genome.fa.s11.2.7.7.80.10.50.1000.120.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  120  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37180807--37180852	23	2.0	24	83	12	60	67	2	4	26	1.21
37197149--37197181	16	2.1	16	100	0	66	18	45	12	24	1.83
37202701--37202742	21	2.0	21	100	0	84	33	19	9	38	1.84
37206270--37206454	96	1.9	96	80	0	217	23	29	20	26	1.99
37212115--37212319	48	4.2	48	82	0	221	22	28	21	26	1.99
37214082--37214106	13	1.9	13	100	0	50	20	48	16	16	1.82
37214046--37214168	49	2.5	49	89	0	192	21	36	18	22	1.95
37215439--37215466	3	9.3	3	100	0	56	67	0	0	32	0.91
37218133--37218194	22	2.8	23	83	11	76	43	8	14	33	1.75
37219513--37219757	128	1.9	127	88	2	366	26	21	20	30	1.98
37220070--37220211	44	3.2	42	75	11	133	26	22	15	35	1.94
37220116--37220315	100	2.0	99	90	0	310	24	24	19	32	1.98
37220215--37220343	44	2.9	45	75	2	152	24	24	23	27	2.00
37222441--37222484	18	2.4	18	92	0	70	59	6	20	13	1.57
37224361--37224404	19	2.3	20	84	7	56	40	11	20	27	1.86
37226837--37226896	22	2.7	23	87	10	81	45	6	15	33	1.72
37229056--37229086	16	1.9	16	93	0	53	48	0	0	51	1.00
37229456--37229485	16	1.9	15	93	6	51	56	0	3	40	1.16
37231388--37231438	18	3.0	17	80	8	50	35	5	3	54	1.43
37231401--37231438	18	2.1	18	90	0	58	34	7	2	55	1.43
37235062--37235117	25	2.2	25	83	0	67	33	21	17	26	1.96
37241181--37241260	42	1.9	42	84	0	106	25	25	32	17	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37241616--37241647	15	2.0	17	88	11	50	37	12	15	34	1.85
37250003--37250077	37	2.0	37	87	5	107	24	28	8	40	1.83
37253877--37254098	18	12.4	18	70	15	122	31	18	15	33	1.93
37253925--37254046	20	6.3	20	76	7	117	33	17	15	33	1.91
37253880--37253969	47	2.0	45	84	8	119	30	18	17	33	1.95
37253925--37254027	38	2.7	38	83	3	136	33	17	16	33	1.92
37253925--37254040	38	3.1	37	80	5	133	33	18	15	32	1.92
37254010--37254062	20	2.7	20	87	0	79	37	20	7	33	1.81
37258703--37258741	20	2.0	20	89	0	60	38	10	15	35	1.81
37258902--37258940	15	2.5	15	91	4	60	64	10	10	15	1.50
37261035--37261107	9	8.1	9	78	6	85	26	9	21	42	1.83
37261030--37261107	27	2.9	27	81	14	97	25	10	21	42	1.84
37261951--37261976	7	3.7	7	100	0	52	11	0	0	88	0.52
37275453--37275502	24	2.1	24	88	0	73	52	22	2	24	1.58
37277204--37277433	101	2.3	101	88	2	327	31	13	25	29	1.94
37277442--37277492	24	2.1	24	88	0	75	50	1	23	23	1.59
37282005--37282035	2	15.5	2	100	0	62	0	0	48	51	1.00
37282148--37282384	101	2.3	101	88	0	339	30	13	26	29	1.94
37282380--37282430	24	2.1	24	88	0	75	49	3	25	21	1.67
37298344--37298815	46	9.8	51	73	10	350	29	16	23	30	1.96
37298375--37298797	46	8.9	46	76	8	382	28	17	22	30	1.97
37298342--37298790	96	4.7	97	82	4	563	28	17	22	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37298342--37298732	142	2.7	140	77	9	457	28	16	23	31	1.96
37301407--37301507	29	3.5	28	73	10	96	33	10	2	52	1.52
37301407--37301508	28	3.5	29	71	14	93	34	10	2	51	1.52
37301428--37301519	29	3.2	29	68	20	75	30	13	5	51	1.63
37303272--37303301	12	2.5	12	88	0	51	90	0	10	0	0.47
37303271--37303309	19	2.1	19	90	0	60	84	0	15	0	0.62
37303271--37303309	13	3.1	13	85	7	53	84	0	15	0	0.62
37315417--37315471	27	2.0	27	92	0	92	40	12	16	30	1.86
37322524--37322550	14	1.9	14	100	0	54	22	0	0	77	0.76
37322930--37323171	78	3.1	78	86	6	289	34	15	12	37	1.85
37323169--37323385	84	2.8	74	79	13	263	34	9	11	43	1.74
37323219--37323475	84	3.1	84	84	5	317	31	10	12	45	1.76
37325860--37326044	79	2.3	82	84	7	238	25	27	22	24	2.00
37325841--37326044	40	5.1	40	82	8	238	25	27	22	25	2.00
37340217--37340262	14	3.5	14	77	14	53	34	2	0	63	1.07
