genome.fa.s11.2.7.7.80.10.50.1000.60.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  60  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18353123--18353230	40	2.7	40	88	7	164	33	2	0	63	1.08
18353165--18353262	30	3.3	29	78	8	99	39	1	0	59	1.04
18353233--18353296	10	6.1	10	77	13	58	43	1	0	54	1.09
18353213--18353294	41	2.0	42	88	9	123	42	1	0	56	1.07
18353124--18353296	72	2.4	71	83	4	215	36	2	0	60	1.09
18353173--18353296	11	11.9	11	69	17	77	39	1	0	58	1.08
18365513--18365800	42	6.7	42	85	6	366	23	17	23	35	1.95
18365515--18365800	130	2.2	125	87	9	400	23	17	23	35	1.95
18372088--18372116	15	1.9	15	100	0	58	27	31	13	27	1.94
18375801--18375831	16	1.9	16	93	0	53	16	0	3	80	0.83
18376754--18377029	136	2.0	136	98	0	534	31	14	23	30	1.94
18389429--18390422	497	2.0	497	99	0	1970	23	16	25	34	1.96
18393060--18393105	17	2.7	17	82	0	56	39	0	0	60	0.97
18393098--18393137	21	1.9	21	89	0	62	37	2	0	60	1.11
18396129--18396153	13	1.9	13	100	0	50	44	0	0	56	0.99
18396143--18396180	17	2.3	16	86	8	58	52	2	2	42	1.29
18397497--18397523	6	4.5	6	100	0	54	29	18	0	51	1.46
18400401--18400643	6	40.5	6	100	0	486	50	16	0	33	1.46
18401420--18401444	6	4.2	6	100	0	50	32	16	0	52	1.44
18405787--18405823	3	12.3	3	94	0	65	32	35	0	32	1.58
18407199--18407246	15	3.2	15	82	5	53	50	0	0	50	1.00
18417784--18417858	37	2.0	37	100	0	150	29	8	26	36	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18421665--18421759	30	3.2	29	86	7	129	26	25	4	44	1.72
18422522--18422553	16	2.0	16	100	0	64	37	31	18	12	1.88
18434756--18435207	76	6.0	76	86	1	602	28	18	19	33	1.95
18435796--18435887	30	3.1	30	84	4	125	25	23	5	45	1.74
18436763--18436862	23	4.1	25	85	6	111	32	37	21	10	1.86
18436748--18436849	23	4.3	23	82	3	105	36	35	18	9	1.84
18436874--18436924	17	3.1	17	82	5	59	35	49	13	1	1.54
18440234--18440319	19	4.9	17	73	26	74	43	0	1	55	1.07
18443079--18443107	6	4.8	6	100	0	58	13	0	0	86	0.58
18444886--18444921	12	3.0	12	83	0	54	11	5	5	77	1.10
18445583--18445622	12	3.2	12	89	3	53	32	5	2	60	1.32
18447004--18447044	20	2.0	20	100	0	82	43	4	0	51	1.23
18449944--18450001	20	2.8	19	80	17	62	43	0	0	56	0.99
18451001--18451407	110	3.7	110	93	1	658	33	19	15	30	1.93
18457792--18457822	16	2.0	16	93	6	55	45	16	25	12	1.83
18462913--18462954	21	1.9	22	85	9	59	61	4	0	33	1.17
18462899--18462956	21	2.7	21	71	26	50	63	3	0	32	1.11
18465244--18465301	28	2.1	28	86	0	80	36	31	8	24	1.85
18465244--18465314	21	3.4	21	78	7	65	35	30	9	23	1.88
18465263--18465322	21	2.9	20	82	5	66	36	31	8	23	1.84
18468065--18468126	31	1.9	32	83	6	81	43	0	11	45	1.40
18473398--18473422	11	2.3	11	100	0	50	36	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18474079--18474162	10	8.8	10	74	8	77	33	1	2	63	1.15
18474072--18474163	29	3.2	28	80	4	103	30	2	2	65	1.16
18474062--18474162	38	2.6	39	79	4	107	29	2	1	65	1.18
18474073--18474162	9	9.6	9	73	13	74	31	2	2	64	1.18
18474228--18474252	13	1.9	13	100	0	50	40	16	8	36	1.77
18474258--18474450	93	2.1	93	78	9	205	34	9	17	37	1.83
18474278--18474450	93	1.9	92	80	9	208	36	10	17	35	1.85
18478023--18478088	33	2.0	33	96	0	123	15	25	18	40	1.89
18482421--18482475	10	5.6	10	74	10	51	61	1	3	32	1.24
18482414--18482455	19	2.2	19	91	0	66	64	2	2	30	1.19
18482451--18482516	20	3.2	22	75	12	68	69	6	3	21	1.24
18485871--18485935	32	2.1	32	97	2	123	47	12	9	30	1.72
18498519--18498631	33	3.4	33	84	6	147	29	0	27	43	1.55
18498519--18498633	34	3.4	34	84	7	155	28	0	27	43	1.55
18498662--18498784	34	3.7	34	79	9	137	39	0	15	45	1.46
18498838--18499352	124	4.1	124	86	3	622	38	15	16	29	1.89
