genome.fa.s11.2.7.7.80.10.50.1000.88.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  88  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26610333--26610371	17	2.3	17	86	8	53	30	0	2	66	1.05
26610337--26610382	23	2.0	22	83	8	56	26	0	6	67	1.15
26618153--26618201	3	16.0	3	80	4	53	67	0	6	26	1.14
26619769--26620530	44	17.0	44	76	7	573	29	20	17	32	1.95
26619910--26620585	367	1.8	366	80	5	803	29	20	17	32	1.96
26630764--26630903	68	2.1	68	97	1	264	17	45	0	36	1.49
26631171--26631381	84	2.5	84	84	6	268	22	20	4	52	1.65
26636143--26636204	28	2.2	28	97	0	115	41	22	9	25	1.84
26644609--26644759	59	2.6	58	81	3	169	28	17	11	42	1.84
26644613--26644778	58	2.9	57	79	5	154	28	15	12	43	1.83
26645825--26645874	13	3.8	13	86	0	73	36	8	20	36	1.82
26648314--26648349	11	3.3	11	92	0	63	11	25	5	58	1.54
26650018--26650065	18	2.8	18	87	6	64	83	14	0	2	0.74
26650018--26650082	19	3.4	19	79	10	69	81	13	1	3	0.88
26650107--26650142	13	2.8	13	91	4	56	63	0	8	27	1.23
26650314--26650347	17	1.9	18	94	5	61	17	41	23	17	1.90
26652450--26652522	29	2.5	29	93	0	119	41	9	28	20	1.84
26663879--26663935	25	2.2	27	76	20	68	50	5	0	43	1.24
26679420--26680233	44	17.8	45	68	12	271	30	17	21	30	1.96
26679404--26679953	181	3.0	181	85	1	726	30	17	20	31	1.96
26681573--26681663	8	10.6	9	72	18	52	65	1	3	29	1.15
26681579--26681643	7	9.1	7	73	15	53	64	1	3	30	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26681573--26681644	21	3.3	21	76	11	65	65	1	2	30	1.15
26681639--26681670	10	3.2	10	95	0	55	68	0	6	25	1.12
26681694--26681755	26	2.4	26	87	10	92	67	1	0	30	1.00
26681693--26681755	10	7.2	9	75	21	55	68	1	0	30	0.99
26681696--26681762	26	2.6	25	79	13	73	67	1	0	31	1.00
26681799--26681845	18	2.6	18	77	12	51	55	8	0	36	1.31
26681878--26681943	20	3.0	21	74	14	55	57	3	3	36	1.29
26694202--26694340	50	2.8	50	75	0	125	20	28	23	27	1.99
26694737--26694794	30	1.9	30	85	0	80	31	24	8	36	1.85
26702079--26702326	46	5.5	46	94	1	412	27	24	16	32	1.96
26710386--26710413	8	3.5	8	100	0	56	53	0	10	35	1.36
26711241--26711367	45	2.8	45	85	0	164	40	14	22	21	1.90
26712395--26712438	20	2.3	19	80	7	52	29	13	0	56	1.38
26717144--26717265	45	2.7	44	82	9	133	42	16	18	22	1.89
26717228--26717355	45	2.8	46	87	6	183	36	17	23	22	1.94
26717189--26717387	45	4.4	44	79	11	165	39	15	22	23	1.92
26717189--26717403	90	2.4	90	78	7	215	39	16	21	22	1.92
26717381--26717488	45	2.4	45	81	4	119	42	17	22	17	1.89
26719506--26719608	54	1.9	54	85	0	143	27	21	24	27	1.99
26721332--26721371	13	3.2	13	89	3	55	65	17	5	12	1.44
26729181--26729294	25	4.7	24	72	12	99	25	22	19	32	1.97
26729663--26729698	17	2.1	18	90	10	58	30	11	30	27	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26734912--26734941	14	2.1	14	93	0	51	26	3	26	43	1.70
26737005--26737149	38	3.8	38	82	0	155	13	19	28	37	1.90
26737004--26737154	76	2.0	76	84	0	194	13	19	29	37	1.91
26744156--26744234	38	2.1	38	85	0	104	12	20	27	39	1.89
26747032--26747090	31	1.9	31	85	0	82	42	11	6	38	1.68
26747620--26747688	31	2.2	31	86	0	102	34	15	10	39	1.82
26753609--26753634	7	3.7	7	100	0	52	26	15	0	57	1.38
26756276--26756396	63	1.9	63	91	0	197	42	14	12	30	1.82
