genome.fa.s11.2.7.7.80.10.50.1000.20.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  20  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5900848--5900924	11	6.5	11	71	14	55	33	0	5	61	1.19
5900859--5900940	23	3.4	23	75	15	85	30	0	8	60	1.26
5900863--5900944	26	3.3	26	71	22	84	31	0	8	59	1.27
5900847--5900944	49	2.0	49	93	0	169	32	0	7	60	1.24
5906833--5906877	23	2.0	23	95	0	81	33	26	6	33	1.83
5914824--5915071	121	2.0	121	97	0	469	26	18	16	37	1.93
5925457--5925491	18	1.9	18	88	11	54	68	2	0	28	1.04
5925560--5925610	22	2.3	23	77	12	54	45	1	5	47	1.38
5931706--5931740	16	2.2	17	90	10	56	20	11	2	65	1.37
5948986--5949053	9	7.4	9	80	9	75	22	11	25	41	1.87
5964400--5964443	5	8.8	5	100	0	88	40	0	0	59	0.98
5964672--5964800	40	3.3	39	72	11	120	28	17	21	32	1.96
5965427--5965451	13	1.9	13	100	0	50	24	0	20	56	1.43
5968931--5969029	27	3.6	27	69	13	78	48	1	1	49	1.14
5968909--5969030	55	2.2	54	91	5	192	51	0	1	45	1.16
5969346--5969645	151	2.0	152	82	7	367	31	8	6	54	1.54
5969653--5970007	152	2.4	148	87	6	491	29	9	9	52	1.65
5969415--5969883	239	2.0	238	89	4	732	28	9	7	54	1.60
5971343--5971391	18	2.5	20	87	9	66	40	4	2	53	1.32
5984579--5984604	9	2.9	9	100	0	52	92	0	7	0	0.39
5984718--5984755	11	3.2	12	92	7	60	0	52	0	47	1.00
5985241--5985290	23	2.1	25	88	7	77	32	4	8	56	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5985227--5985298	23	3.1	23	79	13	58	31	5	9	52	1.57
5985319--5985366	24	2.0	24	84	12	62	29	4	0	66	1.10
5985627--5985686	29	2.0	31	83	6	79	38	11	5	45	1.63
5993535--5994671	51	24.6	49	64	23	424	30	18	24	25	1.98
5993816--5993866	19	2.8	17	96	0	57	31	25	25	17	1.97
5993758--5994627	89	9.8	89	100	0	1740	31	20	24	23	1.98
5993905--5993955	19	2.8	17	96	0	57	31	25	25	17	1.97
5993994--5994044	19	2.8	17	96	0	57	31	25	25	17	1.97
5994083--5994133	19	2.8	17	96	0	57	31	25	25	17	1.97
5994172--5994222	19	2.8	17	96	0	57	31	25	25	17	1.97
5994261--5994311	19	2.8	17	96	0	57	31	25	25	17	1.97
5994350--5994400	19	2.8	17	96	0	57	31	25	25	17	1.97
5994439--5994489	19	2.8	17	96	0	57	31	25	25	17	1.97
5994528--5994578	19	2.8	17	96	0	57	31	25	25	17	1.97
5994559--5994671	50	2.2	51	95	4	203	30	18	23	26	1.98
5997494--5997609	58	2.0	58	98	0	223	50	3	6	38	1.46
6001707--6001750	19	2.4	19	84	3	54	40	2	6	50	1.42
6001718--6001765	19	2.4	20	89	6	71	37	0	8	54	1.31
6001719--6001776	19	2.9	20	80	12	66	37	0	5	56	1.21
6007886--6007918	16	2.0	17	88	5	50	45	0	0	54	0.99
6008243--6008293	21	2.5	20	76	17	59	41	9	0	49	1.36
6008250--6008293	22	2.0	23	90	4	72	38	9	0	52	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6010637--6010973	112	3.0	112	99	0	656	41	16	8	34	1.78
6015228--6015252	5	5.0	5	100	0	50	0	0	20	80	0.72
6016867--6016943	39	2.0	38	89	2	118	35	1	6	57	1.33
6018569--6018620	16	3.2	16	94	0	95	23	0	38	38	1.55
6018733--6018781	24	2.0	24	100	0	98	36	16	12	34	1.86
6018767--6019083	157	2.0	157	96	0	580	44	3	4	47	1.40
6019017--6019058	15	2.7	16	82	14	52	52	2	0	45	1.13
6019026--6019067	15	2.9	15	82	10	52	52	0	0	47	1.00
6019015--6019230	107	2.0	109	96	1	400	49	5	1	43	1.36
6019120--6019165	16	2.9	16	78	12	51	52	2	0	45	1.13
6019120--6019174	15	3.7	15	79	13	53	52	1	0	45	1.11
6019054--6019223	37	4.7	35	67	20	100	48	6	1	43	1.39
6019475--6019538	26	2.4	26	82	10	76	56	0	0	43	0.99
6031098--6031441	86	4.0	86	98	0	643	35	19	6	38	1.77
6041039--6041130	44	2.1	44	93	0	157	27	11	36	23	1.90
