genome.fa.s11.2.7.7.80.10.50.1000.50.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  50  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15636123--15636166	19	2.3	19	100	0	88	36	20	0	43	1.52
15638004--15638226	104	2.1	104	100	0	446	36	17	15	30	1.92
15638541--15638649	26	4.1	26	76	17	91	59	4	2	33	1.32
15638561--15638617	30	1.9	30	89	7	89	57	3	3	35	1.33
15638781--15638824	17	2.6	17	85	3	63	47	0	11	40	1.39
15638948--15638983	3	12.0	3	100	0	72	66	0	0	33	0.92
15639326--15639373	21	2.4	20	93	6	80	37	14	10	37	1.81
15639360--15639385	12	2.2	12	100	0	52	42	15	7	34	1.75
15640173--15640338	44	3.8	44	80	7	171	28	25	17	28	1.98
15640349--15640655	88	3.5	88	93	0	497	19	24	28	27	1.98
15640349--15640669	44	7.3	45	63	9	151	19	25	27	28	1.98
15640635--15641188	44	12.6	44	76	6	460	29	26	15	28	1.96
15640649--15641188	132	4.1	132	93	1	823	29	27	14	28	1.95
15640635--15641174	265	2.0	265	89	1	823	30	26	15	27	1.96
15645106--15645204	32	3.2	32	80	8	80	57	6	3	33	1.38
15645343--15645386	17	2.6	17	85	3	63	47	0	11	40	1.39
15645512--15645547	3	12.0	3	93	0	63	63	0	2	33	1.08
15645571--15645600	7	4.4	7	91	8	53	73	0	0	26	0.84
15645859--15645916	22	2.6	22	81	7	64	41	17	5	36	1.72
15645908--15645933	12	2.2	12	100	0	52	42	15	7	34	1.75
15646301--15646325	10	2.5	10	100	0	50	32	0	8	60	1.26
15646399--15646442	18	2.4	19	81	11	56	29	4	0	65	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15649795--15649820	3	8.7	3	100	0	52	65	0	0	34	0.93
15654328--15654662	167	2.0	167	97	0	625	36	9	27	26	1.88
15666249--15666344	42	2.3	42	94	0	165	38	22	9	29	1.86
15672490--15672720	92	2.5	93	79	7	265	43	28	10	17	1.82
15674518--15674548	16	1.9	16	100	0	62	25	22	32	19	1.97
15674890--15674979	33	2.7	33	87	0	135	14	11	35	38	1.82
15676437--15676484	20	2.3	21	85	3	71	41	22	6	29	1.78
15688558--15688595	15	2.5	16	87	8	53	57	0	2	39	1.12
15688727--15688775	6	7.8	6	79	6	53	40	16	24	18	1.90
15688756--15688904	45	3.3	44	84	1	190	40	20	18	20	1.91
15692493--15692652	45	3.8	39	73	18	115	19	18	21	40	1.92
15692510--15692661	45	3.4	45	85	0	205	19	19	21	40	1.91
15692639--15692693	6	8.8	6	82	6	56	18	25	16	40	1.91
15692643--15692688	18	2.5	18	85	3	65	17	23	17	41	1.90
15705668--15705701	6	5.7	6	100	0	68	17	35	0	47	1.48
15723497--15723609	61	1.9	59	85	10	158	44	6	4	45	1.49
15729499--15729690	50	3.8	50	88	2	287	20	31	22	25	1.98
15731182--15731217	19	1.9	19	94	5	65	38	11	16	33	1.84
15733727--15733939	106	2.0	106	89	3	331	32	21	15	30	1.94
15734354--15734433	25	3.2	25	61	22	58	18	27	22	31	1.97
15734318--15734561	50	4.8	50	90	0	317	20	29	22	26	1.99
15736233--15736303	35	2.0	35	91	0	115	23	9	19	46	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15741426--15741472	21	2.2	22	92	3	78	21	19	38	21	1.94
15742551--15742593	21	2.0	21	100	0	86	30	4	27	37	1.77
15751942--15751989	24	2.0	24	100	0	96	45	16	16	20	1.85
15752946--15752989	19	2.4	18	82	14	54	11	6	2	79	1.01
15754426--15754743	107	3.0	107	90	0	510	30	20	18	30	1.96
15756533--15756573	21	1.9	22	90	5	66	70	0	0	29	0.87
15759669--15759873	88	2.3	91	88	5	292	45	3	3	47	1.38
15759878--15760426	54	9.2	56	65	21	221	42	2	5	49	1.39
15759889--15760424	120	4.5	120	93	1	923	42	2	5	49	1.39
15760014--15760065	15	3.6	15	80	12	56	44	0	1	53	1.11
15760130--15760164	18	2.0	17	88	5	52	45	0	0	54	0.99
15760254--15760305	15	3.6	15	80	12	56	44	0	1	53	1.11
15760374--15760415	15	2.9	15	82	10	52	47	0	0	52	1.00
15760514--15760616	45	2.5	39	72	23	102	33	27	1	36	1.68
15760531--15760621	45	2.0	44	87	6	130	37	26	2	34	1.69
15760602--15760637	16	2.2	16	95	0	63	36	36	0	27	1.57
