genome.fa.s11.2.7.7.80.10.50.1000.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  15  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3922447--3922488	16	2.6	16	92	0	66	42	7	2	47	1.43
3922462--3922516	22	2.5	22	84	0	74	43	1	1	52	1.22
3926090--3926198	44	2.5	44	96	0	200	34	21	15	28	1.94
3926771--3926810	14	2.9	14	84	0	53	32	7	17	42	1.77
3926794--3926833	20	2.0	20	90	0	62	27	10	12	50	1.72
3926779--3926845	34	1.9	35	87	3	100	32	8	11	46	1.72
3929132--3929175	18	2.4	18	80	0	52	56	0	0	43	0.99
3930718--3930762	18	2.5	18	89	7	65	44	0	0	55	0.99
3934795--3934824	11	2.7	11	94	0	51	70	6	3	20	1.25
3952412--3952452	21	2.0	21	90	0	64	19	29	21	29	1.98
3961633--3961673	21	2.0	21	90	0	64	29	21	29	19	1.98
3978408--3978509	52	2.0	52	86	5	145	30	10	22	36	1.88
3992606--3992636	9	3.4	9	90	0	53	25	12	22	38	1.90
3994070--3994128	9	6.4	9	79	11	66	22	8	27	42	1.82
3997935--3997986	24	2.2	24	85	0	68	57	5	1	34	1.33
4001844--4001880	13	2.8	13	87	0	56	29	8	21	40	1.82
4022503--4022638	40	3.5	40	71	9	118	35	25	15	24	1.94
4022794--4022840	24	2.0	24	84	16	62	51	17	0	31	1.46
4028073--4028128	27	2.0	28	89	3	87	41	1	1	55	1.21
4028075--4028128	28	2.0	25	82	10	63	42	1	1	53	1.22
4033646--4033670	13	1.9	13	100	0	50	72	0	0	28	0.86
4037309--4037335	6	4.5	6	100	0	54	55	0	14	29	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4045671--4045714	17	2.7	16	79	6	52	20	13	2	63	1.40
4051172--4051314	44	3.2	44	77	7	137	28	27	17	26	1.98
4051322--4051581	95	2.7	95	95	2	477	28	21	21	28	1.98
4051483--4051736	134	1.9	135	91	1	420	29	23	19	28	1.98
4051714--4052057	86	4.0	86	91	0	517	26	24	22	26	2.00
4051783--4052003	42	5.2	42	62	20	107	24	23	24	27	2.00
4052485--4052691	108	1.9	108	85	2	281	47	10	16	25	1.78
4053493--4053547	15	3.7	15	79	11	60	9	1	5	83	0.86
4053493--4053549	29	2.0	29	86	6	80	8	3	7	80	1.00
4059605--4059657	3	17.7	3	96	0	97	69	0	30	0	0.88
4060113--4060170	15	3.7	15	80	13	64	46	1	1	50	1.22
4068026--4068554	263	2.0	263	98	0	1031	41	20	13	23	1.88
4069872--4069931	27	2.3	27	88	2	86	40	6	1	51	1.38
4070186--4070242	19	3.1	19	79	5	80	36	12	0	50	1.40
4070322--4070378	18	3.0	19	76	7	62	36	12	0	50	1.40
4070996--4071060	28	2.4	28	94	2	114	46	0	10	43	1.38
4079345--4079374	15	1.9	16	93	6	53	23	6	0	70	1.11
4092785--4092879	44	2.1	47	84	11	126	35	1	2	61	1.15
4094864--4094904	19	2.2	19	86	0	55	58	9	0	31	1.31
4094873--4094933	29	2.1	28	85	11	79	54	4	0	40	1.22
4098138--4098172	3	11.7	3	100	0	70	68	0	31	0	0.90
4104385--4104417	16	2.1	16	94	0	57	39	6	9	45	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4111712--4111758	19	2.5	19	79	3	51	63	4	6	25	1.36
4115519--4115568	26	2.0	25	84	11	66	24	10	8	58	1.57
4116215--4116421	89	2.3	88	78	5	211	36	17	11	34	1.86
4116429--4116571	72	2.0	72	81	6	166	62	4	2	30	1.28
4117445--4117703	51	5.2	51	83	8	329	32	15	21	30	1.94
4120529--4120777	50	4.8	50	85	4	284	20	29	24	26	1.99
4120528--4120777	100	2.4	104	88	6	357	20	29	24	26	1.99
4120872--4120903	13	2.5	13	94	0	55	56	12	0	31	1.37
4121115--4121172	30	1.9	30	89	0	89	31	24	3	41	1.71
4128123--4128371	50	4.8	50	85	4	284	20	29	24	26	1.99
4128122--4128371	100	2.4	104	88	6	357	20	29	24	26	1.99
4128466--4128497	13	2.5	13	94	0	55	56	12	0	31	1.37
4128709--4128766	30	1.9	30	89	0	89	31	24	3	41	1.71
4134118--4134552	51	8.3	51	80	8	458	31	15	23	29	1.95
4134118--4134552	102	4.1	102	83	8	582	31	15	23	29	1.95
4134366--4134404	7	5.6	7	84	0	51	38	7	33	20	1.81
