genome.fa.s11.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  36  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10891187--10891276	25	3.6	25	80	5	110	33	18	24	23	1.97
10893301--10893430	57	2.3	59	84	9	164	27	19	6	46	1.73
10900057--10900107	26	2.0	26	96	0	93	47	21	7	23	1.77
10910584--10910625	19	2.2	18	87	8	57	21	7	2	69	1.25
10910770--10910935	88	1.9	85	87	3	242	36	10	16	35	1.84
10911566--10911614	21	2.3	21	86	6	73	20	14	26	38	1.91
10914404--10914491	45	2.0	45	93	4	151	50	4	1	44	1.30
10915916--10916071	77	2.0	77	94	0	276	36	22	14	26	1.92
10917590--10917874	56	5.1	57	83	4	305	43	16	10	29	1.81
10917626--10917874	113	2.2	112	85	3	331	43	16	9	30	1.79
10918627--10918686	6	9.7	6	91	7	84	20	0	11	68	1.20
10918707--10918750	18	2.4	18	88	0	61	13	2	43	40	1.57
10920134--10920171	6	6.2	6	90	3	58	0	60	0	39	0.97
10920136--10920171	18	2.0	18	100	0	72	0	61	0	38	0.96
10920429--10920467	12	3.2	12	96	0	69	64	7	12	15	1.49
10920794--10920819	13	2.0	13	100	0	52	15	7	7	69	1.35
10922245--10922283	12	3.3	12	85	3	53	43	35	15	5	1.69
10928306--10928494	90	2.1	92	96	2	355	37	3	4	55	1.36
10934126--10934520	126	3.1	126	83	1	470	30	15	16	37	1.90
10934590--10934694	34	3.1	34	82	5	131	43	15	0	40	1.53
10937698--10937803	25	4.2	25	79	12	119	50	4	6	37	1.49
10937691--10937760	23	3.0	23	79	12	88	51	7	8	32	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10941212--10941298	28	3.1	28	69	17	74	43	1	2	52	1.21
10941224--10941428	54	3.6	54	71	17	175	43	2	3	49	1.34
10941376--10941417	15	2.7	16	82	14	52	45	0	2	52	1.13
10941367--10941408	15	2.9	15	82	10	52	47	0	0	52	1.00
10941607--10941641	18	2.0	17	88	5	52	45	0	0	54	0.99
10942996--10943034	19	2.1	19	90	0	60	51	0	0	48	1.00
10944267--10944292	2	13.0	2	100	0	52	0	50	0	50	1.00
10945869--10945910	21	2.0	21	86	9	59	2	4	16	76	1.07
10951750--10951909	67	2.4	67	93	0	275	42	20	8	28	1.82
10954571--10954601	15	2.0	16	93	6	55	64	0	0	35	0.94
10954825--10954865	22	1.9	21	85	5	55	65	7	0	26	1.18
10959381--10959432	24	2.2	24	85	0	68	36	5	9	48	1.60
10966908--10966933	3	8.7	3	100	0	52	69	0	0	30	0.89
10976320--10976369	24	2.1	24	96	0	91	24	14	22	40	1.90
10978083--10978118	15	2.5	14	86	8	54	44	8	0	47	1.33
10981235--10981303	2	34.5	2	100	0	138	50	0	49	0	1.00
10983356--10983467	54	2.1	54	81	3	127	25	24	28	22	1.99
10983891--10983948	29	1.9	29	83	13	73	39	3	18	37	1.68
10985006--10985090	11	8.2	11	77	20	78	63	0	2	34	1.07
10985025--10985108	9	9.0	9	75	17	66	67	0	1	30	0.98
10985001--10985135	39	3.5	38	81	15	145	67	0	2	30	1.03
10985010--10985119	50	2.2	51	93	4	188	62	0	2	34	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10985075--10985106	16	2.0	16	93	0	55	71	0	0	28	0.86
10985116--10985141	8	3.2	8	100	0	52	88	0	0	11	0.52
10985027--10985134	50	2.1	49	86	8	146	69	0	1	28	0.99
11006632--11006712	14	5.8	14	70	10	58	55	2	2	39	1.26
11006612--11006699	39	2.2	39	84	6	106	53	3	4	38	1.38
11006841--11006891	3	17.3	3	87	4	68	66	3	0	29	1.09
11008489--11008638	70	2.1	70	85	4	196	32	16	20	30	1.95
11010493--11010533	17	2.4	17	92	8	66	26	0	0	73	0.84
11010500--11010533	11	3.2	10	88	12	50	26	0	0	73	0.83
11010500--11010533	5	6.4	5	87	12	50	26	0	0	73	0.83
11010579--11010612	14	2.7	12	90	9	50	5	14	0	79	0.91
11011632--11011705	21	3.5	21	100	0	148	41	8	18	31	1.80
11011488--11011875	214	1.8	214	100	0	776	32	11	19	35	1.88
11014111--11014140	14	2.1	14	93	0	51	40	3	3	53	1.34
11018116--11018189	21	3.5	21	100	0	148	41	8	18	31	1.80
11020595--11020624	14	2.1	14	93	0	51	40	3	3	53	1.34
