genome.fa.s11.2.7.7.80.10.50.1000.141.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  141  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43719340--43719373	17	1.9	17	88	5	50	14	44	29	11	1.81
43727810--43727916	43	2.5	43	84	0	133	29	26	18	25	1.98
43729004--43729034	16	1.9	16	93	0	53	48	3	12	35	1.58
43731729--43732936	179	6.8	179	94	1	2007	28	24	18	29	1.98
43732023--43732117	43	2.2	45	82	3	113	29	23	13	33	1.93
43732202--43732296	43	2.2	45	86	3	131	28	25	14	31	1.95
43732381--43732475	43	2.2	45	86	3	131	28	25	14	31	1.95
43732560--43732654	43	2.2	45	86	3	131	28	25	14	31	1.95
43732739--43732833	43	2.2	45	86	3	131	28	25	14	31	1.95
43734060--43734216	51	2.9	54	85	6	205	15	21	17	45	1.84
43739135--43739289	39	4.0	39	95	0	274	25	29	23	21	1.99
43743285--43743315	11	2.9	11	95	4	55	19	0	0	80	0.71
43748472--43748511	21	2.0	21	85	5	55	20	25	42	12	1.86
43752196--43752239	22	2.0	22	100	0	88	27	18	13	40	1.88
43755539--43755585	15	3.1	15	81	6	51	72	4	0	23	1.02
43755531--43755675	11	12.7	11	68	23	54	62	3	2	31	1.26
43788384--43788464	31	2.5	31	84	4	99	60	19	6	13	1.54
43794122--43794297	9	20.0	9	67	11	71	35	2	18	43	1.62
43794106--43794341	52	4.7	52	73	15	199	35	2	16	44	1.63
43794139--43794345	43	4.6	43	79	11	216	35	2	16	44	1.63
43794172--43794345	95	1.8	95	86	0	249	35	2	16	45	1.63
43794276--43794364	43	2.1	43	80	4	99	33	4	14	47	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43794351--43794424	19	3.8	19	77	8	78	51	2	0	45	1.15
43794356--43794439	39	2.2	38	93	6	143	51	4	0	44	1.22
43795980--43796045	19	3.2	21	87	6	64	36	19	9	34	1.84
43795997--43796075	19	4.2	19	90	9	126	35	16	10	37	1.82
43796019--43796075	17	3.5	15	88	11	53	35	15	10	38	1.82
43795997--43796075	36	2.1	39	90	9	128	35	16	10	37	1.82
43798376--43798620	74	3.3	74	80	5	255	36	20	15	28	1.92
43798544--43798838	115	2.6	111	78	7	270	32	18	17	30	1.95
43798653--43798864	115	1.8	116	86	1	309	34	17	18	28	1.95
43798965--43799026	7	8.9	7	77	7	54	38	41	0	19	1.51
43799236--43799389	7	21.6	7	67	13	64	48	30	0	21	1.51
43799222--43799290	14	5.0	14	70	20	56	46	31	0	21	1.52
43799237--43799389	14	10.7	14	73	14	98	47	30	0	21	1.51
43799318--43799384	28	2.4	28	90	5	109	47	32	0	19	1.50
43799679--43800028	194	1.8	194	86	6	521	27	22	21	28	1.99
43800988--43801084	33	2.9	34	72	17	85	50	1	4	44	1.28
43804749--43804794	22	2.1	22	84	4	58	45	0	6	47	1.28
43805408--43805465	4	13.8	4	83	7	71	46	3	1	48	1.29
43805881--43805930	14	3.3	15	78	13	50	30	6	0	64	1.18
43806321--43806365	23	2.0	23	90	0	72	0	20	2	77	0.87
43806327--43806365	7	5.3	7	82	11	51	0	20	0	79	0.73
43806924--43807120	63	3.1	62	78	11	186	25	23	26	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43832049--43832083	9	3.9	9	88	0	52	51	2	0	45	1.16
43840423--43840966	102	5.3	102	96	0	926	20	18	26	34	1.96
43840869--43840989	33	3.4	33	69	24	91	21	18	27	33	1.96
43852065--43852283	45	4.9	45	94	0	366	26	20	15	38	1.91
43854921--43854955	15	2.3	15	90	9	54	25	0	22	51	1.48
43855209--43855718	93	5.5	93	93	0	849	32	11	15	41	1.83
43855231--43855447	23	9.2	24	60	18	62	33	11	15	39	1.84
43855209--43855718	47	10.9	47	91	1	837	32	11	15	41	1.83
43855209--43855705	140	3.5	140	93	1	843	32	11	15	41	1.82
43857885--43858105	27	8.2	27	79	7	175	23	19	17	40	1.91
43857885--43858105	53	4.1	54	78	7	186	23	19	17	40	1.91
43857874--43858105	80	2.9	80	83	7	265	23	18	18	39	1.92
43864422--43864748	161	2.0	161	91	2	523	27	10	19	42	1.84
43870187--43870366	48	3.8	48	80	1	173	31	17	16	35	1.92
43879041--43879690	47	13.5	47	88	6	937	31	8	30	29	1.87
43879248--43879275	13	2.2	13	100	0	56	35	14	25	25	1.93
