genome.fa.s11.2.7.7.80.10.50.1000.21.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  21  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6276435--6276819	131	2.9	131	95	0	673	29	21	20	28	1.98
6276448--6276740	43	6.7	44	65	7	114	29	21	21	27	1.98
6276801--6276913	42	2.7	42	85	6	142	30	25	20	23	1.98
6277381--6277446	21	3.0	21	82	8	62	10	1	30	57	1.42
6277372--6277444	23	3.2	23	77	13	71	9	1	28	60	1.37
6277775--6277860	3	29.3	3	73	19	60	29	3	1	66	1.16
6277775--6277864	18	4.7	18	77	13	83	30	3	1	65	1.16
6278313--6278365	25	2.2	23	83	12	63	26	11	3	58	1.49
6290905--6290960	24	2.4	22	80	13	67	37	3	1	57	1.27
6290895--6290960	23	2.8	23	80	10	71	37	3	1	57	1.23
6290950--6290994	22	2.2	20	84	11	56	53	11	0	35	1.37
6293310--6293382	19	3.8	19	88	0	119	39	8	15	36	1.77
6294537--6294576	19	2.0	20	85	4	55	32	5	10	52	1.56
6298307--6298359	23	2.3	23	90	0	88	32	28	20	18	1.97
6298553--6298591	18	2.2	17	86	13	53	46	20	0	33	1.51
6305581--6305605	9	2.8	9	100	0	50	24	0	8	68	1.16
6305595--6305643	23	2.1	23	88	7	73	44	0	6	48	1.27
6306100--6306130	15	2.0	16	93	6	55	64	9	19	6	1.45
6306104--6306165	26	2.3	27	86	5	81	70	4	22	1	1.14
6306870--6306923	18	3.1	17	81	7	72	44	0	20	35	1.52
6309602--6309650	23	2.1	23	88	7	73	48	6	0	44	1.27
6309640--6309664	9	2.8	9	100	0	50	68	8	0	24	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6325652--6325681	14	2.1	14	93	0	51	60	3	36	0	1.14
6328226--6328278	24	2.3	23	84	12	72	28	3	5	62	1.35
6329858--6329950	18	5.2	18	93	0	159	26	24	17	31	1.97
6329858--6329950	36	2.6	36	98	0	177	26	24	17	31	1.97
6339853--6340157	152	2.0	152	99	0	601	36	19	24	20	1.95
6341860--6341906	24	2.0	23	84	12	60	29	14	4	51	1.62
6344454--6344540	39	2.2	40	89	4	131	37	2	5	54	1.37
6347351--6347432	35	2.3	36	76	19	91	62	2	6	29	1.32
6353467--6353498	11	2.9	11	90	0	55	31	3	46	18	1.65
6354612--6354877	133	2.0	133	99	0	523	19	25	34	20	1.96
6358149--6358191	11	4.0	11	84	3	61	30	2	46	20	1.63
6358149--6358191	21	2.0	21	90	4	68	30	2	46	20	1.63
6362238--6362294	18	3.2	18	92	0	96	31	17	24	26	1.97
6362828--6362870	11	4.0	11	84	3	61	30	2	46	20	1.63
6362828--6362870	21	2.0	21	90	4	68	30	2	46	20	1.63
6378792--6378937	37	4.0	37	93	1	242	24	21	16	36	1.94
6378901--6379169	46	5.6	46	84	10	340	28	22	14	34	1.93
6378944--6379163	52	4.3	52	85	8	299	27	22	14	35	1.93
6378901--6379169	98	2.7	98	93	0	457	28	22	14	34	1.93
6388132--6388325	84	2.3	84	97	0	361	35	13	19	31	1.91
6388313--6388339	14	1.9	14	100	0	54	48	0	22	29	1.51
6390392--6390427	16	2.2	16	100	0	72	25	0	36	38	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6390643--6390684	15	2.7	16	82	14	52	52	2	0	45	1.13
6390652--6390693	15	2.9	15	82	10	52	52	0	0	47	1.00
6390859--6390919	28	2.2	28	85	5	81	50	3	0	45	1.17
6400185--6400246	29	2.1	29	100	0	124	40	16	16	27	1.89
6410396--6410445	21	2.4	21	80	3	66	30	6	0	64	1.18
6420898--6421297	132	3.0	132	90	2	626	27	24	19	28	1.98
6421293--6421563	44	6.0	45	72	8	136	25	22	19	31	1.98
6421332--6421562	92	2.5	92	89	2	356	24	23	20	31	1.98
6422864--6422907	7	6.3	7	80	19	56	15	18	0	65	1.27
6422873--6422919	21	2.2	21	77	7	51	14	19	0	65	1.26
6431106--6431143	15	2.5	15	91	0	58	31	10	0	57	1.32
6436968--6437012	22	2.1	21	91	4	72	11	17	28	42	1.84
6437077--6437276	86	2.3	86	81	3	233	25	30	18	26	1.98
6437059--6437276	43	5.1	43	79	1	204	25	29	19	25	1.99
6441129--6441363	122	1.9	123	93	2	411	31	14	12	42	1.83
