genome.fa.s11.2.7.7.80.10.50.1000.59.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  59  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18067968--18068524	44	12.0	44	77	11	495	30	19	17	32	1.95
18067968--18068424	95	4.9	95	87	2	595	30	20	17	31	1.96
18067970--18068527	139	4.0	132	76	11	474	30	19	17	32	1.95
18072151--18072189	12	3.2	12	85	0	51	20	23	5	51	1.67
18074763--18074824	30	2.0	30	87	3	88	35	0	40	24	1.55
18075321--18075695	189	2.0	189	90	0	588	27	20	18	33	1.96
18081098--18081141	19	2.3	20	88	7	65	43	6	22	27	1.78
18088197--18088240	22	2.1	21	84	16	56	27	4	0	68	1.09
18099418--18099476	24	2.5	24	88	0	82	37	16	27	18	1.93
18099513--18099561	26	1.9	25	91	4	80	34	22	26	16	1.95
18100023--18100062	21	2.0	21	85	14	57	42	12	5	40	1.64
18103955--18103983	6	4.8	6	100	0	58	13	0	51	34	1.42
18106076--18106127	10	4.8	10	77	15	50	71	9	13	5	1.30
18107907--18107950	17	2.5	17	81	3	52	15	0	2	81	0.78
18109660--18109699	14	3.0	14	89	7	57	0	15	0	85	0.61
18110057--18110149	20	4.4	21	70	16	68	55	5	0	38	1.23
18112463--18112521	3	19.7	3	81	6	66	35	1	1	61	1.16
18115557--18115609	28	2.1	27	83	16	69	26	3	5	64	1.33
18117572--18117599	4	7.0	4	100	0	56	25	0	25	50	1.50
18121092--18121131	21	2.0	20	95	5	71	15	0	5	80	0.88
18127061--18127087	11	2.5	11	100	0	54	29	0	0	70	0.88
18127336--18127366	13	2.3	14	94	5	55	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18127402--18127431	16	1.9	16	93	6	53	13	6	0	80	0.91
18129089--18129157	31	2.3	31	92	2	113	24	17	5	52	1.66
18138501--18138577	37	2.1	37	80	9	86	53	2	3	40	1.33
18138615--18138654	21	1.9	21	90	10	64	42	45	2	10	1.51
18142359--18142417	11	5.6	11	76	9	52	32	32	0	35	1.58
18143866--18143903	5	7.6	5	100	0	76	39	0	0	60	0.97
18144721--18144772	24	2.2	24	89	6	79	40	0	3	55	1.18
18146339--18146400	5	13.2	5	77	19	71	61	1	0	37	1.06
18146364--18146397	7	4.7	7	85	7	50	61	0	0	38	0.96
18150182--18150222	3	13.7	3	84	0	55	63	2	0	34	1.08
18150166--18150225	21	2.9	20	77	2	57	60	3	0	36	1.14
18151035--18151082	5	9.6	5	95	0	87	60	2	0	37	1.09
18151758--18151815	16	3.4	18	75	18	61	25	17	29	27	1.97
18151762--18151826	32	2.0	32	96	0	121	26	15	30	27	1.96
18152604--18152723	32	3.8	32	81	7	145	39	8	11	40	1.72
18156214--18156282	16	4.2	16	96	3	129	24	0	37	37	1.56
18156214--18156282	33	2.1	32	97	2	129	24	0	37	37	1.56
18156263--18156376	45	2.6	45	82	10	132	30	5	28	35	1.79
18156518--18156554	19	2.0	19	85	15	51	54	0	0	45	1.00
18156596--18156781	59	3.1	58	69	19	157	51	3	2	42	1.34
18156498--18156787	120	2.4	120	89	3	456	49	4	2	43	1.35
18162744--18162808	20	3.2	20	77	2	67	56	1	1	40	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18162776--18162847	21	3.5	20	74	12	74	58	0	5	36	1.22
18170835--18170885	18	2.8	18	75	0	66	13	43	3	39	1.63
18173011--18173038	13	2.2	13	100	0	56	53	14	0	32	1.41
18173439--18173478	20	2.0	20	90	0	62	50	7	10	32	1.64
18173427--18173493	34	1.9	35	90	3	109	46	10	8	34	1.70
18176145--18176183	17	2.2	19	86	9	55	46	0	5	48	1.24
18181691--18181750	26	2.4	25	83	5	77	40	8	1	50	1.43
18182136--18182196	28	2.2	28	82	8	72	18	31	19	31	1.96
18182255--18182319	28	2.4	27	86	2	85	49	1	12	36	1.50
18182526--18182555	14	2.1	15	93	6	53	43	0	0	56	0.99
18185907--18185954	14	3.4	14	77	5	51	70	4	2	22	1.15
18187574--18188240	317	2.1	317	83	4	846	29	26	16	26	1.97
18194902--18194947	22	2.1	22	84	8	58	65	0	0	34	0.93
18194955--18195033	32	2.5	32	79	2	88	35	16	13	34	1.88
18212571--18212612	21	2.0	22	85	4	59	33	9	23	33	1.87
18212985--18213061	14	5.0	15	71	20	52	42	14	9	33	1.77
