genome.fa.s11.2.7.7.80.10.50.1000.136.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  136  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42183133--42183162	15	2.0	15	100	0	60	40	0	0	60	0.97
42183718--42183800	21	3.9	22	76	10	84	38	39	0	21	1.54
42183741--42183768	14	2.0	14	100	0	56	35	50	0	14	1.43
42183717--42183801	7	12.0	7	67	16	50	38	40	0	21	1.53
42183784--42183818	15	2.4	14	86	9	52	40	37	0	22	1.55
42184121--42184159	7	5.6	7	90	0	51	28	48	2	20	1.62
42184901--42185223	41	7.9	41	84	4	420	29	26	22	20	1.99
42184919--42185221	123	2.5	124	90	1	475	31	26	23	19	1.98
42185260--42185393	40	3.4	40	80	6	123	22	21	19	36	1.95
42185600--42185642	17	2.3	19	84	11	54	62	4	4	27	1.35
42200621--42200645	6	4.2	6	100	0	50	0	32	0	68	0.90
42207751--42207799	18	2.8	17	82	17	57	44	22	0	32	1.53
42214646--42214706	26	2.4	26	94	2	106	55	1	1	40	1.19
42215367--42215430	18	3.5	18	83	14	78	29	1	4	64	1.23
42215372--42215441	36	1.9	36	83	11	90	31	1	4	62	1.23
42221407--42221450	23	1.9	23	100	0	88	27	11	13	47	1.77
42222279--42222314	17	2.1	17	100	0	72	33	5	11	50	1.61
42226561--42226835	141	2.0	141	83	7	353	34	29	6	28	1.82
42232289--42232370	35	2.4	34	77	2	92	51	1	0	47	1.08
42235216--42235255	19	2.1	19	100	0	80	42	10	15	32	1.79
42235216--42235268	19	2.8	19	88	5	63	45	11	13	30	1.78
42237332--42237361	5	5.8	5	96	4	51	0	16	0	83	0.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42238348--42238400	24	2.2	24	100	0	106	24	15	16	43	1.87
42242219--42242404	92	2.0	92	97	0	354	33	6	18	40	1.77
42245232--42245289	8	6.9	8	78	9	53	1	13	5	79	0.98
42256772--42257161	114	3.4	111	78	6	388	23	22	27	26	1.99
42261869--42261983	43	2.7	42	76	14	112	28	16	23	31	1.96
42262196--42262239	22	2.0	22	81	0	52	50	27	13	9	1.72
42262377--42262423	23	2.0	23	100	0	94	17	12	19	51	1.77
42264891--42264933	22	2.0	22	85	0	59	55	13	13	16	1.69
42269170--42269216	23	2.1	23	84	4	60	21	12	21	44	1.85
42281729--42281753	11	2.3	11	100	0	50	40	0	0	60	0.97
42284291--42284334	21	2.0	21	86	4	61	27	18	11	43	1.84
42288629--42288670	21	2.0	21	85	4	57	61	4	0	33	1.17
42288634--42288693	16	3.4	16	78	17	57	61	3	0	35	1.12
42288810--42288847	12	3.0	13	80	7	51	52	0	0	47	1.00
42290712--42290786	19	3.8	19	86	6	105	38	9	16	36	1.80
42290713--42290775	21	3.1	21	93	4	103	39	9	12	38	1.76
42290917--42291004	44	2.0	45	95	2	160	54	6	18	20	1.66
42291287--42291326	3	14.3	3	80	15	50	30	0	0	70	0.88
42291271--42291326	15	3.6	15	77	13	60	28	0	1	69	0.98
42291271--42291327	18	3.4	18	81	16	68	29	0	1	68	1.00
42291585--42291700	51	2.3	52	80	7	132	31	6	6	56	1.48
42292983--42293020	20	1.9	20	94	0	67	26	26	15	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42293840--42293903	32	2.0	32	100	0	128	34	15	25	25	1.95
42296955--42297521	88	6.5	88	93	0	859	29	26	22	21	1.99
42297965--42298080	44	2.7	44	83	4	137	29	18	23	28	1.98
42297965--42298216	128	2.0	129	81	2	301	30	19	20	28	1.97
42298500--42298595	21	4.8	19	91	5	138	37	9	14	38	1.79
42298501--42298584	21	4.1	21	93	3	145	38	9	13	39	1.77
42298500--42298602	40	2.7	38	83	14	138	37	8	15	37	1.79
42298513--42298618	21	5.0	22	82	13	73	37	7	15	39	1.75
42298584--42298628	23	2.0	23	86	4	65	33	4	15	46	1.66
42298593--42298857	132	2.0	132	100	0	530	27	14	20	37	1.91
42299174--42299213	3	14.3	3	80	15	50	30	0	0	70	0.88
42299158--42299213	15	3.6	15	77	13	60	28	0	1	69	0.98
42299158--42299214	18	3.4	18	81	16	68	29	0	1	68	1.00
42300815--42300883	20	3.2	20	77	18	84	43	14	5	36	1.70
42300795--42300883	45	2.0	45	97	0	169	43	16	5	33	1.72
