genome.fa.s11.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  7  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1615692--1616016	85	3.8	85	83	2	359	25	16	24	32	1.96
1619970--1620003	16	2.1	16	88	0	50	23	5	11	58	1.55
1621679--1621713	14	2.5	14	100	0	70	42	0	0	57	0.99
1622163--1622200	19	2.0	19	85	10	51	21	42	0	36	1.53
1628625--1629373	45	16.7	45	87	1	1056	30	15	22	31	1.95
1628625--1629373	90	8.4	90	94	1	1229	30	15	22	31	1.95
1656256--1656312	27	2.0	27	86	10	78	64	5	3	26	1.30
1659181--1659330	35	4.3	35	77	5	142	33	18	20	28	1.96
1661084--1661174	34	2.7	34	86	3	112	42	12	18	26	1.85
1670782--1670811	14	2.1	14	93	0	51	40	0	13	46	1.43
1677768--1677829	27	2.3	28	83	8	76	14	6	3	75	1.12
1682054--1682083	14	2.1	14	93	0	51	40	0	13	46	1.43
1684625--1684663	20	2.0	20	100	0	78	41	5	10	43	1.61
1698861--1698994	72	1.9	72	88	0	205	40	18	7	33	1.79
1702100--1702142	11	3.8	11	84	6	59	13	6	0	79	0.93
1702094--1702156	10	5.0	13	74	23	55	17	9	1	71	1.20
1702094--1702157	25	2.6	24	82	9	76	18	9	1	70	1.22
1702102--1702154	23	2.2	24	83	3	63	15	9	1	73	1.17
1702419--1702496	21	3.4	23	74	8	70	26	2	30	39	1.70
1702455--1702521	21	3.1	21	82	4	80	29	2	32	34	1.73
1708937--1709056	33	3.8	31	79	8	134	35	0	17	46	1.48
1708936--1709051	30	3.6	32	78	10	114	36	0	18	45	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1709110--1709377	125	2.1	126	85	3	362	34	16	19	29	1.94
1712545--1712616	21	3.4	21	78	0	63	16	37	23	22	1.94
1717022--1717075	23	2.5	22	82	8	65	72	9	7	11	1.29
1719549--1719619	37	1.9	37	97	0	133	36	0	22	40	1.54
1723014--1723040	14	1.9	14	100	0	54	40	0	14	44	1.46
1726525--1726568	19	2.3	19	84	7	54	43	6	2	47	1.42
1727313--1727345	9	3.7	9	91	0	57	36	0	3	60	1.12
1728623--1728687	30	2.2	30	86	5	87	23	9	6	61	1.48
1728801--1728896	13	7.4	13	73	9	88	20	8	19	51	1.73
1728801--1728891	41	2.4	37	83	7	110	20	8	19	50	1.74
1728845--1728949	45	2.3	45	90	0	156	24	4	20	49	1.68
1728887--1728916	15	1.9	16	93	6	53	23	0	26	50	1.50
1729001--1729185	69	2.7	69	84	0	255	26	3	14	56	1.53
1729063--1729164	24	4.4	24	71	16	97	29	3	11	54	1.54
1729220--1729244	13	1.9	13	100	0	50	32	4	16	48	1.64
1732135--1732173	20	2.0	20	94	0	69	35	15	17	30	1.91
1733902--1733940	15	2.6	15	83	0	51	2	35	0	61	1.10
1733922--1733962	21	1.9	21	90	5	64	9	24	0	65	1.22
1733976--1734033	18	3.2	18	90	0	89	10	18	3	67	1.35
1733932--1734012	30	2.7	28	74	12	81	12	25	1	60	1.39
1736712--1736758	20	2.3	20	85	0	67	36	17	21	25	1.94
1738170--1738267	20	4.8	20	81	7	108	12	29	20	37	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1738659--1738715	13	4.4	13	82	4	53	45	0	22	31	1.53
1739693--1739763	21	3.4	21	88	0	106	22	33	22	21	1.97
1740780--1740842	31	2.0	31	84	0	81	22	4	20	52	1.65
1740779--1740851	31	2.6	27	76	16	74	20	4	19	56	1.58
1740837--1740905	29	2.4	29	87	0	102	28	1	21	47	1.59
1760017--1760070	28	1.9	28	100	0	108	27	24	18	29	1.98
1762982--1763099	45	2.6	45	80	6	132	44	16	17	21	1.86
1765429--1765464	16	2.2	16	100	0	72	30	30	0	38	1.58
1770716--1770770	10	5.6	10	77	12	51	72	1	3	21	1.09
1772091--1772597	132	3.8	132	91	0	739	25	26	20	28	1.99
1772580--1772981	89	4.5	89	86	1	482	25	23	23	27	2.00
1772833--1772972	44	3.2	43	70	11	131	25	21	25	27	1.99
1772936--1773519	45	13.0	45	82	5	682	28	23	17	29	1.97
1775784--1775824	6	7.2	6	81	10	50	0	24	0	75	0.80
1775784--1775825	17	2.5	17	92	0	66	0	26	0	73	0.83