18499371--18499485	57	2.0	57	91	0	185	40	13	16	29	1.86
18501352--18501394	18	2.4	18	88	0	59	41	9	25	23	1.84
18504811--18504835	3	8.3	3	100	0	50	68	0	0	32	0.90
18506261--18506295	17	1.9	19	88	11	56	65	11	2	20	1.37
18506651--18506702	26	1.9	28	84	7	72	19	13	13	53	1.72
18517657--18517690	16	2.0	18	88	11	54	64	0	0	35	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18519127--18519186	32	1.9	31	83	10	77	48	0	3	48	1.18
18522859--18523032	96	1.9	89	86	10	242	32	2	5	60	1.31
18523014--18523046	10	3.4	10	83	8	50	33	0	3	63	1.10
18523093--18523127	10	3.6	10	84	7	54	34	0	2	62	1.10
18522945--18523189	81	3.1	80	90	6	376	31	2	3	62	1.26
18523154--18523193	21	1.9	21	85	10	55	32	0	0	67	0.91
18524896--18525294	196	2.0	196	90	0	620	32	18	9	39	1.84
18532843--18532875	15	2.1	16	88	5	50	63	21	0	15	1.30
18533906--18534005	51	2.0	51	95	0	182	21	31	6	42	1.77
18538165--18538212	25	1.9	25	95	0	87	31	12	14	41	1.83
18542964--18543020	28	2.0	28	82	0	69	54	3	3	38	1.35
18549683--18549707	6	4.2	6	100	0	50	68	0	32	0	0.90
18550704--18551113	109	3.8	109	94	0	667	34	18	15	31	1.92
18551145--18551184	21	1.9	21	90	10	64	57	2	10	30	1.45
18551334--18551377	18	2.3	19	80	7	54	72	2	2	22	1.07
18552766--18552800	10	3.3	10	85	14	52	5	0	34	60	1.21
18553611--18553660	3	16.7	3	91	8	84	34	0	2	64	1.05
18561731--18561755	4	6.2	4	100	0	50	52	24	0	24	1.48
18568259--18568316	18	3.0	20	80	17	77	37	1	0	60	1.07
18568265--18568318	9	5.6	10	76	10	51	33	1	0	64	1.04
18579200--18579235	18	1.9	18	88	5	54	52	8	16	22	1.70
18588759--18588874	54	2.1	54	85	4	153	35	9	5	50	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18591444--18591531	28	3.1	28	62	28	69	46	17	2	34	1.60
18591435--18591569	56	2.4	56	98	0	261	46	14	4	34	1.64
18594853--18595262	205	2.0	205	98	0	793	27	10	13	49	1.74
18602059--18602098	20	2.0	20	85	0	53	30	10	10	50	1.69
18608222--18608299	41	1.9	41	100	0	156	50	17	12	19	1.78
18609621--18609862	131	1.8	132	89	0	378	29	15	12	41	1.85
18613638--18613668	4	8.0	4	92	7	55	51	0	0	48	1.00
18620414--18620452	19	2.1	19	85	0	51	61	7	7	23	1.49
18620527--18620552	10	2.6	10	100	0	52	11	7	7	73	1.26
18621539--18621606	6	11.7	6	87	10	70	76	10	11	1	1.09
18621545--18621607	17	3.6	17	78	19	60	76	9	12	1	1.09
18621539--18621601	23	2.6	24	77	5	65	76	11	11	1	1.10
18621636--18621678	12	3.5	12	81	6	50	60	2	9	27	1.40
18621928--18622094	63	2.6	64	83	4	205	11	31	23	34	1.90
18634106--18634161	27	2.1	27	93	0	94	30	26	16	26	1.96
18636089--18636126	12	3.0	13	88	7	60	60	28	2	7	1.38
18639521--18640186	333	2.0	333	100	0	1332	44	4	19	31	1.71
18641743--18641807	25	2.7	23	80	13	69	38	3	6	52	1.42
18642151--18642197	19	2.5	20	79	10	53	48	2	2	46	1.25
18642167--18642203	19	1.9	19	100	0	74	43	0	2	54	1.14
18642383--18642439	29	1.9	29	85	3	78	52	10	5	31	1.58
18650884--18650916	17	2.0	17	88	5	50	39	0	24	36	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18653265--18653367	38	2.7	37	79	5	100	26	21	22	30	1.99
18657408--18657432	7	3.6	7	100	0	50	24	0	0	76	0.80
18659721--18659791	24	3.0	24	83	2	90	21	29	5	43	1.75
18661093--18661271	94	1.9	94	80	4	209	32	20	16	30	1.94
18661095--18661568	232	2.0	232	82	3	578	32	19	17	31	1.95
18661454--18661612	44	3.6	42	85	8	183	27	20	19	32	1.97
18661289--18661524	94	2.5	94	83	2	294	31	18	18	31	1.95
18669636--18669668	10	3.2	11	91	8	52	66	0	15	18	1.25
18673636--18673667	16	2.0	16	100	0	64	37	6	18	37	1.76
18674392--18674431	4	10.0	4	100	0	80	75	0	0	25	0.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144