genome.fa.s11.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  2  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
231480--231556	1	77.0	1	72	0	55	1	3	9	85	0.77
231480--231555	7	10.7	7	78	13	66	1	3	9	85	0.78
231480--231556	14	5.3	13	80	14	73	1	3	9	85	0.77
231480--231556	28	2.7	27	82	9	82	1	3	9	85	0.77
240899--241034	67	2.0	67	98	0	263	29	18	18	33	1.95
243887--243944	10	5.3	11	76	19	59	0	22	0	77	0.77
243893--243930	13	3.1	13	85	11	53	0	26	0	73	0.83
244532--244664	30	4.4	29	79	7	115	41	3	21	33	1.69
244712--244754	7	5.9	7	84	10	59	76	0	0	23	0.78
244712--244755	4	11.8	4	77	22	51	77	0	0	22	0.77
244712--244756	23	2.0	23	95	0	81	77	0	0	22	0.76
247237--247291	21	2.8	19	76	15	58	32	5	1	60	1.30
247320--247384	19	3.3	19	80	4	58	29	0	9	61	1.27
247339--247384	20	2.3	20	88	7	67	21	0	10	67	1.21
249124--249166	9	4.8	9	94	0	68	39	27	9	23	1.85
255190--255237	20	2.4	19	83	10	60	31	6	2	60	1.33
255211--255284	35	2.1	36	82	7	89	41	1	5	51	1.33
255204--255308	39	2.8	36	77	12	97	40	0	4	54	1.28
261684--261735	20	2.6	19	79	8	59	21	1	5	71	1.17
261888--262291	105	3.8	106	85	4	505	28	15	18	37	1.91
261888--262298	109	3.9	103	83	7	441	28	15	18	37	1.91
262730--262842	50	2.2	51	88	1	174	18	20	18	42	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
262756--262862	50	2.1	50	81	3	117	19	14	18	46	1.84
262872--263435	110	5.2	106	75	12	398	31	17	19	31	1.95
262813--263435	218	2.9	219	76	10	606	31	16	19	32	1.94
264166--264267	52	1.9	53	92	5	172	59	1	4	33	1.30
265212--265984	215	3.6	217	83	5	957	32	19	16	31	1.94
267191--267242	24	2.2	24	89	0	77	55	9	1	32	1.43
269176--269225	26	1.9	26	83	0	64	56	2	4	38	1.30
272207--272276	29	2.3	31	82	4	81	44	8	8	38	1.66
274385--274428	21	2.0	22	91	4	72	22	22	15	38	1.92
277416--277441	13	2.0	13	100	0	52	30	0	7	61	1.24
282424--282505	30	2.8	28	82	10	92	36	2	0	60	1.10
282472--282515	19	2.2	20	80	4	54	40	0	2	56	1.11
285446--285582	73	1.9	73	83	7	179	29	16	22	32	1.95
285274--285626	188	1.9	189	80	4	426	31	16	22	30	1.95
285515--285905	115	3.4	114	72	9	337	30	18	22	28	1.97
286215--286271	7	8.0	7	74	3	51	15	0	40	43	1.47
286215--286271	21	2.7	21	83	2	69	15	0	40	43	1.47
286222--286261	15	2.7	15	88	3	64	20	0	35	45	1.51
287455--287545	44	2.1	44	93	0	155	25	32	7	34	1.84
289219--289275	9	6.7	9	82	9	66	42	14	1	42	1.55
289222--289273	16	3.1	16	86	8	68	40	15	1	42	1.58
289357--289420	23	3.0	22	72	21	64	48	20	0	31	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
290511--290577	21	3.2	21	87	8	100	31	19	46	2	1.65
290903--291094	42	4.6	42	84	1	224	34	20	19	25	1.96
290903--291088	84	2.2	84	86	1	257	35	19	18	25	1.95
292932--292982	19	2.5	19	84	9	66	39	3	1	54	1.30
294228--294291	30	2.1	31	94	2	112	39	6	28	26	1.80
294226--294276	15	3.3	16	72	10	61	43	5	25	25	1.77
297682--297721	18	2.3	18	87	12	57	55	2	10	32	1.47
301238--301288	25	2.0	25	96	0	93	50	7	19	21	1.72
301234--301313	30	2.9	27	85	12	110	46	7	23	22	1.77
301468--301514	2	23.5	2	91	0	67	0	51	0	48	1.00
301620--301666	2	23.5	2	91	0	67	0	51	0	48	1.00
301440--301743	152	2.0	153	98	0	583	18	27	13	40	1.88
312827--312884	29	2.0	30	82	3	73	63	0	10	25	1.26
316924--316959	15	2.5	15	90	4	56	63	16	0	19	1.30
324511--324616	49	2.2	48	94	3	187	47	12	13	27	1.78
325197--325221	3	8.3	3	100	0	50	68	0	0	32	0.90