1776664--1776717	25	2.2	25	86	6	74	59	5	14	20	1.55
1778872--1778968	51	1.9	51	97	2	187	11	18	8	61	1.53
1779290--1779382	46	2.0	46	93	0	159	25	11	20	41	1.86
1782032--1782198	54	2.8	60	68	22	145	41	2	5	50	1.38
1782098--1782149	14	3.6	14	75	14	52	44	1	0	53	1.11
1782032--1782252	117	1.9	120	91	5	369	42	1	4	50	1.34
1782212--1782246	18	2.0	17	88	5	52	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1782387--1782501	44	2.6	44	86	4	151	33	31	5	30	1.80
1782481--1782533	16	3.3	16	91	0	88	20	35	5	37	1.77
1783239--1783275	19	1.9	19	88	0	56	54	5	2	37	1.38
1783428--1783466	15	2.6	15	91	0	60	64	2	7	25	1.33
1787731--1787789	3	19.3	3	96	3	109	0	33	0	66	0.92
1787641--1787756	54	2.1	54	85	4	151	7	29	3	59	1.42
1799123--1799224	41	2.5	40	87	6	141	29	25	18	26	1.98
1801068--1801173	29	3.7	28	76	6	95	23	22	18	34	1.96
1801065--1801266	58	3.5	57	78	2	217	25	19	18	37	1.94
1803968--1804013	21	2.2	21	84	7	58	19	39	17	23	1.92
1805123--1805214	40	2.3	40	81	3	96	40	26	17	16	1.90
1811622--1811685	18	3.5	17	73	14	56	40	6	18	34	1.76
1815822--1815866	22	2.0	22	83	8	56	46	2	2	48	1.26
1819943--1819990	24	2.0	24	87	0	69	47	4	22	25	1.69
1823120--1823144	13	1.9	13	100	0	50	20	0	0	80	0.72
1823106--1823148	17	2.4	18	81	14	54	23	4	0	72	1.04
1823783--1823819	19	1.9	19	89	10	58	27	0	16	56	1.40
1823783--1823818	18	1.9	19	88	5	56	27	0	16	55	1.42
1823953--1823977	9	2.8	9	100	0	50	40	0	0	60	0.97
1827081--1827118	19	2.0	19	94	0	67	55	10	18	15	1.68
1827727--1827770	18	2.5	17	82	10	52	40	2	6	50	1.42
1827732--1827780	19	2.6	18	87	9	62	36	2	8	53	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1832141--1832464	159	2.0	159	100	0	648	33	8	7	51	1.58
1832517--1832561	23	2.0	23	81	0	54	31	2	11	55	1.47
1834181--1834273	46	2.0	46	97	0	177	31	18	17	33	1.94
1834515--1834564	25	2.0	26	84	4	66	40	10	12	38	1.76
1836827--1836852	1	26.0	1	100	0	52	0	0	0	100	0.00
1837266--1837305	19	2.1	19	85	4	53	30	12	15	42	1.83
1837657--1837685	6	4.8	6	100	0	58	51	0	31	17	1.45
1843648--1843692	8	5.6	8	97	0	81	86	2	0	11	0.65
1843735--1843815	27	3.0	27	90	0	126	25	23	40	9	1.85
1843743--1843837	27	3.5	27	85	2	84	25	28	34	11	1.91
1844125--1844183	3	19.7	3	100	0	118	33	0	0	66	0.92
1844933--1844977	18	2.5	18	85	0	63	28	4	46	20	1.69
1847358--1847386	14	2.1	14	100	0	58	55	0	6	37	1.27
1848336--1848372	17	2.2	17	100	0	74	45	8	16	29	1.76
1849703--1849767	28	2.4	28	87	7	98	47	0	10	41	1.38
1849803--1849852	18	2.8	18	90	0	73	66	6	0	28	1.15
1850587--1850687	10	10.5	10	70	16	79	0	33	0	65	1.00
1850594--1850704	18	6.1	18	74	15	95	0	32	0	66	0.98
1850586--1850695	38	2.9	38	90	2	159	0	34	0	64	1.00
1850631--1850704	14	5.1	14	72	22	55	0	31	0	68	0.89
1850625--1850704	34	2.8	28	75	24	85	0	32	0	67	0.91
1850636--1850707	10	6.6	10	73	17	54	0	31	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1850665--1850707	22	1.9	23	85	4	61	0	30	0	69	0.88
1850627--1850708	28	2.7	30	75	19	89	0	32	0	67	0.91
1850606--1850721	42	2.9	40	78	10	96	0	35	0	63	1.00
1850860--1850933	28	2.6	28	87	8	105	48	1	9	40	1.44
1850862--1850933	29	2.5	29	93	2	119	50	1	9	38	1.44
1855875--1855929	28	1.9	29	88	3	85	45	16	3	34	1.65
1856460--1856537	28	2.8	28	79	12	90	52	29	1	16	1.52
1856557--1856599	15	2.9	15	89	3	61	53	32	6	6	1.55
1856554--1856605	14	3.6	14	84	5	68	53	30	7	7	1.57
1856583--1856718	70	1.9	70	83	2	175	52	25	6	15	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144