genome.fa.s11.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  119  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36914750--36914775	6	4.3	6	100	0	52	69	0	0	30	0.89
36928812--36928954	27	5.3	27	82	1	180	43	20	19	16	1.88
36928812--36928954	54	2.6	54	87	2	207	43	20	19	16	1.88
36929129--36929178	26	2.0	25	96	4	91	16	24	24	36	1.94
36929300--36929429	28	4.6	28	92	0	215	26	25	21	26	1.99
36931861--36931951	46	2.0	46	95	0	164	25	21	26	26	2.00
36935300--36935552	27	9.4	27	81	5	253	42	19	18	19	1.90
36935725--36935776	26	2.0	26	84	0	68	11	15	25	48	1.78
36942603--36942737	62	2.2	62	80	10	152	44	8	20	26	1.79
36942840--36942893	25	2.2	25	89	0	81	27	9	16	46	1.78
36943545--36943583	10	4.1	9	83	9	51	53	2	2	41	1.28
36949726--36949923	99	2.0	99	98	0	387	34	10	14	40	1.80
36949773--36949927	50	3.1	50	59	15	113	34	7	14	43	1.74
36956582--36956629	16	2.9	16	84	3	60	77	2	0	20	0.88
36968737--36968774	3	12.7	3	88	0	58	31	2	2	63	1.22
36973017--36973100	24	3.6	23	75	15	75	77	8	3	10	1.10
36973975--36974028	13	4.0	14	83	7	76	68	0	18	12	1.21
36973975--36974032	20	2.8	20	86	2	89	67	0	20	12	1.22
36973975--36974028	7	8.0	7	83	8	76	68	0	18	12	1.21
36975642--36976370	44	15.7	44	67	18	349	33	18	20	27	1.96
36975510--36976352	142	5.9	142	93	0	1368	33	17	21	27	1.96
36976426--36976761	50	6.7	50	68	3	210	32	25	20	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36976421--36976773	99	3.5	96	78	6	348	32	24	20	22	1.97
36978207--36978240	3	11.3	3	87	0	50	32	2	2	61	1.26
36984301--36984343	20	2.1	21	86	4	61	37	4	11	46	1.61
36985993--36986050	31	1.9	31	89	3	91	27	6	15	50	1.70
36986087--36986126	20	2.0	20	90	0	62	67	2	0	30	1.04
36986065--36986177	28	4.1	29	72	22	84	62	4	0	31	1.21
36986095--36986303	97	2.1	98	95	3	377	61	2	3	32	1.27
36986371--36986463	9	9.6	9	74	12	60	66	4	2	26	1.21
36986371--36986464	10	9.5	10	71	11	68	67	4	2	26	1.21
36986741--36986794	19	3.0	18	78	15	67	62	1	0	35	1.06
36986755--36986780	8	3.2	8	100	0	52	61	0	0	38	0.96
36986866--36986893	12	2.3	12	100	0	56	25	7	21	46	1.76
36992932--36993003	27	2.7	27	72	10	76	33	19	13	33	1.91
36993201--36993245	22	2.0	22	83	8	56	22	4	46	26	1.70
36994268--36994301	14	2.3	15	90	5	52	61	0	2	35	1.11
36994418--36994482	6	10.5	6	80	6	67	78	4	4	12	1.06
36994418--36994471	26	2.1	25	82	3	63	79	5	1	12	0.98
36995964--36996527	213	2.6	212	87	3	765	27	24	18	29	1.98
36996470--36996873	128	3.1	128	93	1	666	25	24	19	30	1.98
36998102--36998142	7	5.9	7	88	11	66	14	14	0	70	1.16
36998100--36998142	21	2.1	20	95	4	77	16	16	0	67	1.24
36999030--36999069	6	6.7	6	91	0	53	15	7	10	67	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36999030--36999080	18	2.9	18	76	2	59	11	9	7	70	1.33
36999838--36999874	19	2.0	20	84	10	51	56	5	10	27	1.55
37001141--37001286	73	2.0	73	98	0	283	27	30	21	20	1.98
37003295--37003331	3	12.3	3	100	0	74	67	0	0	32	0.91
37003358--37003416	6	9.5	6	80	14	66	77	5	3	13	1.05
37003356--37003405	26	1.9	26	83	0	64	78	6	2	14	1.03
37004796--37004843	17	3.1	16	82	8	55	8	22	4	64	1.38
37005295--37005344	4	12.0	4	80	16	57	76	0	0	24	0.80
37005295--37005344	17	3.0	17	83	13	68	76	0	0	24	0.80
37005294--37005344	21	2.4	21	87	9	77	76	0	0	23	0.79
37006505--37006689	51	3.7	50	81	3	219	25	17	25	30	1.97
37006512--37006593	26	3.2	26	64	19	73	25	15	26	31	1.96
37006511--37006699	102	1.9	101	91	3	308	25	16	26	30	1.97
37010683--37010960	137	2.0	137	97	0	520	35	10	17	36	1.85
37014506--37014557	15	3.6	15	80	12	56	44	0	1	53	1.11
37014444--37014673	120	1.9	120	100	0	460	41	1	6	49	1.40
