genome.fa.s11.2.7.7.80.10.50.1000.114.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  114  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35428190--35428329	32	4.4	32	78	6	133	40	23	19	17	1.91
35428476--35428557	24	3.5	23	83	5	92	50	24	4	20	1.68
35428593--35428803	27	7.8	26	78	7	131	24	20	18	36	1.95
35428593--35428803	54	3.9	54	77	7	189	24	20	18	36	1.95
35428683--35428751	26	2.6	27	86	4	95	20	20	18	40	1.92
35428611--35428803	107	1.8	107	85	4	273	24	21	17	36	1.94
35440343--35440383	20	2.0	20	85	0	55	26	4	2	65	1.25
35441334--35441367	15	2.3	15	90	10	52	61	2	2	32	1.26
35443583--35443695	40	2.9	40	86	2	149	37	15	23	23	1.93
35443747--35443893	48	3.0	48	84	8	192	18	29	7	44	1.77
35444149--35444174	9	2.9	9	100	0	52	23	0	0	76	0.78
35446138--35446166	13	2.1	14	93	6	51	34	3	6	55	1.44
35447902--35447927	13	2.0	13	100	0	52	61	0	0	38	0.96
35447979--35448077	9	11.0	9	75	12	78	45	17	1	36	1.55
35447988--35448077	36	2.5	36	98	0	171	46	16	0	36	1.47
35452146--35452194	19	2.6	19	90	0	71	38	14	18	28	1.90
35452173--35452217	23	2.0	23	86	4	65	42	6	17	33	1.76
35453058--35453290	24	10.3	23	70	16	116	33	7	3	55	1.44
35453133--35453201	21	3.2	20	80	17	75	34	5	1	57	1.31
35453249--35453286	17	2.2	18	85	4	51	34	5	2	57	1.35
35455138--35455576	44	9.7	44	71	13	259	29	20	18	30	1.97
35456462--35456507	10	4.4	11	81	8	51	4	10	2	82	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35456494--35456537	20	2.2	20	95	0	79	2	13	0	84	0.73
35456467--35456537	7	9.7	7	72	24	58	2	12	1	83	0.83
35456468--35456528	5	11.8	5	78	18	54	3	13	1	81	0.88
35461949--35462083	50	2.7	50	84	3	173	22	20	27	29	1.98
35469154--35469241	36	2.4	36	88	1	131	20	3	22	53	1.60
35470014--35470096	41	2.0	41	100	0	166	14	12	36	37	1.83
35477084--35477126	22	2.0	22	100	0	86	41	23	6	27	1.80
35479959--35480030	37	2.0	37	89	8	112	30	26	18	25	1.98
35483842--35483867	10	2.6	10	100	0	52	57	0	0	42	0.98
35485402--35485513	61	1.9	58	88	5	170	51	5	3	39	1.42
35485460--35485604	68	2.1	71	83	5	179	53	6	2	37	1.41
35485785--35485815	15	2.1	15	100	0	62	19	19	22	38	1.93
35485951--35486100	65	2.3	65	97	1	282	46	8	1	44	1.41
35487422--35487466	21	2.0	23	83	8	58	42	2	4	51	1.34
35487713--35487779	15	4.5	15	79	5	64	23	1	41	32	1.64
35488229--35488301	21	3.4	21	75	9	85	24	0	38	36	1.56
35490125--35490163	12	3.2	12	96	0	69	20	10	30	38	1.86
35490836--35490866	10	3.1	10	95	0	53	16	19	12	51	1.76
35492733--35492984	43	5.9	43	92	2	384	21	17	31	30	1.96
35495737--35495837	50	2.0	50	96	0	184	40	12	6	39	1.70
35498202--35498375	88	2.0	88	81	4	208	32	10	13	43	1.78
35498282--35498506	81	2.8	82	83	4	242	29	11	13	45	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35498338--35498506	82	2.1	82	86	6	236	30	10	11	46	1.74
35501321--35501373	20	2.7	20	93	0	88	30	9	7	52	1.61
35502714--35502766	26	2.0	26	100	0	106	24	15	18	41	1.89
35508807--35508845	17	2.3	17	91	8	62	23	41	7	28	1.82
35509525--35509572	14	3.6	13	86	10	62	54	14	4	27	1.59
35518619--35518664	24	1.9	24	86	8	67	39	10	10	39	1.76
35518757--35518828	20	3.5	20	67	16	58	45	8	2	43	1.48
35519157--35519210	20	2.8	20	71	2	56	12	18	22	46	1.83
35523444--35523568	66	1.9	66	81	6	155	26	8	23	41	1.83
35526825--35526939	37	3.1	37	87	0	158	42	25	14	17	1.87
35534657--35534689	15	2.1	16	88	5	50	30	3	3	63	1.24
35536487--35536546	28	2.1	28	87	0	84	28	18	13	40	1.88
35540706--35540754	24	2.0	24	92	0	80	28	16	28	26	1.97
35544834--35544873	21	1.9	21	84	0	53	10	5	35	50	1.58
35555762--35555816	21	2.6	21	91	0	83	30	25	14	29	1.95
35559085--35559125	21	2.0	21	85	4	57	9	17	29	43	1.80
