genome.fa.s11.2.7.7.80.10.50.1000.132.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  132  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40998215--40998272	28	2.1	28	96	0	107	36	18	13	31	1.90
41008948--41008997	26	1.9	26	84	8	66	50	14	4	32	1.61
41011626--41011681	6	9.2	6	83	16	71	50	1	1	46	1.22
41012633--41012680	21	2.3	20	76	13	53	62	6	0	31	1.20
41015070--41015101	12	2.6	13	85	14	50	40	0	6	53	1.26
41023308--41023353	19	2.6	18	82	10	58	73	2	0	23	0.94
41023297--41023386	17	5.4	16	69	21	51	66	4	0	28	1.11
41023637--41023665	12	2.3	13	94	5	51	48	6	0	44	1.29
41025022--41025065	22	1.9	24	86	9	65	43	11	2	43	1.53
41026289--41026331	20	2.2	20	82	0	50	32	6	9	51	1.61
41029336--41029724	206	1.9	206	94	1	681	34	18	10	36	1.85
41032769--41032860	37	2.4	36	82	12	105	39	3	4	53	1.37
41032855--41032971	62	1.9	62	86	5	168	41	5	5	48	1.47
41034524--41034904	95	4.0	95	99	0	753	35	9	6	48	1.61
41036518--41036597	30	2.6	31	75	16	78	35	2	1	61	1.18
41036611--41036656	25	1.9	25	91	8	78	26	4	0	69	1.07
41036616--41036683	16	4.2	16	78	14	61	25	1	0	73	0.92
41036743--41036783	22	1.9	22	90	5	66	41	0	2	56	1.13
41036857--41036891	18	1.9	18	88	0	52	54	0	0	45	0.99
41039581--41039690	55	2.0	55	94	0	193	32	28	16	22	1.96
41041226--41041256	12	2.6	12	89	0	53	80	0	0	19	0.71
41046338--41046367	3	10.0	3	100	0	60	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41048316--41048345	16	1.9	15	93	6	51	26	10	16	46	1.78
41048717--41048792	35	2.2	35	82	0	89	43	14	15	26	1.85
41055683--41055858	56	3.1	56	99	0	343	44	9	23	22	1.81
41057026--41057169	40	3.6	40	79	12	145	25	23	27	24	2.00
41057078--41057176	39	2.5	39	86	4	110	25	22	28	24	1.99
41057025--41057175	79	1.9	80	81	6	182	25	23	27	23	2.00
41060586--41061128	31	17.7	31	87	1	722	43	17	8	30	1.79
41060586--41061128	61	8.9	62	87	1	722	43	17	8	30	1.79
41060586--41061128	92	5.9	92	89	1	784	43	17	8	30	1.79
41067807--41068253	31	14.5	31	85	1	551	44	15	8	31	1.77
41067807--41068253	92	4.8	92	88	0	615	44	15	8	31	1.77
41067808--41068264	123	3.7	123	83	2	551	44	15	8	30	1.76
41076964--41077007	23	1.9	23	85	0	61	2	22	0	75	0.92
41081985--41082063	25	3.2	23	77	10	68	29	16	27	26	1.97
41083688--41083770	39	2.1	40	88	2	123	51	9	6	32	1.59
41084964--41085341	125	3.0	124	90	1	551	31	15	20	32	1.94
41088347--41088590	116	2.1	116	92	1	400	45	6	9	39	1.62
41088584--41089150	23	25.2	23	74	15	308	25	0	25	48	1.51
41088584--41089154	45	12.7	43	80	11	316	25	0	25	48	1.52
41088585--41089150	113	5.0	111	80	10	484	25	0	25	48	1.51
41089193--41089240	25	1.9	25	100	0	96	39	14	0	45	1.45
41089671--41089708	18	2.1	18	90	0	58	36	7	31	23	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41090542--41090579	20	1.9	20	84	10	51	55	7	2	34	1.43
41091550--41091580	11	2.8	11	90	0	53	51	6	22	19	1.69
41094412--41094587	88	2.0	88	96	0	325	17	29	13	39	1.88
41097288--41097344	22	2.6	22	88	0	78	29	24	7	38	1.82
41099487--41099527	15	2.7	15	84	0	55	9	34	12	43	1.75
41100354--41100923	69	8.3	69	76	2	347	20	22	24	32	1.98
41100413--41100924	138	3.7	137	75	3	427	20	23	23	32	1.98
41100322--41100753	207	2.1	207	84	0	542	20	21	25	32	1.97
41100360--41100924	207	2.7	207	80	1	540	20	22	24	32	1.98
41102737--41102771	18	1.9	18	94	0	61	14	17	31	37	1.89
41106755--41106804	23	2.2	22	89	10	75	34	2	4	60	1.27
41106849--41106890	3	14.0	3	85	9	59	30	0	2	66	1.04
41119081--41119514	44	9.9	44	62	11	129	30	17	23	28	1.97
41119044--41120038	132	7.6	132	91	0	1490	30	18	23	26	1.98
41119488--41119672	44	4.2	44	64	15	112	31	21	22	24	1.98
41119992--41120083	47	2.0	47	100	0	184	28	15	27	29	1.96
