genome.fa.s11.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  110  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34025235--34025276	20	2.0	21	90	4	68	19	4	2	73	1.12
34033234--34033341	54	2.0	54	94	0	189	37	13	25	23	1.92
34036640--34036743	45	2.3	45	75	9	104	33	18	25	22	1.96
34038257--34038451	3	65.7	3	71	6	101	26	7	5	61	1.44
34038543--34038584	20	2.0	21	90	4	68	19	4	2	73	1.12
34040237--34040284	21	2.3	21	100	0	96	35	6	0	58	1.23
34041565--34041593	13	2.1	14	93	6	51	55	0	3	41	1.17
34042064--34042099	15	2.4	15	95	0	63	30	11	2	55	1.49
34045130--34045183	25	2.1	26	96	3	101	29	7	3	59	1.42
34049903--34049960	25	2.3	25	84	0	71	46	1	3	48	1.29
34058676--34058729	23	2.3	23	100	0	108	38	3	14	42	1.64
34058676--34058740	23	2.8	23	90	0	67	41	3	15	40	1.63
34071746--34071787	21	2.0	22	85	4	59	47	4	7	40	1.52
34080272--34080360	41	2.2	41	91	0	142	19	11	30	39	1.86
34081087--34081123	12	3.0	12	88	7	56	56	8	0	35	1.29
34083328--34083466	24	5.4	26	72	19	96	60	4	4	30	1.35
34083377--34083431	27	2.0	27	82	10	67	60	5	0	34	1.20
34083309--34083494	102	1.9	98	89	6	293	61	4	3	31	1.31
34083455--34083496	21	2.0	22	86	13	61	61	4	0	33	1.17
34085045--34085095	20	2.6	20	88	11	79	54	3	9	31	1.51
34088470--34088589	43	2.8	42	81	7	161	27	24	15	33	1.95
34090722--34090776	29	1.9	29	88	3	85	34	27	21	16	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34094532--34094594	20	3.4	19	77	12	60	34	3	1	60	1.22
34103872--34103972	50	2.0	50	96	0	184	27	17	16	37	1.92
34109873--34109941	13	5.2	13	80	3	84	33	21	0	44	1.53
34109873--34109941	27	2.6	26	86	4	102	33	21	0	44	1.53
34110338--34110394	30	1.9	30	85	0	78	24	26	28	21	1.99
34117570--34117613	13	3.4	12	81	12	52	31	18	2	47	1.61
34126420--34126464	20	2.2	20	88	0	63	35	13	2	48	1.54
34129886--34130100	50	4.3	50	81	4	236	28	12	20	39	1.88
34129886--34130100	100	2.2	100	85	2	288	28	12	20	39	1.88
34144808--34144875	18	3.8	18	75	14	77	41	4	16	38	1.68
34145581--34145768	94	2.0	94	97	0	358	37	3	23	35	1.71
34149332--34149434	37	2.8	37	96	0	188	24	32	20	23	1.98
34149575--34149720	48	3.0	48	94	0	247	31	28	6	34	1.82
34160573--34160598	13	2.0	13	100	0	52	23	30	23	23	1.99
34160866--34160901	18	2.0	18	100	0	72	5	33	38	22	1.77
34162807--34162863	18	3.2	18	92	2	89	14	22	42	21	1.88
34162917--34162970	27	2.0	27	85	7	74	35	16	16	31	1.92
34162956--34163325	27	13.7	27	74	7	207	39	19	10	31	1.84
34163179--34163298	55	2.2	54	82	8	145	43	19	8	29	1.80
34163797--34163844	22	2.2	22	85	7	62	12	14	22	50	1.77
34163648--34164140	246	2.0	246	100	0	986	18	18	25	37	1.94
34164043--34164090	22	2.2	22	85	7	62	12	14	22	50	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34169539--34169630	42	2.2	42	90	0	139	33	22	14	29	1.93
34169778--34169846	25	2.8	25	84	4	86	26	23	27	23	2.00
34170631--34170694	27	2.4	27	81	5	76	21	25	17	35	1.95
34170748--34170846	27	3.6	27	76	12	92	35	10	16	38	1.82
34170812--34170908	27	3.6	26	75	10	81	26	8	21	43	1.81
34170940--34171031	27	3.4	27	86	5	132	40	6	23	29	1.80
34170931--34171058	54	2.4	53	78	11	134	36	7	22	32	1.83
34172899--34173030	59	2.2	59	90	1	201	28	15	16	38	1.90
34173290--34173397	54	2.0	53	94	1	189	32	23	19	24	1.97
34174319--34174393	31	2.4	31	95	0	132	28	28	16	28	1.97
34174417--34174508	42	2.2	42	90	0	139	33	22	13	30	1.92
34174642--34174700	25	2.4	24	81	10	75	22	23	25	28	1.99
34175719--34175807	30	3.0	30	79	8	92	58	14	15	11	1.63
34175719--34175798	15	5.4	15	82	4	83	60	12	16	11	1.60
34175719--34175807	15	6.0	15	76	8	76	58	14	15	11	1.63
34178768--34178942	46	3.8	46	79	7	201	29	29	19	21	1.98
