genome.fa.s11.2.7.7.80.10.50.1000.17.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  17  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4750748--4750796	22	2.1	22	85	7	62	61	2	10	26	1.39
4754389--4754420	8	4.0	8	100	0	64	37	0	0	62	0.95
4756510--4756577	30	2.3	31	82	10	79	33	8	10	47	1.69
4757980--4758041	27	2.3	28	81	13	76	45	0	1	53	1.10
4758171--4758200	5	5.8	5	92	7	51	80	0	0	20	0.72
4758952--4758990	18	2.2	18	86	4	53	38	0	0	61	0.96
4761010--4761133	60	2.1	58	82	4	142	42	12	4	39	1.65
4765459--4765496	13	2.9	13	92	0	67	28	7	23	39	1.83
4765691--4765736	24	1.9	24	86	0	65	52	2	0	45	1.13
4766376--4766418	10	4.6	9	80	11	50	39	0	0	60	0.97
4766373--4766412	21	2.0	20	85	5	53	42	0	0	57	0.98
4766373--4766418	19	2.4	18	79	10	56	39	0	0	60	0.97
4768157--4768219	27	2.3	27	81	10	67	30	4	1	63	1.24
4774516--4774604	44	2.0	44	100	0	178	60	6	19	13	1.55
4775748--4775803	23	2.4	25	82	11	66	44	0	12	42	1.42
4790741--4790811	35	2.0	35	88	0	106	36	8	22	32	1.84
4793110--4793449	117	2.9	116	82	3	387	33	14	29	22	1.94
4798709--4800362	549	3.0	548	89	0	2432	38	14	26	20	1.91
4806294--4806340	24	2.0	24	84	12	62	63	4	0	31	1.13
4806912--4806944	16	2.1	16	100	0	66	42	12	18	27	1.85
4814800--4815074	147	1.9	147	86	1	399	38	8	32	20	1.82
4820553--4820604	27	2.0	26	92	3	86	32	1	0	65	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4820542--4820592	19	3.1	16	76	17	52	29	1	0	68	1.00
4828506--4828705	105	1.9	105	81	4	242	36	16	21	26	1.94
4833778--4833804	4	6.8	4	100	0	54	25	0	22	51	1.48
4844087--4844130	23	1.9	23	100	0	88	29	9	20	40	1.83
4853644--4853669	13	2.0	13	100	0	52	46	7	0	46	1.31
4854038--4854067	14	2.1	15	93	6	53	53	0	0	46	1.00
4860703--4860765	31	2.0	32	81	12	76	44	11	12	31	1.78
4873156--4873248	18	5.2	18	93	0	159	26	24	17	31	1.97
4873156--4873248	36	2.6	36	98	0	177	26	24	17	31	1.97
4896338--4896368	16	1.9	16	93	0	53	38	22	3	35	1.71
4899718--4899760	21	2.0	22	86	13	63	30	2	2	65	1.18
4899922--4899970	15	3.3	15	79	0	53	55	0	18	26	1.43
4903697--4903785	45	2.0	45	89	6	137	43	7	12	35	1.71
4905254--4905281	8	3.5	8	100	0	56	50	0	0	50	1.00
4905264--4905306	23	1.9	22	85	4	59	39	0	4	55	1.20
4907041--4907074	16	2.1	16	88	5	50	61	0	0	38	0.96
4910395--4910433	20	2.0	20	94	0	69	61	0	5	33	1.18
4910460--4910486	13	2.1	13	100	0	54	40	0	0	59	0.98
4916060--4916102	17	2.7	16	86	10	61	46	2	0	51	1.13
4918017--4918042	5	5.2	5	100	0	52	19	19	19	42	1.90
4918274--4918334	25	2.3	27	81	16	74	44	3	1	50	1.28
4918986--4919023	5	7.6	5	100	0	76	60	0	0	39	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4929269--4929341	37	1.9	38	86	2	103	32	19	1	46	1.58
4929329--4929372	23	1.9	22	82	17	54	38	22	0	38	1.55
4929478--4929522	23	2.0	23	100	0	90	33	26	22	17	1.96
4929749--4929787	18	2.2	17	86	13	53	46	20	0	33	1.51
4929970--4930028	30	2.0	30	86	0	82	28	25	8	37	1.85
4931040--4931073	16	2.1	16	100	0	68	44	26	0	29	1.55
4932363--4932501	45	3.1	45	77	6	140	37	20	12	28	1.90
4932972--4933157	50	3.8	50	89	2	261	17	33	22	26	1.96
4932972--4933155	97	1.9	97	89	3	287	17	33	22	26	1.96
4932929--4933159	97	2.4	97	82	5	252	20	32	20	26	1.97
4935630--4935756	49	2.6	49	85	4	170	31	25	15	26	1.96
4936983--4937055	38	1.9	37	86	8	103	31	21	1	45	1.61
4937043--4937086	23	1.9	22	82	17	54	38	22	0	38	1.55
4937185--4937283	23	4.3	23	93	0	171	32	26	18	23	1.97
4945113--4945162	24	2.0	24	84	7	64	34	10	10	46	1.71
4947354--4947411	24	2.5	23	84	15	84	15	5	3	75	1.11
