genome.fa.s11.2.7.7.80.10.50.1000.122.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  122  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37956592--37956688	39	2.5	40	85	11	137	18	17	22	41	1.90
37964157--37964244	30	2.9	30	75	14	90	72	1	5	20	1.11
37964157--37964244	20	4.3	20	75	17	83	72	1	5	20	1.11
37964152--37964253	12	8.2	12	72	10	62	70	1	5	21	1.18
37964152--37964246	3	32.7	3	74	10	56	70	2	5	22	1.18
37969754--37969993	27	8.8	27	81	1	237	22	17	20	38	1.93
37969760--37969993	54	4.3	55	86	0	265	23	17	19	39	1.92
37974839--37974885	22	2.1	22	92	0	76	36	2	29	31	1.70
37981566--37981603	20	1.9	20	94	0	67	68	2	2	26	1.16
37994370--37994457	37	2.4	37	92	3	144	26	14	17	42	1.87
38000371--38000471	45	2.4	39	73	20	105	39	19	18	21	1.92
38000699--38000758	20	2.9	22	71	19	65	46	21	5	26	1.72
38000674--38000758	40	2.1	41	86	6	120	44	18	8	28	1.78
38004174--38004302	66	2.0	66	96	0	240	42	6	12	38	1.68
38010770--38010800	16	1.9	16	100	0	62	58	0	16	25	1.38
38011199--38011237	20	1.9	21	89	5	62	5	15	0	79	0.90
38031053--38031082	3	10.0	3	92	0	51	33	36	0	30	1.58
38036541--38036679	65	2.1	65	94	1	242	26	25	14	33	1.94
38044277--38044320	23	2.0	23	86	4	63	45	13	6	34	1.70
38045602--38045636	17	2.1	17	94	0	61	54	14	11	20	1.70
38053985--38054036	15	3.6	15	80	12	56	44	0	1	53	1.11
38053923--38054152	120	1.9	120	97	0	433	42	1	6	49	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38053933--38054120	61	3.1	61	70	14	199	42	1	6	48	1.39
38054101--38054149	15	2.9	18	80	20	61	44	0	0	55	0.99
38054101--38054155	15	3.4	16	80	16	53	43	0	1	54	1.10
38054300--38054390	45	2.0	45	85	2	121	37	28	6	27	1.82
38054371--38054439	16	4.2	16	96	3	129	37	37	0	24	1.56
38054371--38054439	33	2.1	32	97	2	129	37	37	0	24	1.56
38056143--38056209	29	2.3	30	84	2	82	19	25	38	16	1.92
38057073--38057112	20	2.0	20	85	9	55	12	32	12	42	1.80
38057113--38057157	20	2.3	20	88	3	65	6	6	15	71	1.29
38057817--38057857	17	2.4	17	91	0	64	36	2	0	60	1.10
38057817--38057862	14	3.1	14	87	9	56	41	2	0	56	1.11
38058240--38058328	44	2.0	43	89	2	133	49	3	7	39	1.49
38059039--38059067	9	3.3	9	95	4	51	65	0	0	34	0.93
38068310--38068395	34	2.5	34	83	7	111	20	12	33	32	1.91
38068323--38068407	34	2.5	34	86	3	100	21	14	32	31	1.93
38072989--38073047	16	3.8	16	80	17	70	23	0	6	69	1.12
38080947--38080991	22	2.1	22	88	12	67	48	0	8	42	1.34
38081514--38081546	17	1.9	17	93	0	57	51	18	0	30	1.46
38086836--38086917	25	3.3	25	76	6	78	37	20	25	15	1.93
38091891--38091957	29	2.3	29	86	0	98	38	11	23	25	1.89
38091948--38092020	30	2.4	30	93	0	119	41	12	27	19	1.87
38093243--38093312	30	2.3	30	90	0	113	20	30	30	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38102120--38102358	120	2.0	120	98	0	460	32	15	15	37	1.88
38106651--38106675	9	2.8	9	100	0	50	72	0	0	28	0.86
38106677--38106726	13	3.6	14	71	17	50	58	12	0	30	1.34
38111086--38111194	28	3.9	28	83	4	121	30	23	19	26	1.98
38111280--38111365	28	3.1	28	82	0	91	37	16	12	33	1.87
38111326--38111365	14	2.9	14	76	0	53	37	17	15	30	1.90
38114381--38114447	25	2.6	26	79	6	75	29	19	28	22	1.98
38117392--38117491	39	2.5	39	81	3	119	36	4	16	44	1.66
38119016--38119135	41	2.9	40	82	2	123	30	21	18	30	1.97
38120413--38120438	10	2.6	10	100	0	52	61	19	7	11	1.53
38120546--38120591	25	1.9	23	83	16	58	39	13	0	47	1.42
38122661--38124482	911	2.0	911	99	0	3635	34	22	10	31	1.89
38125064--38125110	12	3.8	12	78	13	51	23	0	2	74	0.93
38128573--38128605	14	2.4	14	85	5	50	33	15	6	45	1.70
38130554--38130762	94	2.2	94	80	3	233	24	24	16	33	1.96
38133883--38133937	21	2.6	21	88	0	74	27	0	30	41	1.56