42300795--42300868	25	3.2	25	75	18	95	44	17	6	31	1.75
42301233--42301341	41	2.7	41	88	0	146	29	23	20	26	1.99
42311600--42311665	31	2.1	31	100	0	132	19	36	3	40	1.67
42323243--42323451	92	2.3	91	84	5	251	44	4	3	46	1.41
42323506--42323715	66	3.4	63	69	21	190	41	3	5	49	1.43
42323467--42323759	120	2.4	120	92	4	459	42	2	4	49	1.38
42323592--42323643	15	3.6	15	80	12	56	44	0	1	53	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42323721--42323762	15	2.7	16	82	14	52	45	0	2	52	1.13
42323712--42323753	15	2.9	15	82	10	52	47	0	0	52	1.00
42323696--42324004	157	2.0	156	96	0	573	48	4	2	44	1.38
42323865--42323899	18	2.0	17	88	5	52	45	0	0	54	0.99
42324134--42324169	16	2.2	16	100	0	72	38	36	0	25	1.56
42331134--42331193	28	2.1	28	90	6	95	36	18	25	20	1.94
42332964--42333030	9	7.4	9	93	0	89	41	23	8	25	1.83
42333225--42333308	38	2.2	39	95	2	152	19	3	27	50	1.64
42336166--42336225	30	2.0	30	100	0	120	33	10	13	43	1.77
42337054--42337086	17	1.9	17	100	0	66	42	18	0	39	1.50
42338365--42338394	3	9.7	3	92	7	51	0	33	0	66	0.92
42339388--42339421	10	3.3	10	84	8	50	8	11	11	67	1.42
42343669--42343759	29	3.3	29	69	17	93	28	37	3	30	1.73
42343659--42343766	54	2.0	54	98	0	207	31	36	3	28	1.75
42343660--42343744	25	3.2	25	69	18	82	30	37	2	29	1.70
42348647--42348689	19	2.3	18	92	4	68	51	16	4	27	1.64
42348775--42348827	17	3.0	18	83	10	65	54	5	0	39	1.24
42348835--42348878	19	2.2	20	84	11	56	70	2	2	25	1.10
42355077--42355261	50	3.7	50	99	0	361	16	32	23	26	1.96
42358574--42358645	4	17.8	4	88	2	90	23	5	26	44	1.75
42359674--42359728	16	3.5	16	77	5	67	45	1	0	52	1.11
42361828--42361867	20	2.1	18	86	13	53	32	0	2	65	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42365939--42365992	19	2.7	20	80	5	56	53	1	5	38	1.35
42368603--42368636	15	2.3	15	90	10	52	38	26	0	35	1.57
42373094--42373141	19	2.5	19	80	6	53	29	4	0	66	1.10
42373869--42373921	20	2.7	21	77	16	60	13	7	16	62	1.53
42380830--42380860	2	15.5	2	100	0	62	48	0	0	51	1.00
42393460--42393572	32	3.5	32	79	8	113	41	7	14	36	1.75
42396971--42397087	43	2.7	43	80	6	139	12	19	19	47	1.81
42405691--42405731	11	3.7	11	80	0	55	21	14	7	56	1.63
42405768--42405826	30	2.0	30	96	0	109	25	5	15	54	1.61
42415071--42415196	42	3.0	42	91	1	198	25	18	22	34	1.96
42415498--42415568	21	3.4	21	80	0	79	2	45	18	33	1.64
42419762--42419815	22	2.5	22	82	14	67	40	1	3	53	1.29
42420612--42420688	39	2.0	40	85	12	106	38	37	2	20	1.67
42420962--42421012	15	3.3	15	86	2	66	39	45	0	15	1.47
42420962--42421012	8	6.6	8	82	8	70	39	45	0	15	1.47
42420962--42421012	23	2.2	24	83	16	72	39	45	0	15	1.47
42421357--42421642	113	2.5	113	79	7	283	25	23	24	26	2.00
42421586--42421780	71	2.7	71	77	10	184	24	23	23	29	1.99
42424290--42424367	39	2.0	39	94	0	138	41	17	12	28	1.87
42427273--42427300	6	4.7	6	100	0	56	85	0	0	14	0.59
42427233--42427528	145	2.0	148	87	9	433	50	11	10	27	1.72
42428144--42428180	16	2.3	16	86	13	58	40	0	0	59	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42428166--42428200	18	1.9	18	88	0	52	60	0	0	40	0.97
42435449--42435484	15	2.5	14	95	4	63	38	0	5	55	1.23
42436438--42436494	29	2.0	29	86	6	80	24	15	29	29	1.96
42436604--42436662	3	19.7	3	96	0	109	66	32	0	1	1.02
42436722--42436814	45	2.1	45	89	0	141	30	18	19	32	1.95
42439629--42439669	20	2.0	20	85	0	55	51	19	0	29	1.47
42439902--42439937	19	1.9	18	88	5	54	38	5	5	50	1.49
42453104--42453143	21	1.9	21	84	0	53	45	0	0	55	0.99
42453120--42453224	27	3.9	27	69	9	79	46	0	1	50	1.18
42453215--42453273	16	3.6	16	71	24	52	54	0	5	40	1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144