genome.fa.s11.2.7.7.80.10.50.1000.39.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  39  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11790007--11790182	71	2.5	73	82	7	204	33	22	14	30	1.93
11801988--11802138	27	5.6	27	95	1	230	26	13	29	30	1.94
11805770--11805889	42	2.8	43	86	5	163	27	30	17	25	1.97
11807143--11807179	15	2.5	15	95	0	65	54	18	10	16	1.71
11811225--11811263	8	5.1	8	81	12	55	33	0	2	64	1.08
11811218--11811263	15	3.1	15	83	0	65	36	0	2	60	1.09
11811213--11811269	7	8.0	7	84	9	53	40	0	1	57	1.09
11811228--11811270	7	6.0	7	89	5	59	32	0	2	65	1.06
11811717--11811763	21	2.2	21	92	0	76	44	29	4	21	1.71
11811950--11811991	21	2.0	21	85	0	57	45	33	2	19	1.63
11812036--11812087	21	2.5	21	80	0	59	50	28	1	19	1.58
11812179--11812216	18	2.1	19	95	5	69	47	15	0	36	1.46
11812238--11812277	14	2.9	14	80	0	53	45	37	2	15	1.59
11812210--11812302	21	4.4	21	70	8	64	43	35	2	19	1.63
11812219--11812299	28	2.9	28	77	0	81	44	34	2	18	1.63
11812279--11812326	25	1.9	25	87	8	71	37	41	0	20	1.53
11812307--11812341	15	2.4	15	90	4	54	45	34	0	20	1.51
11812302--11812346	22	2.0	22	82	0	54	44	33	0	22	1.53
11813391--11813430	21	1.9	21	89	0	62	32	5	0	62	1.17
11818577--11818642	19	3.2	21	87	6	64	36	19	9	34	1.84
11818594--11818672	19	4.2	19	90	9	126	35	16	10	37	1.82
11818616--11818672	17	3.5	15	88	11	53	35	15	10	38	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11818594--11818672	36	2.1	39	90	9	128	35	16	10	37	1.82
11830667--11830725	26	2.3	25	79	2	64	27	5	5	62	1.37
11833923--11834107	79	2.3	81	82	7	218	25	22	26	25	2.00
11833924--11834107	40	4.6	40	80	9	198	25	22	26	25	2.00
11833983--11834130	79	1.9	79	83	8	194	27	20	25	27	1.99
11837697--11837739	6	7.0	6	78	5	50	13	4	2	79	1.00
11839305--11839356	22	2.4	22	84	9	72	71	1	13	13	1.24
11844309--11844426	40	3.0	40	92	3	186	28	19	25	26	1.99
11844274--11844454	40	4.6	39	83	8	183	25	20	27	25	1.99
11844274--11844487	40	5.4	39	80	9	170	27	20	26	25	1.99
11851933--11852118	40	4.7	40	88	5	252	24	22	27	26	2.00
11851986--11852151	80	2.1	79	86	5	228	25	20	27	26	1.99
11857377--11857413	3	12.3	3	100	0	74	32	0	0	67	0.91
11869241--11869315	10	7.6	10	76	11	66	61	1	2	34	1.18
11869242--11869337	19	4.9	19	70	13	70	61	2	4	32	1.27
11869244--11869336	40	2.3	40	76	10	100	62	2	4	31	1.26
11869324--11869377	19	2.8	20	80	11	67	64	1	5	27	1.26
11869527--11869564	9	3.8	10	82	10	51	26	2	0	71	1.00
11869599--11869683	10	8.6	10	77	10	77	34	1	0	64	1.01
11869599--11869683	19	4.3	19	74	12	64	34	1	0	64	1.01
11869608--11869683	29	2.6	30	79	8	84	34	1	0	64	1.02
11870322--11870376	10	5.8	10	74	8	53	63	0	0	36	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11875240--11875290	22	2.3	22	96	0	93	47	5	0	47	1.26
11875330--11875518	38	5.0	38	67	14	138	33	11	26	27	1.91
11875330--11875552	114	2.0	114	92	1	376	33	11	26	28	1.91
11879411--11879496	44	2.0	44	97	0	163	12	19	15	52	1.74
11879423--11879493	21	3.3	21	66	21	56	14	21	11	53	1.71
11883456--11883548	43	2.2	43	92	3	152	27	6	13	51	1.66
11888191--11888283	43	2.2	43	92	3	152	27	6	13	51	1.66
11889349--11889403	27	2.0	27	100	0	110	50	3	23	21	1.64
11895767--11895795	3	9.7	3	100	0	58	31	0	0	68	0.89
11897024--11897093	24	3.2	24	61	23	62	15	14	21	48	1.80
11897039--11897109	18	3.6	18	67	20	52	18	19	21	40	1.91
11897026--11897108	42	2.0	42	100	0	166	18	16	21	43	1.88
11917229--11917266	17	2.2	18	90	4	60	10	47	28	13	1.76
11917369--11917398	12	2.5	12	88	0	51	26	46	16	10	1.78
11919600--11919736	73	1.9	73	98	0	265	30	7	15	46	1.73
11924777--11924821	22	2.0	22	86	0	63	20	28	22	28	1.98