6041479--6041511	14	2.4	14	90	10	50	27	0	0	72	0.85
6053057--6053109	19	2.9	18	73	13	54	67	0	0	32	0.91
6060124--6060183	21	2.8	20	80	9	66	38	0	1	60	1.07
6068597--6068689	18	5.2	18	90	0	141	30	17	24	27	1.97
6068597--6068689	36	2.6	36	92	0	159	30	17	24	27	1.97
6072875--6072912	20	1.9	20	84	10	51	57	5	5	31	1.43
6072944--6073014	37	1.9	37	91	0	115	45	4	9	40	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6073107--6073140	3	11.3	3	100	0	68	67	0	0	32	0.91
6078940--6078984	21	2.3	19	88	11	65	15	2	15	66	1.35
6078939--6078985	19	2.3	21	85	7	71	14	2	14	68	1.31
6079159--6079201	23	1.9	22	90	4	68	62	6	4	25	1.40
6079576--6079621	24	2.0	24	83	12	60	65	0	2	32	1.05
6088555--6088624	30	2.3	30	79	16	74	35	7	2	54	1.43
6093912--6094040	64	2.0	64	100	0	258	42	24	13	18	1.87
6097545--6097755	105	2.0	105	98	0	404	31	20	22	25	1.98
6105593--6105622	13	2.3	13	100	0	60	60	13	6	20	1.55
6110582--6110610	5	5.8	5	100	0	58	58	0	0	41	0.98
6117080--6117113	14	2.4	14	95	5	59	26	0	0	73	0.83
6117080--6117113	7	4.7	7	85	7	50	26	0	0	73	0.83
6118393--6118456	34	1.9	33	87	6	85	45	3	1	50	1.27
6126944--6126968	5	5.0	5	100	0	50	40	0	0	60	0.97
6127072--6127119	22	2.2	21	85	3	69	41	0	0	58	0.98
6129426--6129463	16	2.4	16	86	8	51	39	18	2	39	1.65
6137788--6137821	17	2.0	17	88	0	50	47	8	5	38	1.59
6144696--6144763	34	2.0	34	97	0	127	44	19	2	33	1.66
6147717--6147780	31	2.0	32	84	3	85	26	23	26	23	2.00
6156084--6156114	11	2.8	11	95	0	53	38	0	12	48	1.42
6168268--6168387	61	2.0	61	93	3	206	40	13	15	30	1.85
6171660--6171700	22	1.9	21	85	5	55	41	0	2	56	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6175398--6175450	21	2.5	21	84	9	63	50	0	1	47	1.12
6175474--6175533	22	2.7	21	80	16	68	58	0	3	38	1.15
6175488--6175591	23	4.4	23	70	18	81	58	0	2	38	1.13
6175484--6175561	31	2.5	31	77	20	92	58	0	3	37	1.16
6178312--6178519	91	2.3	91	93	0	344	46	3	4	46	1.39
6178434--6178494	28	2.2	28	85	5	81	45	0	3	50	1.17
6178352--6178494	44	3.2	43	69	20	121	46	2	3	48	1.31
6178509--6178565	27	2.2	25	81	6	60	47	3	1	47	1.29
6179611--6181586	442	4.5	436	78	10	1828	27	16	19	36	1.93
6194023--6194073	20	2.5	20	71	6	50	31	3	3	60	1.33
6194061--6194098	19	2.0	19	89	0	58	47	2	0	50	1.15
6198370--6198423	27	2.0	28	88	3	83	22	25	27	24	2.00
6198398--6198566	75	2.3	74	88	1	248	22	20	27	30	1.98
6223244--6223460	105	2.1	101	82	5	256	31	14	25	28	1.95
6225474--6225550	17	4.5	16	73	15	57	62	1	0	36	1.04
6227453--6227503	19	2.6	20	84	6	77	31	0	3	64	1.11
6232663--6232703	21	2.0	21	90	0	64	29	21	29	19	1.98
6240935--6240972	19	2.1	19	85	5	51	39	0	7	52	1.31
6245341--6245373	11	3.0	11	100	0	66	54	0	0	45	0.99
6246443--6246484	22	1.9	22	100	0	84	19	30	21	28	1.97
6246443--6246496	22	2.4	22	90	3	81	22	29	20	27	1.98
6246763--6246819	25	2.3	25	87	0	78	42	3	12	42	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6249189--6249222	18	1.9	18	88	5	52	44	2	0	52	1.16
6255332--6255371	21	1.9	21	89	0	62	52	15	12	20	1.74
6257357--6257387	6	5.0	6	96	4	53	32	16	32	19	1.94
6260071--6260099	13	2.1	14	93	6	51	68	3	0	27	1.05
6262408--6262460	25	2.2	23	86	6	70	26	11	1	60	1.41
6263837--6264174	169	2.0	170	98	0	651	32	21	11	34	1.89
6275776--6275895	60	2.0	60	95	0	213	34	22	20	23	1.97
6275969--6276450	44	10.9	44	72	7	275	27	16	26	29	1.97
6275949--6276404	132	3.5	132	96	0	813	27	16	26	29	1.97
6276516--6276725	43	4.8	43	67	11	131	30	20	21	27	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144