325246--325293	6	7.7	6	84	9	60	77	4	2	16	1.03
325987--326011	13	1.9	13	100	0	50	76	0	16	8	1.02
326808--326907	44	2.3	43	76	8	103	31	18	19	32	1.95
326834--326924	44	2.1	44	85	0	119	32	16	19	30	1.94
327003--327328	44	7.4	43	64	9	156	25	25	22	26	2.00
326940--327374	88	5.0	88	90	1	615	24	24	23	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
328579--328629	7	7.0	7	79	18	52	13	15	0	70	1.17
328579--328621	22	1.9	23	90	4	70	13	13	0	72	1.13
328579--328631	23	2.3	22	83	6	61	13	15	0	71	1.14
328598--328624	13	2.1	13	100	0	54	14	14	0	70	1.17
329067--329126	23	2.5	24	81	10	70	10	3	8	78	1.07
334997--335023	13	2.1	13	100	0	54	77	0	14	7	0.97
335985--336034	20	2.5	21	80	9	59	42	2	0	56	1.11
338739--338794	29	1.9	29	85	7	78	41	7	12	39	1.70
342613--342717	7	15.0	7	85	0	111	28	30	0	40	1.57
345932--345956	8	3.1	8	100	0	50	76	0	0	24	0.80
349745--349929	25	7.5	25	70	15	82	36	21	23	18	1.95
351395--351663	109	2.5	109	91	3	416	31	17	18	32	1.94
353373--353415	20	2.1	21	91	4	70	6	9	25	58	1.54
353864--353891	3	9.3	3	100	0	56	32	0	0	67	0.91
354167--354294	64	2.0	64	100	0	256	43	14	6	35	1.70
355339--355364	5	5.2	5	100	0	52	61	0	0	38	0.96
355557--355592	3	12.0	3	100	0	72	66	0	0	33	0.92
373871--373920	25	2.1	24	85	7	66	68	2	2	28	1.12
378513--379006	253	2.0	253	98	0	961	29	23	11	35	1.90
380465--380512	20	2.5	20	86	3	62	41	0	4	54	1.20
380481--380528	9	5.0	9	78	12	51	29	0	6	64	1.18
380479--380518	20	2.0	20	100	0	80	35	0	5	60	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
382564--382683	42	2.9	41	83	7	143	37	20	17	24	1.94
382577--382683	41	2.6	42	82	7	128	35	20	17	26	1.95
383051--383102	21	2.5	21	90	0	77	5	42	17	34	1.73
388600--388823	9	25.4	9	75	11	205	31	1	19	47	1.57
388627--388743	61	1.9	61	82	6	148	31	1	19	47	1.60
388630--388817	104	1.8	104	91	2	315	32	1	20	46	1.58
388849--388948	20	5.2	20	76	13	120	41	4	7	48	1.49
388837--388984	56	2.6	56	92	1	251	40	4	8	46	1.54
389056--389155	20	5.2	20	75	13	111	40	4	7	49	1.49
389037--389194	56	2.8	57	91	1	264	38	4	8	48	1.55
388838--389309	207	2.3	207	98	0	910	41	4	9	43	1.59
389263--389306	20	2.2	20	100	0	88	38	4	4	52	1.42
392164--392667	231	2.2	232	93	0	866	32	20	18	29	1.96
393129--393210	7	11.9	7	79	5	60	40	48	1	9	1.44
393128--393211	20	4.1	20	71	4	60	39	47	1	11	1.48
393846--394182	113	3.0	113	84	3	417	29	22	23	24	1.99
396636--396692	29	2.0	29	86	6	80	40	10	8	40	1.71
397269--397537	17	15.0	18	69	16	159	29	11	9	49	1.70
397501--397539	21	1.9	20	94	5	69	35	10	10	43	1.73
401405--401453	20	2.5	19	78	18	55	28	6	2	63	1.30
401457--401523	18	3.6	19	76	11	68	38	0	5	55	1.25
401671--401709	14	2.6	15	84	8	53	41	10	10	38	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
404114--404171	29	2.0	29	86	6	82	37	10	12	39	1.77
416348--416686	44	7.8	43	73	10	194	30	21	21	25	1.98
416435--416767	174	1.9	170	84	6	447	31	20	21	26	1.98
417608--417642	15	2.4	14	85	4	52	11	11	0	77	1.00
418361--418394	12	2.8	12	86	13	52	32	0	0	67	0.91
418361--418392	11	2.6	13	80	19	50	31	0	0	68	0.90
418357--418396	14	2.9	14	82	14	55	32	0	0	67	0.91
418829--418875	19	2.5	19	80	13	53	14	4	6	74	1.17
429339--429382	21	2.0	22	91	4	72	22	22	15	38	1.92
433314--433341	11	2.5	11	100	0	56	82	0	17	0	0.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144