genome.fa.s11.2.7.7.80.10.50.1000.16.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  16  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4316241--4318119	388	4.8	388	99	0	3722	36	21	15	26	1.93
4323798--4323827	2	15.0	2	100	0	60	0	50	0	50	1.00
4334224--4334450	124	1.8	124	92	0	382	29	18	21	31	1.96
4336169--4336404	115	2.1	115	100	0	472	44	7	8	39	1.63
4336400--4336846	23	19.1	23	82	8	537	28	0	21	49	1.53
4336400--4336846	67	6.4	69	85	8	482	28	0	21	49	1.53
4336665--4336738	24	2.7	30	88	12	106	29	0	22	47	1.52
4336844--4337821	23	43.2	23	83	5	1167	48	22	0	28	1.55
4336850--4337821	44	21.5	45	84	5	1023	48	22	0	27	1.55
4336844--4337820	272	3.6	267	85	5	1290	48	22	0	28	1.55
4337939--4338181	23	10.7	23	82	7	302	28	0	22	48	1.51
4337946--4338181	67	3.5	66	83	11	284	28	0	23	47	1.52
4337939--4338180	44	5.4	45	86	5	262	28	0	22	48	1.51
4338573--4338623	22	2.3	23	76	10	61	47	0	25	27	1.53
4344422--4344452	6	5.2	6	100	0	62	67	0	0	32	0.91
4344422--4344476	18	3.2	17	85	14	62	63	0	3	32	1.12
4344420--4344476	16	3.9	15	78	21	59	64	0	3	31	1.10
4344478--4344559	18	4.4	18	71	11	60	57	6	0	36	1.24
4344460--4344554	28	3.4	29	75	20	87	56	5	1	36	1.29
4346409--4346504	46	2.1	46	90	0	147	30	26	7	36	1.83
4347717--4347764	17	2.9	17	93	3	80	52	20	0	27	1.47
4348252--4348394	9	15.6	9	74	13	96	34	1	2	62	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4348253--4348353	29	3.6	25	73	19	76	34	0	1	62	1.13
4348310--4348393	8	9.5	8	74	17	53	33	1	1	64	1.09
4348253--4348393	28	5.2	26	73	15	90	34	1	2	61	1.16
4348683--4348756	38	1.9	39	94	2	132	48	5	12	33	1.63
4348905--4348957	16	3.4	16	73	5	63	47	0	1	50	1.12
4348903--4348969	31	2.2	31	97	0	125	43	1	2	52	1.25
4375722--4375794	38	1.9	38	81	10	87	31	1	4	63	1.22
4381545--4381618	23	3.3	23	92	3	123	31	27	21	20	1.98
4386337--4386434	23	4.3	23	90	2	162	31	26	21	20	1.98
4386344--4386432	45	2.0	45	95	0	160	31	26	22	19	1.97
4408204--4408277	37	2.0	37	94	0	130	27	10	21	40	1.86
4418697--4418737	22	1.9	21	85	5	55	53	7	0	39	1.29
4421906--4422023	24	4.8	24	69	11	78	20	27	19	33	1.97
4426888--4426926	17	2.3	17	90	0	60	12	10	10	66	1.44
4426900--4427262	157	2.3	157	92	0	593	29	7	8	53	1.60
4427578--4427621	20	2.2	21	84	8	56	18	0	9	72	1.10
4427594--4427630	20	2.0	20	84	10	51	13	0	13	72	1.11
4427825--4427871	19	2.3	20	82	17	53	27	0	2	70	0.99
4441029--4441080	14	3.6	14	74	5	50	30	1	1	65	1.14
4441094--4441146	23	2.2	24	78	21	58	33	0	1	64	1.05
4441422--4441474	25	2.1	25	82	0	61	60	0	3	35	1.15
4441500--4441551	15	3.5	14	82	10	59	67	1	0	30	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4443337--4443391	25	2.3	24	84	6	67	69	1	20	9	1.25
4449339--4449376	19	2.1	18	85	9	51	60	0	7	31	1.25
4454537--4454591	17	3.5	16	72	20	53	65	0	1	32	1.03
4457002--4457074	36	2.0	36	94	0	128	30	10	23	35	1.89
4462701--4462755	22	2.6	23	83	11	64	18	0	10	70	1.15
4466354--4466382	14	2.0	15	93	6	51	27	0	0	72	0.85
4492646--4492689	6	7.3	6	100	0	88	18	0	50	31	1.47
4503208--4503325	44	2.7	44	86	2	159	17	32	19	30	1.95
4505895--4505934	14	2.9	14	84	0	53	35	7	15	42	1.75
4505918--4505957	20	2.0	20	90	0	62	30	10	10	50	1.69
4505903--4505969	34	1.9	35	87	3	100	32	8	11	46	1.72
4506583--4506621	18	2.2	18	100	0	78	46	10	0	43	1.37
4508294--4508319	12	2.2	12	100	0	52	53	7	38	0	1.30
4511323--4511365	17	2.5	17	96	0	77	55	0	18	25	1.42
4515067--4515108	9	4.1	10	80	17	50	42	0	2	54	1.13
