genome.fa.s11.2.7.7.80.10.50.1000.116.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  116  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35949156--35949201	17	2.9	16	78	15	51	47	17	0	34	1.48
35951297--35951347	25	2.0	25	100	0	102	33	23	19	23	1.97
35955616--35955642	13	2.1	13	100	0	54	48	37	0	14	1.45
35958426--35958469	21	2.1	21	83	8	54	25	9	2	63	1.35
35960694--35960737	22	2.0	22	100	0	88	18	22	4	54	1.61
35964862--35964923	32	1.9	32	96	0	115	29	9	22	38	1.86
35969071--35969235	82	2.0	82	85	2	224	35	21	9	33	1.85
35970505--35970542	17	2.2	17	95	0	67	36	44	0	18	1.50
35974010--35974063	5	10.8	5	78	13	58	77	1	18	1	0.95
35974010--35974063	25	2.2	25	86	6	74	77	1	18	1	0.95
35980650--35980728	37	2.1	37	90	0	122	25	31	18	24	1.98
35980847--35981257	47	8.7	47	97	0	750	29	30	8	32	1.86
35982396--35982437	18	2.3	18	100	0	84	42	19	4	33	1.72
35985174--35985401	40	5.7	40	91	0	366	25	27	22	25	2.00
35992341--35992374	15	2.3	15	90	10	52	23	29	5	41	1.78
35993183--35993222	19	2.1	19	85	0	53	47	12	5	35	1.63
35998412--35998455	23	1.9	23	81	9	54	40	0	13	45	1.44
35998699--35998794	25	3.8	25	88	5	122	20	23	22	32	1.98
36005666--36005712	20	2.3	20	86	13	62	61	4	14	19	1.49
36006161--36006189	15	1.9	15	100	0	58	27	0	20	51	1.47
36007672--36007705	14	2.4	14	90	0	50	26	20	0	52	1.46
36011560--36011663	41	2.5	41	85	3	138	33	18	26	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36011576--36011643	21	3.2	22	67	12	61	36	17	23	22	1.94
36014248--36014279	15	2.3	15	89	10	50	18	28	28	25	1.98
36020311--36020418	53	2.0	53	100	0	216	20	26	9	43	1.82
36044496--36044790	50	5.9	50	78	3	256	30	20	27	22	1.98
36044496--36044741	100	2.5	102	82	6	297	30	20	27	21	1.98
36062774--36062814	10	3.9	10	84	12	55	53	0	0	46	1.00
36066851--36067073	41	5.4	41	80	2	205	31	18	23	25	1.98
36067054--36067166	43	2.7	43	72	12	108	22	19	25	32	1.97
36070532--36070901	104	3.6	104	90	1	564	30	30	20	18	1.97
36071230--36071293	30	2.2	29	81	10	76	29	28	6	35	1.82
36071237--36071293	30	1.9	30	85	3	80	29	24	7	38	1.82
36079699--36079762	30	2.2	29	81	10	76	29	28	6	35	1.82
36079706--36079762	30	1.9	30	85	3	80	29	24	7	38	1.82
36085733--36085883	41	3.7	41	89	0	221	31	20	23	24	1.98
36086318--36086365	22	2.2	22	96	0	87	33	2	31	33	1.70
36088821--36088863	14	3.1	14	86	6	61	74	2	2	20	1.04
36091639--36091710	35	2.1	35	97	0	135	38	5	23	31	1.78
36092722--36092847	62	2.0	62	92	0	207	36	0	40	23	1.55
36095332--36095366	3	11.7	3	100	0	70	0	34	0	65	0.93
36099223--36099295	21	3.3	21	70	10	74	41	20	0	38	1.53
36099219--36099308	45	2.0	45	100	0	180	42	22	0	35	1.54
36100034--36100074	20	2.0	20	85	4	55	48	17	2	31	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36106682--36106757	23	3.3	23	85	7	118	21	19	27	31	1.97
36111768--36111806	18	2.2	17	86	13	53	33	0	20	46	1.51
36111925--36111961	8	4.6	8	100	0	74	24	13	27	35	1.93
36112048--36112146	23	4.3	23	85	0	135	21	21	28	29	1.98
36112051--36112139	46	1.9	46	95	0	160	20	20	29	30	1.97
36127759--36127971	27	7.9	27	75	3	162	34	14	20	30	1.93
36130354--36130502	40	3.7	39	80	3	172	34	19	25	20	1.96
36131439--36131480	16	2.6	16	92	0	66	11	28	4	54	1.57
36133133--36133274	53	2.7	51	80	8	167	38	11	23	25	1.89
36133303--36133403	27	3.7	27	76	10	89	41	10	22	24	1.86
36135193--36135247	8	7.0	8	73	10	51	50	3	1	43	1.30
36139979--36140004	11	2.4	11	100	0	52	80	0	0	19	0.71
36139992--36140023	17	1.9	17	93	6	57	62	3	3	31	1.26
36149263--36149328	29	2.3	29	81	5	80	43	3	3	50	1.33
36156828--36156890	27	2.3	27	77	0	72	15	17	38	28	1.91
36157904--36157966	27	2.3	27	77	0	72	15	17	38	28	1.91
