genome.fa.s11.2.7.7.80.10.50.1000.77.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  77  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23288414--23288504	42	2.2	42	100	0	182	45	16	6	31	1.73
23291356--23291395	20	2.0	20	90	9	64	15	22	7	55	1.65
23291597--23291791	50	3.9	50	76	0	158	22	27	21	28	1.99
23291951--23292011	30	2.0	30	96	0	113	45	11	11	31	1.76
23291956--23292031	30	2.5	30	89	4	100	51	10	7	30	1.65
23294426--23294483	13	4.5	13	75	0	53	51	15	6	25	1.68
23295249--23295300	27	1.9	27	84	0	68	32	23	15	28	1.95
23298640--23298675	15	2.4	15	100	0	72	61	5	5	27	1.41
23301704--23301735	12	2.6	13	85	14	50	37	0	6	56	1.25
23302734--23302769	18	2.0	18	94	0	63	41	0	16	41	1.48
23310580--23310620	21	2.0	21	85	0	55	34	0	7	58	1.26
23311291--23311321	14	2.2	14	100	0	62	61	12	0	25	1.32
23314108--23314137	15	2.0	15	93	0	51	23	13	6	56	1.60
23314775--23314826	21	2.5	20	78	9	59	40	1	0	57	1.10
23315016--23315199	46	4.0	46	99	0	359	39	13	8	38	1.76
23315941--23315968	12	2.3	12	100	0	56	21	35	0	42	1.53
23318231--23318284	24	2.2	25	96	3	101	37	14	22	25	1.93
23324116--23324157	18	2.3	18	80	8	50	35	0	16	47	1.47
23325149--23325190	18	2.3	18	80	8	50	35	0	16	47	1.47
23326479--23326515	19	2.0	18	89	5	56	27	13	0	59	1.35
23328780--23328860	37	2.2	38	80	10	96	33	11	4	50	1.59
23329700--23329748	14	3.2	14	76	18	53	65	4	0	30	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23338037--23338087	25	2.0	25	100	0	102	47	23	17	11	1.81
23351679--23351720	22	2.1	19	86	13	57	54	0	2	42	1.13
23351783--23351839	30	1.9	30	82	3	71	43	12	10	33	1.76
23351962--23352020	27	2.1	28	78	6	66	25	11	22	40	1.88
23351974--23352037	27	2.4	27	91	0	110	18	15	17	48	1.81
23354740--23354942	46	4.3	48	88	7	265	35	14	21	28	1.92
23354674--23354942	98	2.7	98	92	0	448	34	14	22	28	1.93
23354906--23355051	37	4.0	37	93	1	242	36	16	21	24	1.94
23356123--23356199	38	2.0	38	100	0	154	53	10	18	18	1.72
23359440--23359729	145	2.0	147	82	4	363	41	10	9	38	1.72
23360856--23361127	77	3.5	78	88	4	358	32	16	13	37	1.88
23360891--23361175	153	1.8	155	80	8	339	34	14	12	37	1.85
23366484--23366513	15	2.0	15	100	0	60	33	0	6	60	1.23
23368371--23368423	24	2.3	24	78	18	60	50	11	1	35	1.49
23374156--23374225	29	2.3	30	92	4	115	31	4	18	45	1.69
23374156--23374225	31	2.3	29	90	4	104	31	4	18	45	1.69
23374156--23374255	29	3.2	32	81	14	102	32	6	16	46	1.71
23374726--23374763	17	2.2	18	85	4	51	28	5	15	50	1.66
23375452--23375503	17	3.1	17	83	8	61	34	5	15	44	1.70
23375474--23375507	17	2.1	16	89	10	52	29	11	14	44	1.81
23380887--23381007	44	2.9	42	83	9	147	22	14	28	33	1.94
23393680--23394198	257	2.0	257	99	0	1020	26	16	15	41	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23403209--23403246	3	12.7	3	100	0	76	31	0	0	68	0.90
23403607--23403692	39	2.2	38	78	13	88	34	10	2	52	1.49
23406538--23406575	3	12.7	3	94	0	67	28	0	2	68	1.03
23406946--23407433	241	2.0	242	97	0	924	32	9	5	52	1.57
23415946--23415990	23	2.0	23	86	8	65	66	6	6	20	1.38
23415947--23415996	23	2.2	23	82	7	57	70	6	8	16	1.32
23416731--23417009	139	2.0	139	99	0	549	20	11	23	44	1.84
23422652--23422704	24	2.2	24	83	3	63	18	22	9	49	1.76
23426999--23427092	47	2.0	47	95	0	170	29	11	11	46	1.76
23427056--23427133	37	2.1	37	100	0	156	26	12	14	46	1.80
23428788--23428827	16	2.4	18	76	16	50	45	2	2	50	1.28
23431395--23431431	19	1.9	19	94	0	65	35	0	40	24	1.55
23431394--23431431	18	2.1	19	90	5	60	34	0	42	23	1.55
23436699--23436750	24	2.2	24	92	0	86	51	7	3	36	1.49
23438111--23438165	24	2.3	24	90	0	83	10	27	34	27	1.90
23440906--23440983	31	2.5	30	91	2	120	21	32	26	19	1.97