4515065--4515114	21	2.5	21	79	20	63	40	0	2	58	1.10
4519289--4519321	6	5.5	6	100	0	66	18	0	51	30	1.46
4521731--4521793	20	3.3	19	74	14	67	68	3	3	25	1.19
4521744--4521803	20	3.2	18	73	19	52	66	5	5	23	1.31
4526175--4526377	46	4.3	48	88	7	265	35	14	21	28	1.92
4526109--4526377	98	2.7	98	93	0	457	34	14	22	28	1.93
4526341--4526486	37	4.0	37	93	1	242	36	16	21	24	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4527741--4527884	49	2.9	49	92	1	225	23	13	29	32	1.94
4531076--4531278	46	4.3	48	88	7	265	35	14	21	28	1.92
4531010--4531278	98	2.7	98	93	0	457	34	14	22	28	1.93
4531242--4531350	37	3.0	37	90	2	177	35	16	22	24	1.95
4532340--4532415	33	2.3	33	95	0	134	32	18	22	26	1.97
4532340--4532429	33	2.7	33	87	3	128	32	17	24	25	1.97
4534647--4534689	17	2.5	17	92	0	68	53	0	18	27	1.45
4536838--4536972	72	1.9	72	98	0	261	25	12	19	42	1.86
4537492--4537542	27	1.9	26	84	11	68	60	7	0	31	1.25
4540301--4540421	33	3.7	33	91	2	190	28	17	26	28	1.98
4545304--4545365	32	1.9	32	83	0	79	45	9	12	32	1.75
4559669--4559715	5	9.8	5	97	2	80	21	0	14	63	1.30
4565758--4565798	21	2.0	21	95	0	73	21	17	0	60	1.35
4565892--4565956	31	2.1	32	83	11	82	52	6	1	40	1.36
4569297--4569388	47	1.9	47	84	6	123	29	14	11	44	1.80
4579348--4579379	16	2.1	16	94	5	57	59	0	0	40	0.97
4579340--4579392	24	2.1	26	86	10	74	56	0	0	43	0.99
4579350--4579407	24	2.4	22	78	16	53	55	0	1	43	1.10
4579351--4579409	28	2.1	27	81	12	66	54	0	1	44	1.10
4580568--4580650	21	3.9	22	82	9	109	15	21	25	37	1.93
4588550--4588647	40	2.4	41	83	6	112	24	27	24	23	2.00
4597957--4598094	61	2.2	62	80	1	152	36	5	12	45	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4611397--4611443	22	2.1	21	84	7	58	34	2	10	53	1.48
4613589--4613784	103	1.9	101	86	2	275	34	16	21	27	1.95
4613589--4613818	103	2.3	101	83	3	273	33	16	22	26	1.96
4629844--4629916	33	2.3	32	81	13	89	30	2	19	47	1.63
4636371--4636405	1	35.0	1	94	0	61	2	97	0	0	0.19
4642435--4642524	45	2.0	45	100	0	180	22	11	33	33	1.89
4650793--4650817	5	5.0	5	100	0	50	60	20	0	20	1.37
4651560--4651592	17	1.9	17	88	11	50	51	0	0	48	1.00
4651956--4652061	55	2.0	54	85	7	144	42	13	4	39	1.65
4658978--4659026	18	2.7	18	90	0	71	28	8	22	40	1.82
4658978--4659026	9	5.4	9	82	0	62	28	8	22	40	1.82
4659187--4659211	12	2.1	12	100	0	50	16	24	36	24	1.94
4659281--4659326	18	2.5	19	79	10	51	30	2	0	67	1.03
4659404--4659441	19	2.0	20	89	5	60	44	0	0	55	0.99
4659404--4659442	20	2.0	20	85	10	53	46	0	0	53	1.00
4677653--4677748	19	5.2	19	81	5	124	37	13	0	48	1.43
4677653--4677748	37	2.6	37	98	0	183	37	13	0	48	1.43
4677949--4678010	19	3.3	19	72	4	63	50	1	11	37	1.48
4678427--4678489	27	2.4	27	91	2	110	49	0	7	42	1.32
4680386--4680421	3	12.0	3	93	0	63	30	33	0	36	1.58
4682866--4682912	24	1.9	25	82	4	60	72	10	10	6	1.28
4705851--4706005	61	2.6	61	82	5	163	49	10	16	23	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4710810--4710888	31	2.7	29	80	9	88	55	5	1	37	1.30
4712828--4712890	27	2.3	27	83	0	72	42	7	4	44	1.54
4712847--4712896	16	3.1	16	80	5	55	48	10	2	40	1.48
4712853--4712897	23	2.0	23	86	0	63	48	11	2	37	1.51
4723976--4724000	8	3.1	8	100	0	50	24	12	28	36	1.91
4736243--4736277	12	2.9	12	100	0	70	0	17	68	14	1.21
4736249--4736287	9	4.3	9	83	0	51	0	20	66	12	1.24
4736246--4736287	15	2.8	15	88	0	66	0	21	66	11	1.23
4738436--4738480	19	2.4	19	84	0	63	53	2	0	44	1.13
4738398--4738545	56	2.6	56	74	11	138	49	6	2	41	1.42

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144