genome.fa.s11.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  117  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36357592--36357802	78	2.7	78	94	2	352	45	10	15	28	1.80
36361297--36361330	16	2.1	16	100	0	68	47	5	5	41	1.52
36362368--36362408	21	1.9	21	85	5	55	58	2	0	39	1.11
36362783--36362843	25	2.4	26	88	2	88	32	3	0	63	1.10
36379746--36379893	75	2.0	75	89	0	224	22	23	25	27	2.00
36385437--36385472	16	2.2	16	90	0	54	44	16	11	27	1.82
36403166--36403207	12	3.5	12	90	0	57	30	42	16	9	1.80
36404585--36404642	26	2.2	26	90	0	89	32	12	12	43	1.79
36409353--36409381	14	2.0	15	93	6	51	37	27	0	34	1.57
36409737--36409858	36	3.2	36	69	18	102	33	14	17	34	1.90
36413563--36413630	26	2.6	26	86	4	93	23	22	20	33	1.97
36414061--36414102	21	2.0	21	86	9	59	38	0	21	40	1.53
36418237--36418299	27	2.4	27	84	7	85	20	3	19	57	1.54
36422595--36422643	22	2.2	23	82	10	57	57	10	2	30	1.43
36423405--36423450	23	2.0	23	87	8	67	45	0	2	52	1.13
36423403--36423456	27	1.9	28	88	7	83	48	0	1	50	1.11
36423502--36423559	29	2.0	29	83	6	73	51	17	6	24	1.69
36425060--36425097	20	2.0	18	90	10	58	52	0	2	44	1.14
36431150--36431211	32	1.9	32	93	0	106	29	9	14	46	1.76
36434995--36435123	68	1.9	69	83	1	170	46	6	20	26	1.74
36439999--36440054	22	2.6	21	72	11	51	57	5	7	30	1.48
36440716--36440808	33	2.8	32	81	3	114	22	29	9	38	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36442509--36442539	15	2.1	15	100	0	62	29	51	0	19	1.47
36443324--36443359	13	2.9	13	92	8	58	8	19	0	72	1.10
36444233--36444286	25	2.2	24	77	9	56	74	1	11	12	1.16
36456149--36456210	31	2.0	31	100	0	124	32	9	16	41	1.80
36461979--36462042	24	2.7	23	79	11	67	45	0	0	54	0.99
36471520--36471706	51	3.7	51	80	4	209	24	16	27	31	1.96
36471630--36471710	26	3.2	26	62	28	64	22	13	29	34	1.92
36471717--36471804	45	2.0	44	90	2	140	26	17	25	31	1.97
36481830--36481947	45	2.6	45	80	4	141	44	9	17	27	1.80
36492549--36492901	89	3.9	91	81	8	341	34	20	9	34	1.86
36492549--36492869	90	3.6	90	80	7	334	35	21	8	34	1.84
36493034--36493102	10	7.7	9	71	18	54	66	1	1	30	1.09
36493328--36493380	19	2.7	20	83	16	67	24	7	1	66	1.28
36493358--36493466	19	5.7	18	68	11	65	33	4	0	60	1.23
36493416--36493483	27	2.6	27	80	2	84	30	0	2	66	1.07
36493396--36493554	18	8.3	19	66	18	80	33	1	1	63	1.13
36493406--36493554	9	15.8	9	70	18	72	33	1	2	63	1.14
36503021--36503088	21	3.2	20	74	15	66	27	22	10	39	1.86
36508099--36508187	25	3.6	25	80	7	101	26	22	29	21	1.99
36508205--36508268	26	2.4	27	84	10	87	37	20	26	15	1.92
36517424--36517476	18	3.1	17	84	10	63	67	1	0	30	1.01
36517437--36517493	18	3.4	17	79	16	57	66	3	1	28	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36525631--36525667	18	2.0	19	89	5	58	40	0	0	59	0.97
36530817--36530906	43	2.1	43	97	0	171	32	16	16	34	1.92
36531906--36531964	21	2.8	20	80	14	57	54	3	1	40	1.27
36531946--36532055	11	10.4	11	70	20	83	60	0	1	38	1.08
36531999--36532065	31	2.2	31	97	2	127	61	0	0	38	0.96
36531924--36532056	52	2.6	52	79	11	164	59	0	1	39	1.07
36535713--36535755	21	2.0	21	95	0	77	16	34	20	27	1.94
36538567--36538730	40	4.1	39	80	8	163	32	23	16	28	1.96
36541794--36541893	37	2.8	36	82	8	107	28	15	16	41	1.88
36544273--36544394	43	2.8	44	79	11	128	22	17	27	31	1.96
36550517--36551000	50	9.6	50	84	5	573	27	20	28	22	1.99
36551951--36551998	25	1.9	25	95	0	87	20	22	18	37	1.94
36557222--36557291	29	2.3	32	80	12	92	37	4	8	50	1.53
36559700--36559733	10	3.3	10	92	8	59	47	2	17	32	1.63
36564249--36564718	94	4.9	94	81	7	475	37	6	21	34	1.80
36570761--36570803	17	2.5	17	100	0	86	9	27	48	13	1.73