35559184--35559359	43	4.1	43	83	1	113	30	30	18	21	1.97
35559227--35559470	87	2.8	86	82	5	296	26	31	18	23	1.98
35559205--35559493	43	6.7	42	79	3	272	28	31	18	21	1.97
35559184--35559493	130	2.4	129	81	3	363	28	30	18	22	1.98
35559837--35559880	21	2.1	21	82	0	52	6	40	15	36	1.74
35559882--35560021	66	2.1	66	88	2	201	15	26	16	41	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35563283--35564002	120	6.0	119	74	10	603	40	4	6	48	1.49
35563710--35563761	15	3.6	15	80	12	56	44	0	1	53	1.11
35563959--35564000	15	2.7	16	82	14	52	45	0	2	52	1.13
35563950--35563991	15	2.9	15	82	10	52	47	0	0	52	1.00
35563934--35564249	157	2.0	156	95	0	560	47	4	3	44	1.41
35564372--35564423	16	3.2	16	94	0	95	38	38	0	23	1.55
35572790--35572879	41	2.2	41	85	0	126	30	3	16	50	1.62
35572832--35572911	25	3.2	25	73	8	74	27	3	18	50	1.64
35572774--35572919	66	2.2	66	82	4	179	30	3	16	50	1.62
35572790--35572920	16	8.1	16	69	15	65	29	3	16	50	1.63
35572804--35572919	41	2.8	41	85	0	133	28	3	17	50	1.62
35572970--35573010	21	2.0	21	90	4	66	43	2	4	48	1.37
35573002--35573067	25	2.6	25	76	4	62	25	4	19	50	1.67
35573081--35573541	20	22.8	20	65	18	168	38	4	9	46	1.59
35573159--35573318	66	2.4	66	98	0	311	35	4	11	48	1.59
35573081--35573460	208	1.8	208	98	0	733	37	5	10	46	1.60
35573225--35573596	142	2.6	139	97	0	645	38	4	10	46	1.59
35573081--35573530	208	2.2	205	91	4	700	38	4	10	46	1.59
35573842--35573920	22	3.8	21	74	19	67	55	5	5	34	1.44
35573900--35573930	15	2.1	15	100	0	62	48	6	6	38	1.55
35576205--35576240	15	2.3	16	90	4	56	36	2	0	61	1.11
35576318--35576350	16	2.1	16	100	0	66	27	6	6	60	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35576364--35576553	94	2.0	94	97	0	362	44	10	4	41	1.58
35577125--35577254	7	18.0	7	74	6	71	35	43	0	20	1.52
35577119--35577166	22	2.2	22	84	0	60	37	43	0	18	1.51
35577114--35577202	36	2.5	36	83	3	108	38	43	0	17	1.50
35577726--35577914	41	4.6	39	79	6	189	30	28	21	19	1.98
35577718--35577914	82	2.4	81	85	8	265	29	28	22	19	1.98
35577967--35578084	40	3.0	39	73	3	103	24	19	19	36	1.95
35579048--35579294	137	1.8	137	81	1	316	19	19	27	33	1.96
35580886--35582561	736	2.3	736	92	1	2818	28	16	21	33	1.95
35593181--35595405	732	3.0	731	89	2	3379	27	15	21	35	1.94
35596977--35597032	29	1.9	29	88	0	85	42	17	25	14	1.87
35596989--35597048	29	2.0	29	90	6	93	41	15	26	16	1.88
35596827--35597043	120	1.8	120	86	0	317	39	16	23	19	1.92
35598197--35598244	20	2.4	20	100	0	96	16	20	37	25	1.93
35600845--35601023	48	3.7	48	81	5	182	21	31	20	26	1.98
35600849--35601023	96	1.8	96	82	0	224	22	30	20	26	1.98
35600945--35601043	48	2.1	48	88	0	144	22	33	22	22	1.97
35608227--35608425	48	4.2	48	78	6	188	23	29	20	27	1.99
35615455--35615485	11	2.7	11	95	5	53	19	3	0	77	0.90
35617737--35617769	17	1.9	17	93	0	57	15	12	15	57	1.65
35624492--35624547	29	1.9	29	92	0	94	42	17	26	12	1.85
35624492--35624560	29	2.3	28	83	11	84	44	15	26	13	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35628071--35628121	20	2.6	19	76	14	50	13	5	7	72	1.26
35631821--35631860	18	2.3	18	82	4	55	47	10	7	35	1.65
35634727--35634850	59	2.1	60	89	1	187	40	10	16	33	1.82
35636831--35636925	16	5.9	16	66	10	59	29	1	2	67	1.09
35636889--35636935	24	1.9	25	82	4	60	34	0	0	65	0.93
35637648--35637838	98	1.9	98	92	0	319	38	24	9	27	1.87
35638690--35638747	22	2.6	22	84	7	73	43	17	3	36	1.66
35638703--35638819	19	5.8	19	84	8	117	37	16	10	35	1.82
35638726--35638819	19	4.8	19	88	5	143	36	15	11	36	1.85
35638726--35638819	40	2.4	38	91	3	143	36	15	11	36	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144