4134366--4134405	14	2.9	14	88	0	62	37	7	35	20	1.81
4134315--4134456	65	2.2	65	94	0	248	32	13	26	28	1.94
4134277--4134503	116	2.0	116	93	0	391	32	14	23	29	1.95
4134213--4134552	167	2.0	167	89	0	518	31	15	23	29	1.95
4134162--4134554	218	1.8	218	93	0	678	31	15	23	29	1.95
4135614--4135686	37	2.0	37	86	5	103	31	4	4	60	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4135651--4135723	29	2.5	30	84	6	87	38	4	1	56	1.27
4135789--4135916	67	1.9	68	82	7	163	35	10	21	32	1.88
4143616--4143688	31	2.3	32	88	6	105	39	12	12	35	1.80
4149222--4149278	24	2.4	24	80	8	62	38	10	3	47	1.55
4153980--4154017	20	1.9	20	88	0	58	73	0	0	26	0.83
4153980--4154021	7	6.3	7	81	8	52	71	0	0	28	0.86
4159703--4159794	47	2.0	47	95	0	166	32	25	18	23	1.97
4162317--4162370	4	13.5	4	100	0	108	24	0	25	50	1.50
4167569--4167683	30	3.8	30	88	2	160	46	6	21	26	1.75
4167579--4167683	15	7.0	15	68	12	72	45	6	21	25	1.76
4167570--4167693	60	2.0	61	89	1	187	44	5	23	26	1.75
4168319--4168558	62	4.1	60	81	9	255	43	14	29	12	1.82
4168368--4168509	60	2.4	59	86	4	194	45	14	28	11	1.80
4168335--4168574	53	4.2	58	77	13	230	44	14	29	11	1.80
4168631--4168762	65	2.0	65	88	2	194	46	6	12	35	1.66
4171253--4171351	45	2.2	45	98	1	189	30	13	12	44	1.80
4194411--4194534	62	2.0	61	96	3	232	51	6	18	23	1.69
4195646--4195688	23	1.9	22	85	4	59	62	4	0	32	1.15
4198298--4198338	21	2.0	21	100	0	82	26	14	19	39	1.90
4220791--4220832	18	2.3	19	91	4	68	66	0	0	33	0.92
4225721--4225858	70	2.0	70	98	0	267	34	13	27	24	1.93
4236217--4236273	28	2.0	28	100	0	114	26	24	7	42	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4237997--4238056	31	1.9	31	83	6	77	35	11	8	45	1.71
4238282--4238343	32	2.0	31	90	3	97	35	3	8	53	1.47
4256984--4257128	71	2.0	71	82	5	177	25	22	21	31	1.98
4258784--4258842	21	2.8	21	76	0	73	38	15	28	16	1.89
4258780--4258897	42	2.8	43	81	8	127	45	17	21	15	1.85
4258828--4258888	21	2.9	21	67	0	59	49	19	14	16	1.80
4259384--4259423	19	2.0	19	85	9	53	40	10	5	45	1.60
4261384--4261420	16	2.3	16	100	0	74	37	5	35	21	1.77
4261400--4261490	46	2.0	46	93	4	159	26	4	30	38	1.76
4261400--4261507	46	2.5	44	85	11	145	28	3	31	36	1.75
4261649--4261687	17	2.5	15	84	15	60	61	0	0	38	0.96
4261654--4261687	17	2.0	17	100	0	68	58	0	0	41	0.98
4261720--4261759	20	2.0	21	85	5	55	60	5	0	35	1.19
4261611--4261894	56	5.1	54	68	19	136	52	3	1	42	1.25
4264492--4264536	22	2.0	22	83	12	56	51	2	8	37	1.46
4265379--4265403	13	1.9	13	100	0	50	32	8	40	20	1.81
4266685--4266738	26	2.0	26	85	10	72	33	0	1	64	1.04
4270368--4270393	5	5.2	5	100	0	52	80	0	19	0	0.71
4280969--4281018	17	2.7	20	78	18	70	10	0	44	46	1.37
4285608--4285657	17	2.7	20	78	18	70	10	0	44	46	1.37
4289581--4289762	42	4.3	42	82	1	195	43	17	19	18	1.88
4289609--4289661	21	2.5	21	78	0	61	41	18	24	15	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4289604--4289757	84	1.8	84	85	0	218	44	16	20	18	1.87
4289931--4290023	45	2.1	45	93	0	159	46	15	1	37	1.53
4291793--4291832	17	2.4	16	84	8	53	70	2	0	27	1.01
4292108--4292164	29	1.9	29	82	3	69	29	21	12	36	1.90
4297101--4297140	17	2.4	17	83	8	55	77	0	2	20	0.88
4298594--4298664	34	2.1	33	92	2	115	39	7	5	47	1.54
4298844--4298877	5	7.0	5	90	6	52	0	0	14	85	0.60
4298844--4298878	14	2.4	14	90	4	52	0	0	14	85	0.59
4310398--4310457	29	2.1	29	100	0	120	36	16	23	23	1.94
4312777--4313555	388	2.0	388	99	0	1531	36	22	15	25	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144