36586628--36586666	21	1.9	20	89	5	60	74	0	15	10	1.07
36593423--36593760	108	3.1	109	90	1	529	33	18	17	31	1.94
36594033--36594068	14	2.6	15	87	12	51	55	0	2	41	1.14
36595922--36596206	44	6.6	43	72	12	201	25	22	21	30	1.99
36595974--36596238	129	2.0	131	84	4	349	24	20	22	32	1.98
36602212--36602240	14	2.0	15	93	6	51	27	0	20	51	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36611277--36611715	109	4.1	109	92	0	731	33	16	17	32	1.93
36611988--36612023	14	2.6	15	87	12	51	55	0	2	41	1.14
36612284--36612315	7	4.6	7	100	0	64	62	0	0	37	0.95
36617180--36617248	25	2.8	25	81	0	93	27	24	21	26	1.99
36618938--36618963	9	2.9	9	100	0	52	65	0	0	34	0.93
36624262--36624321	18	3.3	18	70	21	54	15	36	3	45	1.62
36624271--36624333	18	3.5	18	74	8	65	14	33	6	46	1.70
36624271--36624344	36	2.1	36	81	0	85	17	32	5	44	1.71
36625630--36625702	22	3.5	21	67	25	57	34	4	19	42	1.70
36625584--36625725	39	3.6	39	88	1	196	33	4	19	42	1.71
36628271--36628314	21	2.1	21	82	0	52	6	0	43	50	1.29
36628357--36628660	97	3.2	96	82	7	348	37	2	19	40	1.65
36628693--36628987	126	2.3	126	87	0	430	35	18	19	26	1.95
36632162--36632229	34	2.0	34	88	2	100	44	10	4	41	1.58
36632338--36632378	21	2.0	21	85	0	55	2	19	46	31	1.63
36633288--36633312	7	3.6	7	100	0	50	56	16	0	28	1.41
36633308--36633333	7	3.7	7	100	0	52	57	15	0	26	1.38
36633288--36633333	14	3.3	14	88	11	60	56	15	0	28	1.39
36635851--36635918	34	2.0	34	88	2	100	44	10	4	41	1.58
36636027--36636067	21	2.0	21	85	0	55	2	19	46	31	1.63
36636423--36636491	29	2.3	30	85	7	88	10	10	44	34	1.72
36638134--36638173	21	2.0	21	95	5	73	45	5	5	45	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36639516--36639552	17	2.2	17	100	0	74	27	35	0	37	1.57
36643293--36643345	3	17.7	3	100	0	106	66	0	0	33	0.92
36643641--36643681	21	2.0	21	85	9	57	36	7	4	51	1.51
36645453--36645537	25	3.5	25	87	3	111	41	2	0	56	1.12
36645506--36645542	11	3.4	11	88	0	56	45	0	0	54	1.00
36664209--36664900	132	5.2	132	94	1	1197	28	19	26	25	1.99
36665059--36665175	44	2.6	43	81	11	121	25	21	25	27	1.99
36665102--36665264	44	3.8	43	72	10	129	26	19	22	31	1.98
36682633--36682663	14	2.2	14	94	0	53	19	0	22	58	1.40
36684500--36684559	26	2.3	26	91	0	93	41	15	15	28	1.86
36689758--36689791	17	2.0	17	100	0	68	41	23	0	35	1.55
36689761--36689801	17	2.4	17	88	8	57	39	24	0	36	1.56
36692487--36692557	3	23.7	3	100	0	142	0	33	0	66	0.92
36698551--36698587	19	1.9	19	100	0	74	64	0	0	35	0.94
36699786--36699826	2	20.5	2	89	0	64	51	4	0	43	1.23
36707646--36707688	18	2.4	18	96	0	77	51	0	2	46	1.13
36708070--36708094	4	6.2	4	100	0	50	24	0	0	76	0.80
36709472--36709581	25	4.4	25	85	0	139	36	20	16	27	1.93
36711808--36712043	116	2.0	118	87	1	341	35	14	22	27	1.93
36711881--36712166	155	1.8	158	84	5	402	34	15	22	27	1.94
36712187--36712226	14	2.9	14	88	0	53	27	0	20	52	1.46
36712481--36712697	7	31.1	7	77	4	134	18	0	33	47	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36712481--36712624	62	2.3	62	83	4	175	17	0	34	47	1.48
36713150--36713197	20	2.4	20	78	0	51	52	2	0	45	1.12
36717225--36717412	43	4.4	42	74	6	146	28	17	22	31	1.96
36721360--36721406	7	6.7	7	100	0	94	42	27	14	14	1.86
36734002--36734035	10	3.3	10	84	8	50	67	5	0	26	1.13
36734238--36734265	13	2.2	13	100	0	56	50	7	0	42	1.30
36739687--36739834	42	3.5	42	83	8	165	30	26	18	25	1.98
36742117--36742171	12	4.8	12	75	22	55	45	0	1	52	1.11
36742125--36742167	22	1.9	23	90	4	70	44	0	2	53	1.13
36742112--36742173	23	2.8	22	78	7	72	46	0	1	51	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144