34178776--34178947	93	1.8	93	92	0	290	29	29	19	21	1.98
34180916--34180979	27	2.4	27	81	5	76	21	25	15	37	1.93
34181032--34181084	27	2.0	27	88	0	79	35	16	11	35	1.85
34181096--34181167	27	2.7	27	79	14	85	27	4	20	47	1.69
34181223--34181314	27	3.4	27	85	5	123	39	7	23	29	1.83
34181213--34181341	54	2.4	54	79	3	136	35	9	23	31	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34182520--34182544	12	2.1	12	100	0	50	16	24	20	40	1.91
34182522--34182628	45	2.4	45	88	0	151	23	18	17	40	1.91
34192213--34192324	43	2.6	43	95	0	206	29	32	26	11	1.92
34192317--34192518	38	5.3	38	89	2	305	29	27	22	20	1.98
34192317--34192518	78	2.6	76	87	3	305	29	27	22	20	1.98
34200323--34200699	181	2.1	181	84	6	494	33	11	8	46	1.71
34201997--34202113	62	1.9	61	86	5	166	50	5	2	41	1.38
34207915--34207993	29	2.8	29	80	1	88	30	30	13	25	1.94
34214454--34214488	18	1.9	18	100	0	70	11	28	42	17	1.83
34218490--34218583	23	4.1	23	84	0	125	22	24	4	48	1.68
34218493--34218583	46	2.0	46	91	0	146	23	24	4	48	1.69
34224069--34224162	23	4.1	23	85	0	134	22	25	4	47	1.69
34231280--34231326	22	2.1	21	81	14	51	68	0	6	25	1.13
34235115--34235161	23	2.0	23	100	0	94	8	29	12	48	1.71
34237773--34237917	73	2.0	73	98	0	281	41	11	6	40	1.68
34238191--34238392	111	1.8	111	81	6	257	34	11	16	38	1.84
34246528--34246593	17	3.5	17	67	25	51	40	13	9	36	1.76
34246530--34246612	41	2.0	41	100	0	166	38	16	9	34	1.82
34249310--34249361	24	2.2	24	89	0	77	55	9	1	32	1.43
34250141--34250204	30	2.1	30	97	0	119	35	31	12	20	1.90
34261751--34261776	13	2.0	13	100	0	52	53	15	0	30	1.42
34268093--34268118	13	2.0	13	100	0	52	53	15	0	30	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34272020--34272179	51	3.2	50	88	4	223	57	0	5	36	1.27
34272084--34272199	19	6.6	17	72	16	76	57	0	3	38	1.15
34272153--34272225	18	4.1	18	71	16	53	60	1	6	31	1.31
34272437--34272472	18	1.9	19	94	5	65	33	0	0	66	0.92
34272432--34272473	18	2.4	17	84	11	57	38	0	0	61	0.96
34272458--34272654	51	3.9	50	84	4	261	37	6	2	54	1.39
34272457--34272646	101	1.9	102	93	1	328	36	5	2	54	1.38
34278532--34278606	21	3.6	21	75	10	82	54	4	9	32	1.51
34278531--34278622	41	2.3	41	96	1	168	54	5	8	31	1.54
34278752--34278808	20	2.7	21	81	13	64	59	1	5	33	1.30
34278837--34278886	17	3.0	16	81	16	57	62	2	0	36	1.07
34282845--34282930	30	2.9	30	91	0	127	13	29	31	25	1.94
34285792--34286020	112	2.0	112	84	3	300	37	13	12	35	1.83
34288241--34288276	14	2.6	14	90	0	54	27	25	8	38	1.84
34290977--34291002	8	3.2	8	100	0	52	15	0	0	84	0.62
34290969--34291002	16	2.1	16	88	0	50	20	0	0	79	0.73
34295181--34295283	30	3.4	29	76	11	100	48	4	4	41	1.46
34295174--34295308	60	2.2	61	88	1	200	46	7	3	42	1.49
34295211--34295325	31	3.8	30	75	12	99	46	5	3	45	1.42
34299275--34299320	20	2.4	19	82	13	58	67	4	2	26	1.21
34301785--34301966	27	6.8	27	81	3	188	29	24	15	29	1.96
34308233--34308264	15	2.1	15	94	0	55	15	6	9	68	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34314916--34314949	17	1.9	18	88	5	52	35	5	0	58	1.22
34320601--34320657	20	3.0	20	65	19	50	49	7	7	36	1.57
34320688--34320745	30	1.9	30	89	6	91	41	0	0	58	0.98
34327888--34327928	16	2.5	17	80	11	50	60	4	0	34	1.18
34327948--34327984	15	2.7	13	84	15	56	67	0	0	32	0.91
34327952--34327984	8	4.2	8	88	7	50	66	0	0	33	0.92
34327946--34327984	20	2.0	20	89	0	60	66	0	0	33	0.92
34330099--34330151	23	2.3	22	81	15	63	22	0	16	60	1.36
34330348--34330394	21	2.3	20	79	13	51	29	4	2	63	1.25
34330958--34331049	44	2.2	41	86	5	121	56	4	4	34	1.39

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144