4947506--4947570	20	2.9	22	80	17	64	40	3	0	56	1.15
4947549--4947609	16	3.7	15	72	14	50	47	4	1	45	1.34
4949785--4949902	42	2.8	42	85	6	150	30	27	18	23	1.98
4949787--4949943	43	3.7	42	80	7	156	29	28	19	22	1.98
4953459--4953497	17	2.6	14	84	15	51	56	2	2	38	1.27
4953481--4953517	19	1.9	19	94	0	65	62	0	0	37	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4953579--4953639	22	2.7	22	76	16	54	60	0	0	39	0.97
4953589--4953637	25	2.0	25	84	4	64	63	0	0	36	0.95
4954035--4954194	79	2.0	79	91	2	259	32	10	12	45	1.75
4969334--4969370	18	2.0	19	89	5	58	45	8	0	45	1.32
4969445--4969486	21	2.0	21	85	4	57	54	4	4	35	1.42
4978988--4979028	21	2.0	21	90	0	64	19	29	21	29	1.98
4983820--4983860	21	2.0	21	90	0	64	19	29	21	29	1.98
4984020--4984125	53	2.0	53	98	0	203	29	22	18	29	1.98
4995313--4995355	15	2.9	15	86	6	52	53	0	0	46	1.00
4995615--4995664	21	2.4	22	75	21	61	56	4	0	40	1.18
4998340--4998383	24	1.9	22	95	4	70	18	20	13	47	1.82
4998347--4998401	24	2.3	24	84	6	67	21	20	14	43	1.87
5001364--5001436	37	2.0	37	92	5	123	24	24	16	34	1.95
5001399--5001667	46	5.6	46	80	10	304	27	22	15	34	1.94
5001410--5001667	98	2.6	98	96	0	471	27	21	15	34	1.94
5001463--5001653	52	3.8	52	80	8	250	28	21	15	33	1.95
5005740--5005801	28	2.1	28	91	5	97	41	1	3	53	1.27
5006442--5006477	18	2.1	18	89	5	56	41	0	25	33	1.55
5006923--5006986	21	3.0	22	70	9	69	18	17	25	39	1.92
5009468--5009716	50	4.8	50	85	4	284	20	29	24	26	1.99
5009467--5009716	100	2.4	104	88	6	357	20	29	24	26	1.99
5009811--5009842	13	2.5	13	94	0	55	56	12	0	31	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5010054--5010111	30	1.9	30	89	0	89	31	24	3	41	1.71
5011342--5011377	17	2.1	17	100	0	72	44	19	11	25	1.83
5012779--5012828	25	2.0	25	88	0	73	24	18	16	42	1.89
5015682--5015741	30	2.0	30	90	0	93	26	20	13	40	1.89
5022487--5022574	37	2.4	37	98	0	167	27	42	0	30	1.56
5039082--5039127	19	2.4	20	79	17	53	65	2	30	2	1.16
5039534--5039578	23	2.0	22	82	4	54	51	33	2	13	1.53
5040253--5040278	10	2.6	10	100	0	52	0	23	0	76	0.78
5044115--5044149	17	2.1	17	88	0	52	54	2	0	42	1.15
5044141--5044220	20	4.0	20	74	21	60	35	0	5	60	1.19
5044147--5044224	39	2.0	38	82	7	95	33	0	6	60	1.22
5044462--5044512	24	2.1	24	96	0	93	41	3	21	33	1.72
5044840--5044890	19	2.6	21	85	11	65	33	1	3	60	1.26
5045322--5045365	20	2.2	21	84	8	56	36	2	2	59	1.23
5048195--5048267	35	2.1	35	100	0	146	49	5	8	36	1.56
5049457--5049528	9	7.6	9	76	11	72	40	27	8	23	1.83
5049456--5049528	20	3.8	19	75	13	78	41	27	8	23	1.82
5049456--5049528	29	2.5	29	90	0	128	41	27	8	23	1.82
5049529--5049641	37	3.1	37	93	1	192	46	15	5	32	1.68
5049552--5049615	20	3.3	20	68	12	62	45	15	4	34	1.67
5049572--5049632	17	3.4	17	68	12	50	50	13	3	32	1.57
5057548--5057593	22	2.1	22	100	0	92	30	17	13	39	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5060652--5060703	27	1.9	27	84	0	68	61	13	0	25	1.32
5061779--5061803	2	12.5	2	100	0	50	48	52	0	0	1.00
5061803--5061840	2	19.0	2	100	0	76	0	50	0	50	1.00
5063342--5063392	17	3.0	17	82	0	57	43	5	17	33	1.73
5063809--5064049	110	2.2	110	87	1	358	21	24	31	21	1.98
5069655--5069786	61	2.1	63	88	2	196	31	9	8	51	1.63
5072968--5073102	61	2.2	61	79	13	145	49	4	5	40	1.45
5085546--5085748	46	4.3	48	88	7	265	35	14	21	28	1.92
5085480--5085748	98	2.7	98	93	0	457	34	14	22	28	1.93
5085712--5085857	37	4.0	37	93	1	242	36	16	21	24	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144