36159557--36159608	22	2.4	22	83	0	68	46	21	15	17	1.84
36159630--36159770	32	4.4	32	81	3	151	38	21	19	20	1.94
36159630--36159773	64	2.2	64	81	4	175	38	22	19	20	1.94
36159942--36160050	24	4.5	24	82	0	110	44	22	8	23	1.80
36160089--36160375	27	10.6	27	74	5	222	21	17	19	40	1.91
36160150--36160375	54	4.2	54	84	4	249	20	19	19	39	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36160069--36160357	81	3.6	81	82	3	332	21	18	20	39	1.93
36163566--36163650	43	2.0	44	92	2	145	36	10	21	31	1.87
36163572--36163640	22	3.2	22	64	24	56	42	10	17	30	1.82
36168333--36169431	556	2.0	556	83	2	1400	30	17	19	32	1.95
36174412--36174642	76	3.0	76	92	2	392	26	16	14	42	1.86
36177521--36177559	19	2.1	18	86	13	53	46	0	30	23	1.53
36189453--36189590	43	3.2	42	79	4	150	33	25	14	26	1.94
36189705--36189787	31	2.7	30	78	10	96	43	19	8	28	1.80
36189958--36190285	164	2.0	164	100	0	656	34	25	6	33	1.82
36213266--36213302	11	3.4	11	92	0	56	29	43	5	21	1.75
36215313--36215654	170	2.0	170	98	0	666	43	11	14	30	1.81
36220946--36221119	50	3.5	50	87	0	197	21	29	21	27	1.99
36220982--36221118	50	2.7	50	93	0	211	20	32	21	25	1.98
36224686--36224752	27	2.5	27	82	0	71	37	16	26	19	1.93
36226237--36226421	79	2.3	82	83	7	229	24	27	22	24	2.00
36226218--36226421	40	5.1	40	81	8	229	24	27	22	25	2.00
36231522--36231548	14	1.9	14	100	0	54	44	0	7	48	1.31
36231855--36231899	19	2.3	20	92	3	74	22	35	0	42	1.54
36233502--36233544	22	2.0	22	85	0	59	55	9	13	20	1.66
36233509--36233557	22	2.2	22	82	7	55	57	6	18	18	1.61
36248384--36248445	27	2.3	27	82	0	88	33	14	25	25	1.94
36249491--36249540	26	1.9	26	91	0	82	42	10	18	30	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36257473--36257510	20	1.9	19	89	5	58	23	7	7	60	1.51
36265318--36265366	3	16.3	3	100	0	98	67	0	0	32	0.91
36265989--36266048	10	6.0	9	75	22	50	31	3	3	61	1.28
36265989--36266054	20	3.4	18	76	15	60	34	3	3	59	1.28
36266574--36266621	24	2.0	25	87	4	71	54	8	0	37	1.31
36270192--36270255	30	2.1	30	97	0	119	46	9	12	31	1.73
36271312--36271347	6	5.8	6	90	3	54	55	0	27	16	1.42
36285528--36285572	22	2.0	22	100	0	90	31	13	13	42	1.82
36287759--36287990	50	4.6	50	87	3	304	28	15	26	29	1.96
36287759--36287990	101	2.3	100	85	4	252	28	15	26	29	1.96
36288830--36289278	225	2.0	224	98	0	871	38	6	18	35	1.77
36294158--36294256	47	2.1	47	83	3	119	26	15	27	31	1.95
36297200--36297641	51	8.7	51	79	6	423	30	14	25	29	1.95
36297206--36297641	102	4.3	102	90	1	617	30	14	25	29	1.95
36299753--36299792	14	2.6	16	84	15	66	22	7	25	45	1.78
36301756--36301918	29	5.6	29	74	10	154	23	26	9	41	1.84
36301777--36301941	86	1.9	86	88	0	249	23	26	10	40	1.86
36301756--36301916	57	2.8	58	73	11	159	22	26	9	40	1.84
36301904--36301981	29	2.7	29	87	2	120	25	25	10	38	1.87
36301756--36301970	115	1.9	116	82	4	274	23	26	10	40	1.86
36308196--36308251	20	2.8	20	80	2	67	44	10	1	42	1.49
36319817--36319841	4	6.2	4	100	0	50	52	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36333600--36333636	13	2.8	13	87	4	56	27	5	0	67	1.12
36338208--36338266	26	2.3	26	84	0	82	32	22	25	20	1.98
36341936--36341998	29	2.2	28	77	8	65	63	4	6	25	1.38
36343481--36344024	44	12.7	44	69	13	285	27	22	20	30	1.98
36343475--36343728	129	2.0	128	86	5	352	27	20	20	30	1.98
36343520--36344073	170	3.2	170	88	3	745	26	22	20	29	1.99
36343609--36344073	44	10.8	43	70	11	238	26	23	20	29	1.99
36349196--36349820	315	2.0	312	96	0	1151	26	17	21	34	1.95
36353610--36353634	3	8.3	3	100	0	50	64	0	0	36	0.94
36357250--36357647	111	3.5	112	88	3	532	43	10	16	30	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144