38134783--38134821	20	1.9	21	89	5	62	56	0	0	43	0.99
38134870--38134964	17	5.4	18	68	23	60	47	0	3	49	1.17
38144886--38144921	19	1.9	18	88	5	54	80	2	11	5	0.98
38145441--38145484	18	2.5	17	82	13	54	11	4	9	75	1.19
38145438--38145484	22	2.1	22	84	0	58	12	4	8	74	1.19
38147353--38147461	31	3.5	31	82	2	121	37	16	14	31	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38158676--38158740	7	9.0	7	79	12	53	84	9	1	4	0.82
38158675--38158739	9	7.8	8	77	20	62	86	7	1	4	0.77
38158675--38158731	1	57.0	1	75	0	51	87	7	1	3	0.71
38159494--38159679	93	2.0	96	87	4	270	26	15	10	48	1.76
38160487--38161107	44	14.5	43	71	10	324	30	21	20	26	1.98
38160569--38161018	85	5.2	84	70	13	256	31	22	20	25	1.98
38160478--38161162	129	5.3	129	89	0	985	31	22	20	26	1.98
38168074--38168194	55	2.2	55	87	0	179	33	24	14	26	1.94
38172104--38172159	26	2.2	26	80	6	60	17	21	26	33	1.96
38172251--38172295	24	1.9	24	90	4	74	20	22	17	40	1.92
38172243--38172305	23	2.7	24	80	2	74	22	22	19	36	1.95
38173420--38173489	35	2.0	35	100	0	140	28	2	25	42	1.69
38176880--38176938	25	2.4	25	85	2	75	16	22	18	42	1.89
38178197--38178276	42	1.9	42	82	5	99	18	26	35	20	1.95
38182952--38182993	18	2.4	18	81	14	52	42	0	11	45	1.41
38190456--38190590	40	3.4	38	75	11	121	31	24	17	26	1.97
38190456--38190591	41	3.4	41	74	10	122	32	24	16	26	1.96
38191559--38191641	5	17.0	5	78	12	84	55	1	1	42	1.15
38195403--38195439	16	2.3	16	86	13	58	40	0	0	59	0.97
38203513--38203580	34	2.0	34	94	0	118	48	7	20	23	1.74
38207400--38207472	30	2.5	29	82	4	92	24	26	32	16	1.96
38223704--38223742	20	2.0	20	100	0	78	35	7	10	46	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38223840--38223878	20	2.0	20	94	0	69	48	2	0	48	1.15
38223918--38223953	18	2.0	18	88	0	54	61	8	0	30	1.26
38227780--38227839	28	2.1	28	84	6	77	28	1	5	65	1.23
38237585--38237630	23	2.0	23	83	8	58	17	10	0	71	1.13
38249149--38249190	16	2.5	16	88	7	57	23	0	2	73	0.94
38249565--38249673	41	2.7	41	77	4	114	30	20	18	31	1.96
38249749--38249897	44	3.4	43	76	10	124	23	23	24	28	1.99
38249819--38250246	216	2.0	217	91	0	687	25	25	19	29	1.98
38250225--38250541	131	2.4	131	91	0	517	23	23	22	29	1.99
38261263--38261295	17	1.9	17	93	0	57	33	3	0	63	1.10
38269379--38269415	11	3.4	11	88	0	56	54	0	0	45	1.00
38269379--38269473	24	4.1	22	70	14	66	54	0	3	42	1.16
38269383--38269454	22	3.2	22	80	9	83	54	0	4	41	1.20
38269384--38269465	24	3.5	24	79	11	89	54	0	3	41	1.18
38274495--38274534	20	2.0	20	90	0	62	40	15	15	30	1.87
38286698--38286756	30	2.0	30	93	0	100	47	8	15	28	1.74
38287978--38288021	3	14.7	3	95	0	79	31	2	0	65	1.05
38300578--38301441	49	17.7	50	66	8	328	32	25	20	21	1.97
38300569--38301440	96	8.9	96	89	4	1017	33	24	19	22	1.97
38302898--38302962	3	21.7	3	96	0	121	32	1	0	66	1.01
38302882--38302962	12	6.4	13	87	12	100	32	1	1	65	1.08
38311221--38311345	67	1.9	66	90	5	198	25	22	11	40	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38317762--38317827	27	2.5	26	82	7	87	21	16	19	42	1.89
38328774--38328826	26	2.0	26	82	13	65	26	5	0	67	1.12
38328777--38328815	18	2.2	18	90	9	62	25	5	0	69	1.09
38328844--38328875	10	2.8	12	86	13	50	46	0	0	53	1.00
38328917--38328968	19	2.7	19	81	0	59	13	3	3	78	1.02
38335049--38335726	88	7.7	88	85	1	865	28	27	22	21	1.99
38335049--38335726	175	3.9	176	86	1	885	28	27	22	21	1.99
38335512--38335647	44	3.1	42	73	8	137	27	30	24	17	1.97
38335049--38335682	263	2.4	265	87	1	925	29	27	22	21	1.99
38335542--38335681	44	3.2	44	71	8	131	26	26	24	22	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144