15765932--15765990	29	2.0	30	83	3	75	54	13	5	27	1.60
15766353--15766435	41	2.0	41	100	0	166	27	16	21	33	1.95
15766833--15766862	13	2.3	13	100	0	60	30	0	10	60	1.30
15775484--15775545	27	2.3	27	77	0	70	20	30	29	19	1.97
15775598--15775719	10	12.2	10	70	19	51	67	0	31	0	1.02
15775599--15775737	24	5.8	24	68	16	76	69	0	28	0	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15775614--15775737	34	3.6	34	71	15	110	69	0	29	0	1.00
15775648--15775734	44	2.0	43	84	10	115	71	1	26	1	1.00
15775680--15775761	26	3.3	26	72	11	75	70	0	29	0	0.87
15776090--15777465	159	8.7	158	72	12	1034	50	8	10	30	1.67
15776090--15777496	319	4.4	317	92	2	2302	49	8	10	30	1.67
15782518--15782617	42	2.4	41	80	8	105	51	12	5	32	1.60
15782898--15782965	27	2.5	27	85	0	82	17	29	33	19	1.95
15784576--15784600	10	2.5	10	100	0	50	32	0	0	68	0.90
15785170--15785315	73	2.0	73	95	0	265	32	6	8	52	1.56
15785185--15785331	73	2.0	73	86	2	206	35	6	8	48	1.61
15785948--15785992	20	2.2	20	88	0	63	57	2	2	37	1.23
15787114--15787174	27	2.2	28	82	11	81	50	0	3	45	1.17
15787126--15787182	27	2.1	27	87	6	80	52	1	1	43	1.21
15799332--15799398	35	1.9	35	87	3	100	32	10	13	43	1.78
15803985--15804360	158	2.5	150	80	11	410	25	9	16	48	1.77
15805841--15805901	7	8.7	7	87	0	50	49	8	0	42	1.32
15805819--15805886	28	2.4	28	80	4	75	47	16	1	35	1.56
15805841--15805900	21	2.9	21	75	9	59	50	8	0	41	1.33
15805876--15805902	7	3.9	7	100	0	54	44	0	0	55	0.99
15807979--15808088	32	3.5	31	68	5	78	36	18	26	19	1.94
15808049--15808100	16	3.3	15	78	10	59	38	23	23	15	1.92
15808130--15808217	28	3.2	28	74	9	72	39	21	25	13	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15808395--15808567	73	2.3	72	85	2	211	39	19	25	16	1.91
15808478--15808590	45	2.5	45	85	0	163	40	19	25	14	1.89
15808478--15808607	45	2.9	45	80	4	154	41	20	24	13	1.88
15808412--15808635	118	1.9	118	86	0	322	41	20	24	13	1.88
15814493--15814548	28	2.0	28	92	0	94	35	25	28	10	1.89
15817925--15817986	23	2.6	23	75	14	56	61	3	1	33	1.22
15818017--15818068	20	2.7	19	82	5	59	38	3	13	44	1.62
15818220--15818271	20	2.6	19	75	6	50	38	1	13	46	1.54
15824335--15824362	14	2.0	14	100	0	56	42	14	7	35	1.73
15829769--15829809	19	2.1	20	86	4	57	48	2	2	46	1.28
15841414--15841565	75	2.0	75	93	0	259	19	19	22	38	1.93
15844838--15845236	207	1.9	206	92	4	669	26	21	19	33	1.97
15845468--15845528	27	2.4	24	75	15	68	1	32	4	60	1.28
15850052--15850079	14	2.0	14	100	0	56	42	35	7	14	1.73
15868474--15868504	15	2.1	15	93	0	53	32	25	3	38	1.72
15879604--15879689	43	2.0	43	100	0	172	39	20	6	32	1.80
15895181--15895236	27	2.1	27	100	0	112	26	0	28	44	1.54
15900959--15901003	19	2.3	19	84	3	54	53	11	0	35	1.37
15904076--15904154	36	2.2	36	93	0	131	7	24	13	54	1.65
15904119--15904144	13	2.0	13	100	0	52	0	30	7	61	1.24
15907066--15907278	67	3.2	66	63	19	150	46	3	3	46	1.37
15907008--15907287	137	2.0	138	90	0	445	46	5	3	44	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15907170--15907204	18	2.0	17	88	5	52	45	0	0	54	0.99
15906909--15907473	156	3.8	145	81	12	605	47	5	3	43	1.44
15907326--15907374	15	2.9	18	80	20	61	44	0	0	55	0.99
15907326--15907380	15	3.4	16	80	16	53	43	0	1	54	1.10
15907596--15907632	17	2.2	17	95	4	67	37	37	0	24	1.56
15907759--15907819	29	2.1	29	84	0	77	47	8	14	29	1.73
15914607--15914718	56	2.0	56	100	0	224	25	7	23	44	1.78
15918017--15918761	333	2.2	329	96	3	1355	32	23	5	38	1.77
15920683--15920958	46	6.0	46	91	3	416	29	25	8	36	1.86
15920683--15920958	137	2.0	138	91	2	448	29	25	8	36	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144