6441262--6441579	114	3.0	100	83	12	429	28	12	14	43	1.82
6441363--6441666	114	2.7	116	90	3	485	29	13	15	41	1.85
6441140--6441579	215	2.0	217	88	5	654	29	13	13	43	1.82
6442131--6442162	17	1.9	17	93	6	57	18	3	6	71	1.20
6442526--6442577	21	2.4	21	80	3	59	38	38	1	21	1.64
6442738--6442793	21	2.7	20	78	10	58	35	37	0	26	1.57
6442815--6442847	14	2.3	15	94	5	59	36	33	0	30	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6443257--6443380	41	3.0	41	80	5	142	29	25	21	23	1.99
6447658--6447710	22	2.5	22	81	3	63	54	16	15	13	1.71
6459660--6459908	50	4.8	50	85	4	284	20	29	24	26	1.99
6459659--6459908	100	2.4	104	88	6	357	20	29	24	26	1.99
6460003--6460034	13	2.5	13	94	0	55	56	12	0	31	1.37
6460246--6460303	30	1.9	30	89	0	89	31	24	3	41	1.71
6464171--6464211	14	2.6	16	77	18	50	63	2	7	26	1.33
6464175--6464211	15	2.4	16	82	17	51	62	2	8	27	1.37
6465731--6465790	30	2.0	31	83	9	79	36	3	5	55	1.38
6471294--6471352	31	1.9	31	90	10	95	32	5	5	57	1.42
6474004--6474065	23	2.6	23	85	12	72	59	12	0	27	1.34
6474675--6474733	11	5.4	11	72	0	55	11	8	13	66	1.45
6475163--6475212	24	2.1	24	92	0	82	46	18	6	30	1.73
6475493--6475551	31	1.9	31	89	6	93	45	13	0	40	1.43
6476042--6476071	12	2.5	12	94	0	51	13	40	6	40	1.71
6479088--6479113	10	2.6	10	100	0	52	38	0	11	50	1.39
6479317--6479356	19	2.1	19	90	0	62	45	5	0	50	1.23
6481263--6481315	8	6.6	8	80	6	54	79	0	0	20	0.74
6481263--6481314	7	6.7	7	76	20	50	78	0	0	21	0.74
6481257--6481306	25	2.0	25	96	0	91	70	0	0	30	0.88
6486176--6486261	41	2.1	41	97	0	163	27	12	12	46	1.79
6495943--6495999	21	2.7	21	75	2	60	56	3	0	40	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6500086--6500139	27	2.0	27	82	10	65	33	5	12	48	1.65
6505573--6505605	2	16.5	2	93	0	57	54	45	0	0	0.99
6505936--6505963	5	5.6	5	100	0	56	42	0	39	17	1.50
6507377--6507711	167	2.0	167	100	0	670	35	9	17	37	1.83
6510439--6510512	18	4.2	18	80	13	100	64	1	6	27	1.26
6511337--6511386	20	2.3	20	80	10	55	62	2	0	36	1.07
6511364--6511474	54	2.1	53	83	5	134	39	9	14	36	1.79
6511692--6511783	27	3.2	27	67	16	76	52	15	1	31	1.50
6511693--6511816	60	2.1	60	93	0	212	53	12	0	33	1.44
6511985--6512029	24	1.9	23	82	13	56	2	33	0	64	1.06
6512858--6512920	30	2.1	30	88	8	94	39	4	0	55	1.21
6512867--6512925	30	1.9	31	93	3	102	35	6	0	57	1.25
6516452--6516481	6	4.8	6	95	4	51	33	0	0	66	0.92
6534669--6534702	12	2.8	12	90	0	50	67	2	0	29	1.05
6543885--6543933	19	2.6	19	81	18	59	67	4	0	28	1.09
6547407--6547605	99	2.0	99	97	0	371	39	18	15	26	1.90
6554754--6554889	51	2.7	51	77	0	155	39	6	12	41	1.69
6573041--6573080	20	2.0	20	90	0	62	27	10	12	50	1.72
6573026--6573092	34	1.9	35	90	3	109	31	8	13	46	1.74
6573020--6573096	14	5.0	15	71	20	52	33	9	14	42	1.77
6574663--6574705	22	2.0	22	95	0	77	9	16	27	46	1.77
6574777--6575023	42	5.8	42	79	5	214	29	31	16	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6575289--6575379	43	2.1	43	87	2	130	43	9	10	35	1.73
6579783--6579833	21	2.5	20	78	9	57	33	39	0	27	1.57
6580055--6580087	14	2.3	15	94	5	59	36	33	0	30	1.58
6580136--6580172	14	2.6	14	86	0	56	43	29	2	24	1.68
6580537--6580738	41	5.0	41	92	0	325	27	29	23	19	1.98
6580830--6580907	40	2.0	40	84	0	102	21	19	21	37	1.95
6581039--6581063	3	8.3	3	100	0	50	68	32	0	0	0.90
6581355--6581516	72	2.2	72	80	4	175	32	20	16	30	1.95
6589223--6589287	20	3.3	20	75	12	80	46	16	16	20	1.85
6589234--6589296	18	3.3	18	75	12	72	44	19	17	19	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144