	7	0	55	1.28
10785517--10785542	7	3.7	7	100	0	52	73	0	0	26	0.84
10786640--10786710	34	2.1	34	100	0	142	47	0	8	43	1.33
10789374--10789403	16	1.9	16	93	6	53	66	0	26	6	1.16
10799617--10799672	27	2.2	26	87	9	80	21	23	28	26	1.99
10802730--10803044	62	5.1	62	94	0	540	38	6	6	49	1.54
10802978--10803075	48	2.1	47	90	1	151	32	7	9	51	1.61
10804263--10804297	14	2.5	14	95	0	61	40	5	20	34	1.76
10806333--10806365	17	1.9	17	88	11	50	0	33	0	66	0.92
10810526--10810555	6	5.0	6	100	0	60	16	0	0	83	0.65
10811390--10811440	21	2.3	23	83	12	63	35	1	7	54	1.40
10818648--10818704	18	3.2	18	94	0	96	29	17	26	26	1.97
10822854--10822941	26	3.2	26	72	6	77	29	3	6	60	1.39
10832454--10832480	6	4.5	6	100	0	54	48	0	0	51	1.00
10836609--10836645	9	3.9	9	86	13	56	35	2	0	62	1.10
10837561--10837695	31	4.4	31	71	19	113	42	12	18	26	1.86
10837553--10837665	60	1.9	60	88	0	172	46	12	16	24	1.82
10837561--10837755	91	2.1	91	83	9	238	43	12	16	26	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10841370--10841427	25	2.3	25	81	0	62	39	15	6	37	1.74
10841473--10841503	7	4.3	7	95	4	53	67	0	0	32	0.91
10851541--10851608	5	13.2	5	83	13	77	39	0	1	58	1.07
10851560--10851609	8	5.7	10	76	23	51	44	0	0	56	0.99
10852694--10852752	27	2.2	28	81	9	77	23	0	30	45	1.53
10853016--10853048	17	1.9	17	88	11	50	42	3	18	36	1.66
10855136--10855254	61	2.0	61	88	3	177	31	12	14	42	1.83
10871912--10871970	27	2.2	27	93	0	100	37	11	16	33	1.86
10881137--10881171	13	2.7	13	100	0	70	42	11	8	37	1.72
10887451--10887503	21	2.5	21	96	0	97	41	3	0	54	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144