11932262--11932323	24	2.7	23	79	18	74	40	4	1	53	1.32
11934822--11934862	18	2.3	19	79	12	50	53	0	4	41	1.22
11937478--11937656	87	2.1	87	100	0	358	35	10	11	43	1.74
11938111--11938147	5	7.2	5	93	6	65	59	0	0	40	0.97
11938112--11938144	16	2.1	16	100	0	66	54	0	0	45	0.99
11939739--11939852	59	1.9	59	90	0	183	35	4	7	52	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11941966--11942036	35	2.0	35	94	0	124	32	11	19	36	1.87
11956183--11956253	31	2.3	29	77	15	70	42	2	4	50	1.36
11960289--11960345	28	2.0	28	96	0	105	28	12	17	42	1.85
11964933--11964958	4	6.5	4	100	0	52	0	0	23	76	0.78
11964999--11965045	23	2.0	23	84	8	60	40	6	17	36	1.75
11969165--11969227	22	2.9	22	87	0	99	12	11	50	25	1.73
11970363--11970933	73	7.6	73	85	6	662	31	19	17	31	1.95
11970222--11971668	233	6.4	231	74	16	851	33	20	16	29	1.95
11970173--11971192	306	3.3	297	78	12	888	34	19	17	28	1.95
11970245--11971173	233	4.0	227	81	10	873	33	20	17	28	1.95
11970562--11970920	72	4.9	73	89	4	517	32	19	17	31	1.95
11970854--11971097	88	2.8	89	84	6	300	35	19	17	28	1.94
11971321--11971681	72	4.8	73	84	7	363	34	19	14	31	1.92
11971321--11971663	77	4.5	75	86	5	442	32	20	15	32	1.93
11971321--11971681	149	2.4	148	82	7	424	34	19	14	31	1.92
11971681--11971856	71	2.5	70	85	1	219	33	23	14	28	1.94
11972120--11972178	29	2.0	29	100	0	118	10	35	13	40	1.78
11978394--11978488	44	2.1	45	90	1	156	15	30	24	29	1.96
11983525--11984697	587	2.0	587	97	0	2220	39	12	19	29	1.88
11985962--11986024	22	2.9	22	87	0	99	12	11	50	25	1.73
11990007--11990057	24	2.2	24	85	3	68	50	9	3	35	1.54
11994414--11994465	24	2.2	24	89	0	77	50	9	3	36	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11997676--11997705	3	10.0	3	92	0	51	63	0	3	33	1.11
11999347--11999410	30	2.1	30	91	0	101	39	17	14	29	1.88
12000944--12001080	2	68.5	2	100	0	274	0	50	0	49	1.00
12002586--12002663	40	2.0	40	84	0	102	20	25	29	24	1.99
12002703--12002743	22	1.9	21	85	5	55	14	0	31	53	1.41
12002731--12002823	22	4.1	21	80	14	78	23	1	25	49	1.57
12002764--12002876	22	4.8	22	78	17	120	24	0	26	48	1.51
12002791--12002853	30	2.1	30	100	0	126	22	0	26	50	1.49
12002743--12002874	52	2.6	51	89	8	200	23	0	27	48	1.56
12002821--12002876	21	2.6	21	97	2	103	25	0	26	48	1.52
12002891--12002992	49	2.0	52	83	11	131	48	1	22	27	1.62
12002956--12003018	22	2.8	22	81	15	76	44	1	30	23	1.63
12010511--12010543	2	16.5	2	100	0	66	0	51	0	48	1.00
12011963--12012004	18	2.3	18	80	15	50	38	19	7	35	1.79
12020235--12020316	26	3.1	26	94	3	137	31	7	8	52	1.59
12020235--12020330	27	3.6	27	83	13	119	35	7	9	47	1.63
12025297--12025452	21	7.5	21	79	1	116	48	16	16	18	1.82
12025297--12025452	42	3.7	42	80	0	161	48	16	16	18	1.82
12025333--12025452	62	1.9	62	86	1	168	45	15	19	19	1.85
12041961--12041997	18	2.0	18	89	5	56	62	5	2	29	1.31
12050612--12050716	21	5.0	21	70	0	75	40	19	24	15	1.90
12050596--12050747	42	3.6	42	81	0	162	38	18	26	17	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12052682--12052723	18	2.3	19	88	12	61	69	4	0	26	1.08
12053368--12053404	19	1.9	19	94	0	65	18	0	16	64	1.29
12054398--12054438	21	1.9	21	85	5	55	39	12	4	43	1.63
12067505--12067538	18	1.9	18	88	5	52	70	5	11	11	1.32
12068204--12068228	7	3.6	7	100	0	50	12	12	0	76	1.04
12072549--12072594	24	1.9	24	81	0	56	34	2	2	60	1.21
12077495--12077519	7	3.6	7	100	0	50	84	0	0	16	0.63
12077641--12077666	4	6.5	4	100	0	52	76	0	0	23	0.78
12080390--12080494	42	2.5	43	74	14	110	28	23	33	14	1.94
12083785--12083920	59	2.3	59	98	0	263	25	14	25	34	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144