11024982--11025140	10	16.3	10	76	18	83	70	0	29	0	0.88
11025004--11025172	34	4.7	34	74	15	135	69	0	29	0	0.93
11025001--11025098	52	1.9	52	73	17	50	70	0	29	0	0.88
11024981--11025172	72	2.6	74	82	12	229	69	0	29	0	0.92
11024983--11025170	44	4.2	44	74	10	152	71	0	28	0	0.90
11025497--11026269	318	2.4	318	93	0	1296	51	8	10	29	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11025495--11026742	160	8.0	150	69	15	729	51	8	10	29	1.66
11025815--11026737	468	2.0	468	93	0	1578	50	8	10	30	1.67
11026655--11026811	68	2.3	69	90	4	255	49	8	14	28	1.72
11026846--11027358	160	3.2	160	69	16	473	50	8	10	29	1.67
11026344--11027129	386	2.0	386	94	0	1374	50	8	11	29	1.68
11032777--11032831	18	2.9	19	78	13	60	65	7	7	20	1.41
11032902--11032930	4	7.5	4	92	7	51	27	44	0	27	1.54
11037020--11037154	40	3.4	39	77	5	128	39	20	22	17	1.92
11037256--11037326	25	3.2	25	62	29	68	15	30	26	26	1.96
11037195--11037416	42	5.3	42	92	1	349	13	27	27	31	1.94
11037195--11037439	125	2.0	125	88	1	366	14	27	25	31	1.95
11038320--11038350	16	1.9	16	93	0	53	25	0	45	29	1.54
11039561--11039617	25	2.4	22	80	13	60	19	42	1	36	1.62
11039593--11039631	16	2.6	15	84	11	53	23	35	5	35	1.77
11039853--11039920	33	2.1	33	94	0	118	32	2	29	35	1.73
11040161--11040198	17	2.2	17	95	0	67	10	36	13	39	1.79
11040420--11040610	60	3.1	60	62	18	140	40	37	6	15	1.74
11040376--11040622	123	2.0	123	98	0	476	40	34	8	16	1.79
11041398--11041450	24	2.2	24	96	0	97	43	3	3	49	1.38
11041557--11041602	22	2.1	22	88	8	67	45	10	4	39	1.59
11041542--11041692	56	2.7	56	98	0	293	47	11	2	39	1.54
11041613--11041658	22	2.1	22	91	0	74	47	10	2	39	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11041635--11041781	34	4.5	34	78	10	180	48	9	3	38	1.52
11041679--11041907	9	26.7	9	65	18	60	44	13	3	38	1.60
11041542--11041716	56	3.1	54	91	6	230	48	10	2	38	1.52
11041579--11041787	96	2.3	90	89	6	303	47	10	3	38	1.55
11041787--11041865	34	2.3	34	80	0	86	43	13	1	41	1.53
11041909--11041964	25	2.2	25	83	0	67	44	14	5	35	1.68
11041945--11041978	16	2.1	16	94	0	59	52	14	0	32	1.42
11052344--11052474	66	2.0	66	86	3	183	42	19	22	15	1.88
11052369--11052513	66	2.2	66	82	7	170	42	17	26	14	1.87
11052504--11052596	21	4.4	21	83	0	123	35	17	44	3	1.65
11052902--11053107	43	4.7	42	78	12	195	21	17	31	29	1.96
11052901--11053107	89	2.4	89	80	11	223	21	17	30	29	1.97
11052904--11053171	43	6.1	42	77	8	151	25	19	28	26	1.99
11053095--11053240	43	3.4	44	81	10	167	36	23	19	19	1.94
11053981--11054035	27	2.0	28	82	10	69	49	5	3	41	1.43
11055798--11055840	23	1.9	22	90	4	68	44	13	4	37	1.65
11055798--11055933	19	6.8	20	76	13	93	38	15	8	37	1.79
11055821--11055932	40	2.8	39	86	5	129	36	15	9	38	1.80
11056147--11056343	44	4.5	44	76	15	171	25	25	20	27	1.99
11056137--11056264	45	2.9	45	84	12	174	25	28	18	27	1.98
11056147--11056343	84	2.3	86	82	11	217	25	25	20	27	1.99
11056358--11056973	132	4.7	132	92	0	982	25	23	18	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11058108--11058150	20	2.2	20	86	0	59	4	18	0	76	0.95
11058114--11058159	20	2.2	21	84	7	58	2	21	0	76	0.90
11058113--11058158	14	3.4	14	79	11	51	2	23	0	73	0.94
11059109--11059272	82	2.0	82	97	0	310	36	14	17	31	1.90
11061910--11061968	31	1.9	31	96	0	109	33	27	22	16	1.95
11062361--11062557	98	2.0	98	95	0	358	37	25	10	27	1.88
11063293--11063443	19	7.8	19	80	2	185	35	16	9	37	1.82
11063293--11063436	38	3.7	38	92	1	216	36	15	9	38	1.81
11063571--11063606	19	1.9	19	88	5	56	61	2	0	36	1.11
11075146--11075189	23	1.9	23	86	9	63	56	6	0	36	1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144