genome.fa.s11.2.7.7.80.10.50.1000.96.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  96  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29353194--29353269	37	2.1	37	97	0	143	35	14	17	32	1.90
29362687--29363595	46	19.7	46	95	2	1621	30	28	19	21	1.98
29364018--29364077	30	2.0	30	90	0	93	30	25	8	36	1.85
29373186--29373259	21	3.8	19	80	18	82	32	4	37	25	1.75
29373182--29373248	18	3.8	17	80	16	66	29	4	35	29	1.77
29381762--29381794	15	2.1	16	88	5	50	57	9	33	0	1.30
29384129--29384180	21	2.5	21	75	3	52	73	3	19	3	1.15
29397777--29397901	28	4.5	27	70	19	71	29	6	2	61	1.33
29397837--29397926	19	4.7	19	74	9	69	26	3	3	66	1.23
29397837--29397938	38	2.6	38	77	10	100	27	3	2	65	1.24
29397864--29397979	19	5.8	20	67	18	53	30	4	2	62	1.27
29400682--29400718	17	2.2	17	100	0	74	43	27	13	16	1.85
29401611--29401698	45	2.0	45	100	0	176	27	21	15	35	1.94
29402763--29402988	40	5.7	40	88	4	289	25	21	26	26	2.00
29402763--29403021	120	2.2	120	80	7	278	26	21	26	25	1.99
29403557--29403615	30	2.0	30	93	0	100	32	5	18	44	1.72
29404887--29404942	28	2.0	28	96	0	103	26	21	26	25	1.99
29404857--29405186	68	4.9	68	98	0	633	25	22	26	25	2.00
29404915--29405284	40	10.1	40	75	19	362	26	21	26	25	1.99
29404955--29405010	28	2.0	28	92	0	94	26	19	26	26	1.99
29405023--29405078	28	2.0	28	96	0	103	26	21	26	25	1.99
29404983--29405266	108	2.6	108	71	8	288	26	21	26	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29405091--29405146	28	2.0	28	96	0	103	26	21	26	25	1.99
29409129--29409203	22	3.3	22	65	17	62	29	10	33	26	1.90
29409121--29409701	47	12.4	47	94	0	930	33	9	30	26	1.89
29409819--29409898	37	2.2	37	86	4	108	23	17	31	27	1.97
29413035--29413092	11	4.9	11	82	12	62	77	1	5	15	1.02
29413034--29413091	12	4.8	12	85	6	64	79	1	5	13	0.98
29413046--29413091	14	3.5	13	94	5	76	78	0	6	15	0.95
29413046--29413094	13	3.9	12	89	10	80	73	0	8	18	1.07
29413137--29413162	1	26.0	1	100	0	52	100	0	0	0	0.00
29413129--29413271	71	1.9	71	86	6	196	58	13	9	18	1.62
29422674--29422788	58	2.0	58	98	0	221	32	15	20	31	1.94
29424807--29425048	50	4.9	50	85	2	292	21	26	21	29	1.99
29427655--29427717	32	2.0	32	96	0	117	34	6	1	57	1.34
29436672--29436721	25	2.0	25	92	0	82	24	20	24	32	1.98
29438775--29439039	27	9.8	27	83	6	322	30	17	24	27	1.97
29438775--29439039	81	3.3	81	86	0	368	30	17	24	27	1.97
29440424--29440766	40	8.6	40	88	3	415	26	27	20	24	1.99
29440698--29440775	40	1.9	41	82	10	97	26	28	20	24	1.99
29448450--29448714	40	6.7	40	85	5	286	26	27	21	24	1.99
29448417--29448714	80	3.7	80	79	9	263	25	27	21	25	1.99
29448646--29448723	40	1.9	41	82	10	97	26	28	20	24	1.99
29450223--29450359	27	5.1	27	85	0	184	32	18	22	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29450223--29450359	54	2.5	54	90	0	220	32	18	22	26	1.97
29450340--29450379	20	2.0	20	100	0	80	45	10	25	20	1.81
29450420--29450505	23	3.7	23	96	0	154	25	8	20	45	1.79
29450723--29450808	32	2.7	32	89	7	129	18	22	22	37	1.94
29450914--29450977	22	2.9	21	76	4	65	18	20	15	45	1.86
29450972--29451022	26	2.0	26	84	0	66	19	29	15	35	1.93
29451066--29451114	22	2.2	23	79	17	59	8	2	51	38	1.43
29451536--29451593	30	1.9	31	86	10	84	29	17	8	44	1.78
29455693--29455748	29	2.0	28	89	3	85	32	1	8	57	1.40
29455733--29455770	18	2.1	18	85	9	51	34	0	0	65	0.93
29457531--29457580	21	2.4	21	70	12	50	28	6	24	42	1.78
29463174--29463245	25	2.9	25	91	0	117	26	19	26	27	1.99
29463176--29463270	25	3.7	26	85	5	104	26	20	27	26	1.99
29469843--29469923	40	2.0	41	80	7	94	56	1	7	34	1.35
29471555--29471739	46	3.9	46	72	6	145	29	21	18	30	1.97
29471508--29471752	97	2.5	97	82	2	294	28	23	19	28	1.98