37014454--37014641	61	3.1	61	70	14	208	42	1	7	48	1.40
37014635--37014676	15	2.7	16	82	14	52	45	0	2	52	1.13
37014626--37014667	15	2.9	15	82	10	52	47	0	0	52	1.00
37014895--37014959	16	4.1	16	93	0	112	35	36	0	27	1.57
37016237--37016269	14	2.4	14	94	0	57	42	0	0	57	0.98
37020402--37020685	59	4.7	58	67	18	150	43	2	4	49	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37020395--37020685	120	2.4	122	89	4	462	43	2	4	49	1.35
37020629--37020665	19	2.0	19	85	15	51	45	0	0	54	1.00
37020811--37020915	44	2.5	40	76	15	113	31	29	4	34	1.78
37020809--37020918	45	2.6	44	81	8	131	31	29	5	33	1.80
37020897--37020945	16	3.1	16	93	0	80	26	36	2	34	1.68
37021353--37021398	21	2.2	21	84	7	58	56	6	4	32	1.45
37035783--37035831	21	2.3	20	80	13	55	28	20	26	24	1.99
37036912--37036954	21	2.0	21	82	8	52	32	16	0	51	1.45
37048619--37048650	17	1.9	16	93	6	55	43	6	9	40	1.62
37048722--37048747	12	2.2	12	100	0	52	7	0	7	84	0.77
37051141--37051404	40	6.7	40	89	5	360	25	27	21	25	1.99
37059370--37059518	40	3.7	40	96	0	262	21	25	20	32	1.97
37067834--37067873	18	2.1	18	86	9	53	15	10	2	72	1.21
37070629--37070680	27	1.9	27	92	0	86	34	26	19	19	1.95
37070628--37070687	27	2.2	27	84	0	84	38	25	18	18	1.93
37070850--37070904	26	2.1	26	93	0	92	23	18	18	40	1.91
37073200--37073233	17	2.0	17	88	0	50	47	0	5	47	1.26
37074455--37074496	21	2.0	21	95	0	75	42	16	9	30	1.80
37077517--37077630	44	2.6	44	100	0	228	22	24	22	29	1.99
37077167--37077722	217	2.6	217	89	2	841	27	22	21	29	1.99
37080180--37080441	39	6.7	40	88	7	337	24	27	22	25	2.00
37081519--37081545	14	1.9	14	100	0	54	0	7	3	88	0.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37088184--37088229	24	1.9	24	86	0	65	8	26	19	45	1.79
37091613--37092032	202	2.1	202	100	0	840	34	17	14	33	1.90
37095698--37095736	6	6.3	6	88	5	60	15	20	0	64	1.30
37095698--37095736	18	2.1	19	95	4	71	15	20	0	64	1.30
37097511--37097638	61	2.1	61	83	7	156	50	9	2	37	1.47
37103912--37103963	27	1.9	27	92	0	86	50	9	15	25	1.74
37104443--37104609	41	4.1	41	88	0	237	34	22	22	20	1.97
37104969--37105005	18	2.1	18	100	0	74	21	0	21	56	1.42
37107575--37107612	16	2.3	16	90	4	58	52	2	2	42	1.29
37115847--37115881	18	1.9	18	94	0	61	37	2	31	28	1.72
37123817--37123865	26	1.9	25	84	12	64	40	8	18	32	1.80
37148223--37148268	19	2.4	18	82	7	56	6	15	0	78	0.95
37149414--37149613	80	2.5	80	80	0	247	38	13	9	39	1.75
37152888--37152933	10	4.8	10	78	7	51	71	2	10	15	1.23
37152893--37152933	19	2.2	19	90	0	64	70	2	12	14	1.26
37152980--37153025	4	11.8	4	86	9	60	78	0	21	0	0.76
37153837--37154118	139	2.0	139	97	0	537	36	8	24	29	1.85
37154133--37154242	23	5.1	21	82	7	123	19	20	22	38	1.94
37154134--37154242	44	2.5	42	82	7	121	18	20	22	38	1.93
37157471--37157601	67	2.0	67	89	3	201	29	31	16	22	1.96
37157724--37157871	57	2.5	60	84	9	196	22	25	22	30	1.99
37160083--37160117	18	1.9	18	88	11	54	17	17	0	65	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37167628--37167665	12	3.2	12	82	14	51	15	2	0	81	0.80
37167794--37167941	76	2.0	75	95	1	269	18	12	18	49	1.79
37168515--37168545	16	1.9	16	100	0	62	38	6	6	48	1.55
37168597--37168852	90	2.9	90	98	0	496	23	12	28	35	1.92
37169102--37169142	18	2.4	17	84	8	55	19	12	14	53	1.72
37174641--37174682	19	2.2	19	87	8	59	42	9	0	47	1.36
37174641--37174678	9	3.8	10	89	10	51	42	10	0	47	1.38
37177637--37177674	19	2.0	19	85	10	51	34	2	0	63	1.09
37180302--37180330	14	2.1	14	100	0	58	41	0	0	58	0.98
37180760--37180798	20	2.0	19	85	5	51	56	7	0	35	1.28

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144