37353115--37353234	57	2.1	56	87	6	170	47	15	15	20	1.82
37353187--37353238	23	2.3	23	80	3	70	44	19	17	19	1.87
37354185--37354214	15	2.0	15	93	0	51	70	13	6	10	1.34
37355203--37355264	21	2.7	23	72	25	58	29	19	8	43	1.79
37358388--37358428	14	2.9	14	82	13	57	12	4	7	75	1.16
37361005--37361040	15	2.5	14	86	8	54	44	8	0	47	1.33
37361595--37361619	13	1.9	13	100	0	50	0	12	0	88	0.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37362977--37363060	12	7.4	11	76	16	66	71	0	3	25	1.02
37362985--37363057	4	18.5	4	78	16	73	72	0	2	24	0.98
37366758--37366792	15	2.4	14	86	9	52	42	8	0	48	1.33
37373426--37373477	14	3.7	13	74	18	50	75	0	21	3	0.97
37375469--37375666	97	2.1	97	98	0	380	35	14	9	40	1.77
37376823--37376886	31	2.2	28	84	13	78	25	12	3	59	1.48
37377553--37377600	9	5.4	9	78	14	55	27	8	18	45	1.78
37382314--37382417	49	2.1	49	89	0	154	31	8	11	48	1.70
37383793--37384361	120	4.8	120	90	3	850	42	1	5	50	1.33
37384050--37384427	66	6.1	64	73	16	291	42	1	5	50	1.34
37384619--37384715	45	2.2	45	88	5	144	36	27	4	31	1.76
37384701--37384731	16	1.9	16	100	0	62	25	32	3	38	1.72
37386853--37386916	27	2.4	27	81	0	74	34	26	21	17	1.95
37388449--37388479	16	2.0	15	93	6	53	6	3	6	83	0.88
37392605--37392638	16	2.1	16	100	0	68	50	11	20	17	1.77
37394457--37394486	15	2.0	15	100	0	60	20	20	13	46	1.83
37399465--37399495	3	10.3	3	100	0	62	67	0	0	32	0.91
37400685--37400755	33	2.2	32	82	7	81	14	16	8	60	1.57
37405379--37405417	14	2.7	15	80	8	53	58	0	2	38	1.12
37412121--37412172	16	3.2	16	86	0	77	40	3	30	25	1.73
37412154--37412247	44	2.1	46	90	4	147	27	5	31	35	1.79
37412399--37412514	18	7.0	17	66	14	55	55	3	0	40	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37419932--37420191	142	1.9	133	84	7	340	38	13	5	42	1.68
37427507--37427539	17	1.9	18	88	11	52	54	0	0	45	0.99
37430299--37430362	29	2.2	29	97	0	119	42	0	21	35	1.54
37430397--37430435	18	2.2	18	95	0	69	28	2	10	58	1.44
37435731--37435813	41	2.0	41	92	0	139	33	4	14	46	1.66
37437774--37437831	19	3.1	19	75	7	57	15	24	27	32	1.95
37437873--37437959	44	2.0	44	83	0	111	20	25	14	39	1.91
37439657--37439690	17	1.9	18	88	5	52	5	26	8	58	1.51
37442322--37442453	32	4.3	31	74	21	111	53	3	3	40	1.35
37442334--37442462	64	2.0	65	83	4	163	53	3	3	39	1.35
37444378--37444416	20	2.0	20	84	0	51	43	0	0	56	0.99
37444477--37444505	15	1.9	15	100	0	58	41	6	3	48	1.47
37444582--37444614	16	2.0	17	88	5	50	45	3	9	42	1.51
37444152--37444850	245	2.8	243	80	7	802	37	9	7	45	1.65
37444828--37444892	30	2.3	27	84	7	85	43	0	4	52	1.22
37459528--37459561	17	2.0	17	100	0	68	35	0	23	41	1.55
37461674--37461716	17	2.5	17	96	0	77	25	32	20	20	1.97
37469135--37469199	32	2.0	32	96	0	121	36	18	9	35	1.83
37490091--37490118	9	3.1	9	100	0	56	21	21	10	46	1.81
37491074--37491574	250	2.0	250	96	0	912	37	13	27	21	1.91
37492782--37492814	14	2.3	15	89	5	50	24	15	33	27	1.95
37492902--37492945	6	7.5	6	94	5	81	81	0	18	0	0.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37493543--37493958	143	2.9	143	89	0	634	28	19	22	28	1.98
37498609--37498643	18	2.0	17	88	5	52	37	2	0	60	1.12
37499814--37499843	12	2.5	12	94	0	51	33	3	16	46	1.64
37504667--37504840	87	2.0	89	90	2	280	35	12	21	30	1.90
37505318--37505386	16	4.2	16	92	3	120	24	1	37	36	1.65
37505318--37505386	33	2.1	32	94	2	120	24	1	37	36	1.65
37505367--37505457	45	2.0	45	85	2	121	27	6	28	37	1.82
37505622--37505656	18	2.0	17	88	5	52	54	0	0	45	0.99
37505605--37505987	120	3.2	120	98	0	730	48	5	2	43	1.37
37505742--37505776	18	2.0	17	88	5	52	54	0	0	45	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144