43879201--43879322	60	2.0	60	98	0	235	31	9	29	28	1.89
43881796--43881830	17	2.2	16	90	10	54	60	22	11	5	1.52
43882145--43882179	17	2.1	17	100	0	70	28	11	14	45	1.79
43882331--43882381	26	2.0	26	92	0	84	29	19	11	39	1.87
43882883--43882934	24	2.2	23	86	6	77	17	7	25	50	1.72
43883932--43884086	43	3.6	43	86	6	208	29	25	14	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43883945--43884086	42	3.3	42	88	4	196	30	25	14	29	1.94
43887828--43887964	64	2.2	64	95	1	249	35	7	8	48	1.60
43889562--43889602	20	2.0	22	90	9	68	7	24	2	65	1.30
43894400--43894467	33	2.1	33	97	0	127	17	17	22	42	1.89
43894298--43894602	27	11.1	27	82	5	360	17	18	22	41	1.90
43904195--43904324	10	12.9	10	71	22	76	22	3	1	73	1.06
43904252--43904323	3	23.7	3	78	16	69	25	0	1	73	0.91
43904202--43904323	13	9.2	13	74	16	90	22	3	1	72	1.09
43904385--43904460	3	25.0	3	75	15	59	26	3	3	65	1.27
43910688--43910830	73	2.0	73	97	0	268	35	15	13	34	1.87
43916235--43916264	4	7.2	4	96	3	51	23	3	0	73	0.98
43916728--43916805	39	2.0	39	94	0	138	29	12	20	37	1.90
43918938--43918998	32	1.9	32	96	3	115	47	13	6	32	1.68
43924725--43924786	32	2.0	32	93	3	108	46	11	6	35	1.65
43934702--43935775	217	5.0	217	91	0	1668	29	19	22	27	1.98
43934837--43935163	173	1.9	173	81	9	400	28	20	24	27	1.99
43935101--43935348	128	1.9	129	83	7	317	28	20	24	27	1.99
43934702--43935770	433	2.5	434	91	1	1705	29	20	22	27	1.98
43934795--43935740	44	21.8	44	70	14	370	29	19	23	27	1.98
43935662--43935775	44	2.6	44	82	8	108	29	18	21	29	1.97
43935534--43935770	128	1.9	128	81	8	295	30	19	19	29	1.97
43937280--43937318	20	1.9	21	84	5	53	28	2	7	61	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43938124--43938842	44	16.5	44	74	14	530	29	20	23	27	1.99
43938098--43939073	88	11.2	88	77	10	834	30	19	23	27	1.98
43938098--43939017	217	4.2	216	83	8	1037	29	20	23	27	1.98
43938098--43939072	44	22.4	44	70	14	499	30	19	22	27	1.98
43940296--43940335	4	9.5	4	86	8	53	25	5	0	70	1.08
43947307--43947350	11	4.0	11	93	0	79	27	6	9	56	1.55
43947924--43948013	45	2.0	45	86	0	126	34	27	21	16	1.95
43956102--43956164	31	2.0	31	100	0	126	46	22	9	22	1.80
43958822--43958940	24	5.0	24	86	0	130	23	17	25	33	1.96
43958958--43959004	24	2.0	24	87	8	69	23	21	25	29	1.99
43958894--43959045	64	2.4	63	88	2	214	25	19	25	28	1.99
43960434--43960552	48	2.5	48	88	2	168	26	21	24	27	1.99
43960434--43960550	24	4.9	24	81	3	128	26	21	23	28	1.99
43960540--43960877	180	1.9	180	91	0	559	27	14	26	31	1.95
43963579--43963633	26	2.1	27	83	10	69	56	1	0	41	1.10
43963606--43963642	14	2.6	15	79	12	51	62	0	0	37	0.96
43968073--43968158	40	2.2	39	81	10	104	36	23	20	19	1.95
43968376--43968755	99	3.7	99	91	5	553	33	21	20	25	1.97
43968552--43969417	114	7.6	114	92	0	1266	34	19	20	24	1.96
43969974--43970061	7	12.6	7	78	4	70	14	1	38	45	1.53
43969974--43970055	42	2.0	42	95	0	146	14	0	39	46	1.45
43970596--43970823	72	3.1	72	70	12	230	23	14	23	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43970629--43970851	72	3.1	72	68	12	211	24	14	21	39	1.91
43970603--43970899	146	2.0	146	95	0	531	24	14	20	40	1.90
43971090--43971124	18	1.9	18	88	0	52	31	37	2	28	1.72
43972798--43973051	20	12.7	20	69	17	152	47	8	5	38	1.56
43972746--43972948	86	2.4	86	100	0	406	47	10	3	37	1.55
43972905--43973084	57	3.2	57	91	1	290	45	8	5	40	1.59
43972996--43973189	87	2.2	84	80	12	214	41	11	4	42	1.61
43978670--43978720	21	2.4	21	86	0	66	39	17	41	1	1.61
43979334--43979452	41	2.9	41	84	1	157	27	23	21	26	1.99
43980931--43981104	86	2.0	88	95	2	316	51	10	8	28	1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144