29483009--29483097	28	3.1	28	72	20	94	28	4	7	59	1.45
29482983--29483099	57	2.1	57	95	0	207	29	4	6	59	1.42
29482983--29483069	29	3.0	27	72	21	79	28	4	6	59	1.43
29484063--29484168	51	2.1	51	98	0	203	31	21	18	28	1.97
29484069--29484153	28	3.2	28	62	21	74	30	23	16	29	1.96
29488077--29488127	26	2.0	26	88	7	77	68	9	9	11	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29488504--29488561	13	4.3	13	86	6	80	68	0	17	13	1.20
29488503--29488564	7	9.0	7	85	8	83	67	0	17	14	1.23
29488503--29488564	20	3.0	21	88	6	83	67	0	17	14	1.23
29489789--29490743	87	11.0	87	94	0	1505	28	22	24	24	1.99
29491260--29491319	30	2.0	30	96	0	111	28	20	15	36	1.92
29497072--29497110	19	2.1	19	86	13	55	15	2	41	41	1.61
29505778--29505811	17	2.0	17	100	0	68	11	58	5	23	1.55
29512157--29512231	38	2.0	37	100	0	141	26	26	8	37	1.84
29512551--29512575	13	1.9	13	100	0	50	72	16	8	4	1.24
29521831--29521880	25	2.0	25	96	0	91	32	10	16	42	1.81
29522939--29522969	16	2.0	16	93	6	55	19	6	19	54	1.65
29527749--29527839	39	2.3	39	90	0	137	47	20	4	27	1.69
29531572--29531707	49	2.7	50	78	3	141	28	22	25	23	1.99
29542708--29542829	46	2.7	46	82	0	145	31	25	16	26	1.96
29542743--29542840	46	2.1	46	84	0	124	33	27	15	23	1.95
29555639--29555847	33	5.8	33	70	20	150	21	18	27	33	1.96
29555637--29555845	75	2.8	75	89	2	330	20	18	28	32	1.96
29556761--29556813	23	2.3	23	93	0	97	32	26	20	20	1.98
29557089--29557167	40	2.0	40	97	0	149	31	20	10	37	1.86
29557309--29557761	227	2.0	227	97	0	852	35	22	4	37	1.76
29563733--29563854	46	2.7	46	82	0	145	31	25	16	26	1.96
29563768--29563865	46	2.1	46	84	0	124	33	27	15	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29566109--29566151	21	2.0	21	100	0	86	51	9	20	18	1.74
29566105--29566131	14	1.9	14	100	0	54	48	7	22	22	1.75
29566605--29566667	32	2.0	32	96	3	119	49	12	6	31	1.66
29572801--29572862	32	2.0	32	96	3	117	46	12	8	32	1.71
29575295--29575421	64	2.0	64	92	0	209	39	15	3	40	1.66
29576255--29576668	126	3.3	126	93	0	659	32	20	21	26	1.97
29579647--29579857	116	1.8	116	87	0	314	46	4	6	41	1.51
29580046--29580092	21	2.2	21	84	0	58	14	19	31	34	1.92
29580996--29581021	7	3.7	7	100	0	52	57	15	0	26	1.38
29586711--29587163	84	5.4	84	100	0	906	42	14	13	29	1.84
29592085--29592259	68	2.6	68	89	0	269	24	20	16	39	1.92
29592072--29592268	68	2.9	67	83	6	261	23	21	17	37	1.94
29593948--29593980	3	11.3	3	87	6	50	63	0	36	0	0.95
29594172--29594229	19	2.9	19	84	5	71	32	0	13	53	1.40
29594283--29594658	49	7.7	49	83	5	478	30	1	13	54	1.46
29594283--29594605	27	13.1	25	75	18	297	30	1	13	54	1.47
29594287--29594648	97	3.7	97	93	3	579	30	1	13	54	1.47
29594801--29594875	38	1.9	39	94	2	134	54	4	2	38	1.33
29594987--29595028	16	2.7	15	85	7	57	38	2	2	57	1.25
29596652--29596681	6	5.0	6	91	0	51	33	36	30	0	1.58
29600015--29600059	22	2.1	21	91	4	72	0	33	2	64	1.06
29600017--29600068	22	2.8	18	75	25	54	0	36	1	61	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29600125--29600227	27	3.8	27	93	2	163	23	37	20	18	1.94
29616424--29616513	28	3.2	28	81	12	112	33	23	13	30	1.93
29616446--29616847	29	14.0	29	79	8	373	39	21	14	24	1.91
29619686--29619794	41	2.6	42	89	1	166	29	22	25	22	1.99
29619686--29619885	42	4.8	42	82	4	197	26	19	25	29	1.98
29619686--29619924	85	2.8	85	82	2	277	25	18	25	30	1.98
29622593--29622622	15	2.0	15	93	0	51	36	20	3	40	1.69
29626391--29626480	44	2.1	43	91	2	144	34	25	12	27	1.92
29637561--29637602	20	2.0	21	86	13	61	59	4	2	33	1.31
29638459--29638594	50	2.7	50	82	0	155	28	23	29	18	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144