23443510--23443622	34	3.3	33	79	11	122	42	15	15	26	1.87
23444593--23444705	34	3.3	33	79	11	122	42	15	15	26	1.87
23445555--23445592	15	2.4	16	86	4	51	73	2	18	5	1.14
23451669--23451727	18	3.3	18	75	11	50	61	8	13	16	1.56
23454199--23454227	9	3.2	9	100	0	58	10	0	31	58	1.31
23454282--23454782	125	4.0	125	89	1	765	29	16	21	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23457785--23458055	114	2.4	114	98	0	524	41	8	10	39	1.69
23458063--23459956	21	88.2	21	80	8	1830	25	0	27	46	1.57
23458381--23458436	27	2.0	27	86	3	76	25	0	28	46	1.53
23459800--23459852	27	2.0	26	85	10	72	20	0	24	54	1.44
23460226--23460272	21	2.2	21	85	7	69	2	25	34	38	1.68
23460038--23460552	255	2.0	256	93	0	870	27	16	21	34	1.94
23461666--23461703	20	1.9	20	89	10	60	57	5	2	34	1.35
23462681--23462757	11	6.9	11	77	14	54	41	1	33	23	1.63
23462681--23462756	22	3.4	22	85	5	100	40	1	34	23	1.63
23464067--23464165	47	2.1	47	100	0	198	46	4	6	43	1.47
23472544--23472590	18	2.6	18	93	3	76	46	6	10	36	1.64
23473191--23473240	25	2.0	25	96	0	91	52	6	16	26	1.66
23483462--23483486	13	1.9	13	100	0	50	24	12	8	56	1.62
23488277--23488329	27	1.9	28	88	11	83	22	9	1	66	1.31
23488562--23488595	17	2.0	17	88	0	50	26	2	8	61	1.40
23488826--23488878	27	1.9	28	88	11	83	22	9	1	66	1.31
23489111--23489144	17	2.0	17	88	0	50	26	2	8	61	1.40
23488095--23489194	549	2.0	549	100	0	2200	26	15	10	48	1.76
23489628--23489680	27	1.9	28	88	11	83	22	9	1	66	1.31
23489913--23489946	17	2.0	17	88	0	50	26	2	8	61	1.40
23488821--23490424	802	2.0	802	100	0	3208	30	12	9	47	1.72
23492155--23492274	60	2.0	62	88	3	181	41	20	4	33	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23494001--23494054	12	4.5	12	80	13	58	81	1	14	1	0.86
23494001--23494054	18	3.1	17	84	12	65	81	1	14	1	0.86
23494003--23494056	13	4.4	12	82	17	58	81	1	14	1	0.86
23494331--23494417	45	1.9	46	85	2	122	27	13	9	49	1.73
23495291--23495427	44	3.2	43	65	17	104	28	27	21	22	1.99
23495025--23496014	86	11.4	86	88	2	1243	27	24	23	24	2.00
23495025--23496014	174	5.7	172	88	1	1243	27	24	23	24	2.00
23495853--23495991	44	3.2	42	70	17	104	24	24	24	26	2.00
23496057--23496251	95	2.1	95	89	1	293	28	16	24	30	1.97
23498047--23498082	18	2.0	18	100	0	72	16	16	22	44	1.86
23498378--23498430	27	1.9	28	88	11	83	22	9	1	66	1.31
23498663--23498696	17	2.0	17	88	0	50	26	2	8	61	1.40
23499676--23499720	23	2.0	23	82	8	56	44	15	6	33	1.73
23500269--23500376	25	4.4	25	84	10	141	37	14	12	35	1.84
23500269--23500376	50	2.2	49	89	1	171	37	14	12	35	1.84
23500269--23500405	50	2.8	50	82	5	136	37	14	12	35	1.84
23501581--23501653	25	2.9	25	85	4	94	30	26	20	23	1.99
23503119--23503164	23	2.0	23	82	0	56	43	17	17	21	1.88
23504200--23504227	14	2.0	14	100	0	56	7	28	0	64	1.20
23504180--23504224	19	2.5	18	83	16	58	6	26	0	66	1.16
23507541--23507587	18	2.6	18	86	6	60	42	2	0	55	1.12
23507477--23508063	121	5.0	116	81	11	621	42	1	3	52	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23507671--23508070	121	3.3	121	93	1	669	42	1	3	53	1.23
23508197--23508302	44	2.5	41	75	18	117	35	29	3	31	1.75
23508214--23508302	44	2.0	46	88	4	137	38	28	4	29	1.76
23508284--23508332	16	3.1	16	90	0	80	22	32	6	38	1.79
23511985--23512024	17	2.3	18	82	4	55	27	0	5	67	1.11
23511981--23512016	18	1.9	18	88	5	54	27	0	5	66	1.13
23513344--23513452	9	11.8	9	70	14	53	35	0	4	58	1.25
23513477--23513553	30	2.6	30	81	6	86	33	1	6	58	1.32
23513507--23513549	21	2.0	21	86	8	61	30	0	9	60	1.28
23519604--23519656	27	2.0	27	96	0	97	28	18	13	39	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144