41119862--41120217	179	2.0	179	93	0	613	31	18	23	26	1.97
41120043--41120291	132	1.9	128	88	3	372	33	19	21	25	1.97
41120285--41120398	44	2.6	44	86	4	160	29	21	21	27	1.98
41122195--41122224	15	2.1	15	93	6	53	20	6	3	70	1.25
41124093--41124184	30	3.1	29	75	12	87	67	0	1	31	0.98
41124189--41124270	29	2.9	27	75	13	85	62	2	4	30	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41124092--41124225	10	13.4	10	66	14	62	65	1	1	31	1.10
41124112--41124295	9	19.2	9	65	19	79	60	2	3	33	1.25
41135034--41135204	93	1.8	93	82	5	220	31	18	23	25	1.98
41137332--41137366	8	4.4	8	96	0	61	54	8	0	37	1.31
41150154--41150449	114	2.6	115	84	2	364	30	20	23	25	1.98
41150385--41150521	72	1.9	73	84	4	188	32	18	24	25	1.97
41151645--41151711	21	3.2	21	80	4	73	11	0	41	46	1.41
41151649--41151702	14	3.9	14	80	2	56	7	0	46	46	1.31
41151981--41152441	228	2.0	228	99	0	913	36	8	7	47	1.62
41155365--41155408	15	2.8	16	82	10	54	38	4	0	56	1.20
41155536--41155594	12	4.8	12	74	15	57	52	11	0	35	1.38
41155645--41156091	9	48.8	9	71	16	287	46	17	1	34	1.58
41155657--41155971	123	2.6	121	84	4	398	46	16	1	35	1.55
41159144--41159254	43	2.6	43	94	0	186	17	16	35	31	1.92
41159485--41159600	42	2.8	42	93	0	196	23	21	21	33	1.97
41160694--41160819	42	3.0	41	88	3	180	29	21	22	26	1.99
41161988--41162012	2	12.5	2	100	0	50	52	48	0	0	1.00
41166473--41166547	15	5.1	15	81	13	77	37	38	0	24	1.55
41166544--41166590	15	3.3	15	79	8	53	38	31	2	27	1.69
41166831--41166860	15	2.0	15	93	0	51	36	43	0	20	1.52
41167106--41167547	113	3.9	113	89	2	665	25	27	23	23	2.00
41167106--41167547	227	2.0	225	89	5	678	25	27	23	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41168424--41168470	20	2.3	21	85	14	71	65	2	0	31	1.04
41169174--41169262	44	2.0	44	93	0	151	20	20	22	37	1.95
41169871--41169902	14	2.2	15	94	5	57	25	6	18	50	1.70
41170229--41170367	45	3.2	44	74	12	142	32	17	14	35	1.90
41170128--41170394	92	3.0	88	80	7	245	32	19	14	33	1.92
41170240--41170433	88	2.2	89	87	0	273	29	17	15	36	1.91
41171901--41171930	7	4.1	7	91	8	51	56	0	16	26	1.40
41171877--41171923	19	2.5	19	86	10	62	53	0	23	23	1.47
41171901--41171930	15	2.1	14	93	6	51	56	0	16	26	1.40
41183744--41183799	25	2.2	25	96	0	103	55	14	23	7	1.63
41185152--41185181	14	2.2	14	94	5	53	30	0	0	70	0.88
41188342--41188383	18	2.3	19	84	15	54	14	9	0	76	1.02
41188355--41188392	19	2.0	20	85	15	53	13	10	2	73	1.19
41194719--41194928	40	5.3	39	89	4	242	25	21	27	25	1.99
41194666--41194928	120	2.2	120	82	4	309	25	21	27	25	1.99
41194667--41194963	80	3.7	80	81	6	230	26	21	27	24	1.99
41202608--41202950	40	8.6	40	91	2	485	24	20	27	27	1.99
41204716--41204803	44	2.0	44	84	4	115	38	9	19	32	1.83
41209258--41209365	35	3.2	33	70	18	98	30	3	0	64	1.17
41209280--41209335	27	2.1	26	83	12	69	30	1	0	67	1.01
41209222--41209429	33	6.5	32	70	14	106	26	4	1	67	1.20
41209230--41209413	22	8.4	22	66	18	73	26	4	1	67	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41209190--41209451	32	8.4	31	68	22	113	28	4	2	64	1.27
41209189--41209407	65	3.4	65	89	2	350	27	5	2	64	1.27
41209360--41209417	23	2.5	24	81	10	68	20	5	1	72	1.13
41209243--41209430	30	5.9	30	74	14	162	26	4	1	67	1.17
41209317--41209488	89	2.0	87	84	9	224	27	6	2	63	1.30
41211550--41212071	125	4.2	124	88	2	744	32	22	17	28	1.96
41212104--41212142	16	2.4	16	82	0	51	53	28	0	17	1.44
41212821--41212879	30	2.0	30	83	6	75	37	8	10	44	1.69
41213018--41213097	29	2.7	30	80	7	83	50	12	3	33	1.58
41213022--41213097	30	2.5	29	80	6	80	48	13	3	34	1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144