genome.fa.s11.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  13  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3127771--3127894	58	2.1	58	88	2	178	53	3	0	43	1.17
3130840--3130887	24	2.0	25	84	12	64	62	4	16	16	1.48
3130986--3131046	23	2.4	25	84	10	72	44	8	27	19	1.79
3131004--3131052	23	2.1	23	84	0	62	46	6	30	16	1.71
3134020--3134092	34	2.2	34	92	2	121	32	10	12	43	1.77
3151791--3151886	42	2.3	43	87	7	135	22	28	10	38	1.87
3157293--3157333	21	2.0	21	85	9	57	36	9	7	46	1.65
3159196--3159223	14	2.0	14	100	0	56	35	28	21	14	1.92
3160356--3160386	14	2.2	14	94	0	53	38	0	12	48	1.42
3165474--3165514	21	2.0	21	90	0	64	19	29	21	29	1.98
3171514--3171568	26	2.1	26	83	6	67	61	3	1	32	1.24
3175939--3175969	2	15.5	2	100	0	62	51	48	0	0	1.00
3176530--3176610	31	2.6	31	86	3	110	39	6	4	49	1.49
3178287--3178328	21	2.0	21	95	0	75	19	7	23	50	1.72
3182290--3182317	3	9.3	3	100	0	56	32	0	0	67	0.91
3182889--3182971	21	4.0	21	70	6	69	18	16	16	48	1.82
3182910--3182992	42	2.0	42	83	9	107	18	20	16	44	1.87
3186105--3186189	37	2.3	36	91	2	134	30	12	21	35	1.91
3186091--3186333	44	5.6	44	80	14	254	30	15	22	32	1.95
3186091--3186333	87	2.8	90	83	6	304	30	15	22	32	1.95
3186091--3186332	131	1.8	127	83	11	310	30	15	22	32	1.95
3190279--3190358	35	2.3	35	97	0	151	23	11	23	41	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3196045--3196102	20	3.0	19	85	10	73	41	0	5	53	1.23
3196052--3196115	19	3.3	18	82	8	65	35	1	4	57	1.29
3196052--3196102	19	2.6	19	87	9	68	37	0	5	56	1.23
3197899--3197926	13	2.2	13	100	0	56	21	7	14	57	1.61
3201295--3201417	59	2.1	57	80	5	140	44	13	19	22	1.85
3202515--3202539	12	2.1	12	100	0	50	28	0	48	24	1.52
3207625--3207654	13	2.3	13	100	0	60	40	43	0	16	1.48
3207795--3207853	9	6.4	9	81	11	75	22	10	27	40	1.85
3208653--3208700	22	2.1	22	84	3	60	58	8	6	27	1.51
3209286--3209315	2	15.0	2	100	0	60	50	0	0	50	1.00
3221031--3221064	16	2.2	15	89	5	50	64	8	11	14	1.49
3222761--3222837	32	2.4	32	80	0	91	24	24	6	44	1.77
3223306--3223340	18	1.9	18	88	11	54	25	25	11	37	1.90
3227271--3227347	32	2.4	32	80	0	91	24	24	6	44	1.77
3228122--3228195	16	4.7	15	74	17	62	59	1	1	37	1.14
3228127--3228195	30	2.2	30	82	14	79	59	1	1	37	1.15
3228930--3228964	16	2.1	17	89	5	54	40	0	0	60	0.97
3229184--3229228	23	2.0	23	86	0	63	66	2	0	31	1.04
3239205--3239246	15	2.9	15	75	3	50	45	0	0	54	0.99
3248028--3248072	22	2.1	21	83	4	54	60	4	17	17	1.53
3252480--3252564	41	2.1	41	97	0	161	52	5	15	25	1.65
3252588--3252619	16	1.9	17	93	6	57	46	0	9	43	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3253215--3253253	6	6.5	6	93	0	69	0	17	35	46	1.49
3256875--3256923	22	2.3	21	79	10	55	42	14	0	42	1.45
3257360--3257390	14	2.2	14	94	0	53	29	9	0	61	1.28
3264245--3264279	15	2.2	16	90	5	54	42	2	5	48	1.41
3273438--3273497	23	2.6	23	78	10	59	56	13	5	25	1.57
3278504--3278682	89	2.0	89	100	0	358	47	8	7	35	1.64
3278529--3278667	43	3.2	43	67	17	131	50	8	7	33	1.61
3281415--3281556	69	2.1	69	100	0	284	38	18	16	26	1.92
3283410--3283666	126	2.0	128	97	1	491	33	18	10	36	1.86
3289002--3289058	27	2.2	26	83	3	69	28	1	5	64	1.25
3291639--3291685	24	2.0	24	86	0	67	34	4	17	44	1.68
3293156--3293187	16	2.0	16	93	0	55	31	21	12	34	1.91
3293630--3293689	14	4.3	14	78	14	61	58	10	0	31	1.31
3293983--3294043	31	2.0	30	90	3	95	39	0	11	49	1.39
3296005--3296048	22	2.0	22	95	0	79	40	11	13	34	1.81
3305756--3305810	29	1.9	28	85	3	74	41	18	12	27	1.86