18213001--18213040	20	2.0	20	90	0	62	50	12	10	27	1.72
18212989--18213055	34	1.9	35	90	3	109	46	13	8	31	1.74
18218031--18218057	3	9.0	3	100	0	54	33	0	0	66	0.92
18221833--18221877	18	2.3	20	81	14	58	60	0	6	33	1.23
18221840--18221877	18	2.1	19	90	5	60	60	0	5	34	1.19
18224216--18224371	42	3.7	42	77	16	169	30	26	18	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18231549--18231704	42	3.7	42	77	16	169	30	26	18	24	1.98
18233955--18233993	16	2.4	16	82	0	51	48	0	10	41	1.37
18233950--18233999	26	1.9	26	83	0	64	48	2	10	40	1.48
18235507--18235748	100	2.4	100	85	1	333	28	21	19	30	1.98
18235507--18235748	50	4.8	50	72	1	162	28	21	19	30	1.98
18235862--18236030	87	1.9	88	86	3	243	26	24	20	28	1.99
18247522--18247562	5	8.2	5	88	0	64	75	2	2	19	1.03
18248646--18248695	22	2.3	22	86	3	66	14	26	50	10	1.73
18249103--18249139	18	2.1	18	89	0	56	62	2	5	29	1.31
18250782--18250858	38	2.0	38	100	0	154	37	2	5	54	1.37
18265992--18266026	5	6.6	5	87	12	52	77	0	0	22	0.78
18275222--18275260	20	2.0	20	89	0	60	38	12	15	33	1.85
18278199--18278223	7	3.6	7	100	0	50	24	0	16	60	1.36
18279286--18279382	42	2.3	42	83	0	122	18	28	25	26	1.98
18280256--18280325	35	2.0	35	97	0	131	42	24	5	27	1.77
18285381--18285431	21	2.4	22	80	6	59	64	0	3	31	1.11
18285476--18285526	23	2.2	23	100	0	102	56	11	3	27	1.52
18289949--18289985	19	2.0	19	89	5	58	35	0	8	56	1.29
18289954--18290001	20	2.4	20	80	16	55	35	0	10	54	1.35
18298461--18299063	44	13.7	45	63	15	134	28	23	18	29	1.98
18298436--18299134	132	5.3	132	96	0	1263	29	23	18	28	1.98
18301343--18301403	26	2.3	26	83	5	70	57	8	14	19	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18303322--18303347	13	2.0	13	100	0	52	61	7	7	23	1.49
18304622--18304674	21	2.7	19	86	11	79	37	18	11	32	1.87
18304596--18304670	21	3.6	21	76	18	75	38	20	9	32	1.84
18313152--18313193	21	2.0	20	86	13	59	57	2	2	38	1.25
18319433--18319468	4	9.0	4	100	0	72	25	0	50	25	1.50
18320860--18320916	29	2.0	29	85	0	78	47	5	7	40	1.53
18321762--18321802	18	2.3	19	87	8	59	70	4	2	21	1.18
18324208--18324269	30	2.1	30	96	0	115	33	6	9	50	1.61
18325977--18326039	17	3.8	16	70	8	54	57	3	0	39	1.15
18326093--18326134	9	4.4	10	80	20	54	45	0	0	54	0.99
18327275--18327306	14	2.2	15	94	5	57	50	0	3	46	1.17
18330780--18331155	93	4.0	93	100	0	752	39	17	11	31	1.86
18333357--18333408	10	5.3	10	81	4	52	55	0	3	40	1.18
18334848--18334885	17	2.2	17	86	9	51	13	5	39	42	1.66
18335343--18335970	44	14.6	42	70	12	353	26	20	21	30	1.98
18335262--18335975	129	5.5	129	89	0	1007	27	20	21	31	1.98
18335288--18335977	259	2.7	259	88	0	1024	26	20	21	31	1.98
18335984--18336292	49	6.2	49	77	4	235	25	19	21	33	1.97
18336119--18336303	99	1.9	99	87	2	273	25	21	21	31	1.98
18335984--18336306	148	2.2	148	82	0	376	25	19	21	33	1.97
18336350--18336543	89	2.2	89	88	1	282	25	22	24	27	2.00
18343247--18343285	12	3.3	12	85	3	53	51	0	7	41	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18344535--18344577	22	2.0	22	86	9	61	16	11	11	60	1.59
18344704--18344741	17	2.2	17	86	9	51	13	5	39	42	1.66
18345682--18345724	20	2.1	21	86	4	61	27	2	4	65	1.25
18345851--18346104	87	2.9	86	84	5	289	32	13	9	44	1.75
18346126--18346554	87	4.9	86	84	2	484	44	11	13	30	1.80
18346674--18346726	20	2.5	20	84	6	61	62	3	1	32	1.24
18347158--18347198	20	2.0	20	85	0	55	51	7	9	31	1.62
18348836--18348881	3	15.3	3	100	0	92	34	0	0	65	0.93
18349411--18349435	13	1.9	13	100	0	50	20	0	0	80	0.72
18352074--18352120	21	2.2	22	88	3	69	57	4	2	36	1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144