3320053--3320080	10	2.8	10	100	0	56	60	0	28	10	1.30
3322226--3322929	48	14.7	48	75	6	464	19	3	50	27	1.63
3322190--3322818	144	4.4	144	81	5	698	19	2	51	26	1.59
3322631--3322707	21	3.4	21	75	25	84	14	2	54	28	1.53
3322895--3323001	27	4.2	27	76	18	120	16	1	50	30	1.56
3322963--3323121	66	2.4	66	81	2	176	21	5	44	28	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3322986--3323106	36	3.6	33	69	15	95	20	6	44	28	1.76
3324264--3324349	27	3.4	27	70	18	76	24	3	50	22	1.65
3324354--3324417	27	2.5	27	82	7	80	18	6	50	25	1.70
3324651--3324736	27	3.2	26	74	12	84	25	1	50	23	1.57
3324261--3325000	144	5.1	144	83	2	712	22	3	50	23	1.63
3324205--3325018	48	16.8	48	81	2	599	23	3	50	23	1.63
3325038--3325173	48	2.8	48	80	0	155	23	6	46	23	1.76
3325609--3325644	5	7.2	5	96	0	63	22	0	0	77	0.76
3344061--3344093	16	2.0	17	88	5	50	51	45	3	0	1.16
3346393--3346425	16	2.1	16	88	5	50	21	24	0	54	1.45
3347536--3347570	17	2.1	17	100	0	70	40	22	17	20	1.92
3350498--3350543	14	3.3	14	77	19	51	34	0	15	50	1.44
3355002--3355079	14	5.1	14	68	24	50	33	7	14	44	1.73
3355025--3355064	20	2.0	20	90	0	62	27	10	12	50	1.72
3355010--3355076	34	1.9	35	93	3	118	31	7	13	47	1.70
3359426--3359867	218	2.0	218	96	0	805	28	17	14	39	1.89
3382280--3382311	6	5.2	6	96	3	55	34	0	0	65	0.93
3382405--3382470	29	2.4	27	72	18	64	42	4	1	51	1.31
3383130--3383361	50	4.6	50	87	1	268	25	24	29	19	1.99
3383271--3383351	26	3.2	26	63	16	69	29	27	23	19	1.98
3383130--3383312	101	1.8	100	85	1	258	25	24	31	19	1.98
3390133--3390331	50	3.8	50	86	4	254	25	22	29	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3390145--3390331	101	1.8	104	87	8	283	25	22	29	22	1.99
3401030--3401063	17	2.0	17	94	0	59	44	50	0	5	1.26
3405669--3405702	17	2.0	17	94	0	59	44	50	0	5	1.26
3407852--3407883	7	4.6	7	100	0	64	31	28	0	40	1.57
3413170--3413195	12	2.2	12	100	0	52	57	0	0	42	0.98
3417657--3417711	21	2.4	23	77	17	62	49	1	1	47	1.23
3417660--3417711	23	2.3	24	75	21	58	51	1	1	44	1.23
3418276--3418305	15	2.0	15	93	0	51	30	13	6	50	1.67
3418345--3418377	12	2.6	13	90	4	50	45	0	6	48	1.27
3418843--3418903	24	2.6	23	87	5	79	32	1	9	55	1.42
3421506--3421546	22	2.0	21	85	9	57	48	2	9	39	1.49
3424902--3424932	6	5.2	6	100	0	62	0	16	0	83	0.64
3430306--3430386	41	2.0	41	85	4	110	32	4	11	51	1.58
3439645--3439754	55	2.0	55	100	0	220	40	7	32	20	1.80
3444305--3444549	121	2.0	122	99	0	483	39	13	13	33	1.84
3449578--3449766	58	3.3	58	88	0	290	31	23	13	31	1.93
3449733--3449798	32	2.1	32	94	0	114	37	18	10	33	1.85
3449678--3449856	90	2.0	90	95	0	322	34	22	11	31	1.90
3449765--3450191	58	7.4	58	80	8	505	32	23	12	31	1.92
3449616--3449914	148	2.0	148	90	0	472	32	23	13	31	1.92
3454740--3454764	13	1.9	13	100	0	50	32	4	24	40	1.73
3469710--3469763	27	2.1	26	93	6	92	46	24	22	7	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3474764--3474799	16	2.2	16	100	0	72	5	25	11	58	1.54
3476777--3476844	21	3.3	21	63	8	59	52	2	11	32	1.53
3476776--3476857	40	2.0	40	100	0	164	56	2	12	29	1.49
3478905--3478952	24	2.0	24	100	0	96	50	4	29	16	1.64
3490090--3490271	41	4.5	40	81	3	186	21	23	7	47	1.76
3494264--3494291	6	4.7	6	100	0	56	32	50	0	17	1.47
3504006--3504093	11	7.9	11	73	2	50	62	9	1	27	1.32
3504008--3504092	14	6.3	13	68	21	59	62	8	1	28	1.31
3508725--3508789	31	2.1	31	85	0	85	44	12	4	38	1.63
3513569--3513618	13	3.8	13	86	0	64	36	4	20	40	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144