26757569--26757610	9	4.7	9	82	8	50	76	7	14	2	1.10
26765948--26765987	5	8.0	5	100	0	80	80	0	0	20	0.72
26770875--26770911	19	1.9	19	100	0	74	32	0	35	32	1.58
26774067--26774149	37	2.2	37	82	2	103	28	15	22	32	1.95
26774083--26774164	37	2.2	37	86	0	119	29	14	17	39	1.89
26784831--26784895	26	2.4	26	84	7	76	55	32	1	10	1.44
26796214--26796335	61	2.0	61	98	0	235	28	10	14	45	1.78
26806111--26806248	50	2.6	53	79	10	156	26	21	28	24	1.99
26806541--26806579	20	2.0	20	90	10	62	56	5	23	15	1.59
26808590--26808635	20	2.3	20	92	0	74	60	2	21	15	1.45
26809726--26809862	71	1.9	71	89	2	213	43	8	17	30	1.79
26810323--26810440	50	2.4	50	82	0	137	29	24	26	19	1.98
26810710--26810748	20	2.0	20	90	10	62	56	5	23	15	1.59
26817597--26817762	49	3.4	49	77	5	208	33	20	21	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26817543--26817774	99	2.3	99	100	0	464	31	20	23	24	1.98
26817975--26818020	20	2.3	20	92	0	74	60	2	21	15	1.45
26819396--26819442	20	2.4	19	82	7	58	23	0	2	74	0.93
26819400--26819468	32	2.2	32	82	10	79	21	2	4	71	1.17
26838829--26838858	16	1.9	16	93	6	53	40	13	36	10	1.78
26842722--26842757	15	2.3	16	90	4	56	55	0	0	44	0.99
26843278--26843330	22	2.4	22	79	17	56	43	1	3	50	1.30
26844009--26844041	18	1.9	18	88	11	52	51	0	0	48	1.00
26856450--26856517	32	2.1	33	88	2	102	20	23	13	42	1.87
26858529--26858582	16	3.4	16	89	2	83	40	7	22	29	1.81
26858565--26858656	44	2.1	44	88	8	134	34	4	23	36	1.75
26858812--26858847	18	2.0	18	94	0	63	63	0	0	36	0.94
26860249--26860326	38	2.0	39	92	2	131	47	19	16	16	1.83
26863679--26863725	9	5.3	9	87	2	51	34	4	0	61	1.15
26864550--26864588	16	2.4	17	91	4	62	28	7	2	61	1.37
26864610--26864662	24	2.2	24	86	3	70	24	3	3	67	1.23
26864646--26864743	17	5.7	16	67	17	54	32	2	2	63	1.17
26864610--26864676	25	2.7	24	79	4	62	28	2	2	65	1.22
26867370--26867418	3	16.3	3	85	8	64	61	0	4	34	1.15
26867427--26867497	30	2.4	29	90	6	108	47	2	23	25	1.65
26868397--26868431	17	2.1	17	100	0	70	5	11	22	60	1.52
26880796--26880892	44	2.2	44	98	0	185	27	28	13	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26880648--26880987	175	1.9	175	97	0	644	30	26	15	27	1.96
26880970--26881312	44	7.8	44	69	10	225	27	24	18	30	1.98
26880915--26881368	132	3.4	132	97	0	827	28	24	17	29	1.97
26880907--26881362	44	10.4	45	66	16	152	28	23	18	29	1.98
26882565--26882603	7	5.6	7	85	11	53	15	12	0	71	1.14
26885308--26885399	48	1.9	48	88	0	139	19	22	11	45	1.83
26885498--26885543	19	2.4	19	85	7	58	45	8	21	23	1.80
26885966--26886001	17	2.1	17	89	0	54	41	19	19	19	1.90
26887360--26887391	7	4.4	7	96	4	55	53	0	12	34	1.39
26887554--26887602	3	16.3	3	85	8	64	61	0	4	34	1.15
26887944--26888070	64	2.0	63	95	3	229	51	16	4	27	1.64
26890209--26890233	13	1.9	13	100	0	50	16	0	24	60	1.36
26899451--26899486	18	2.0	18	94	0	63	63	0	0	36	0.94
26902159--26902196	15	2.5	15	91	0	58	10	31	21	36	1.87
26905001--26905029	13	2.2	13	100	0	58	20	55	0	24	1.44
26909387--26909440	26	2.1	26	100	0	108	33	24	0	42	1.55
26909452--26909520	15	4.6	15	81	0	75	30	23	7	39	1.82
26915525--26915882	71	5.0	71	80	4	364	31	22	22	24	1.98
26915525--26915825	36	8.5	36	70	7	177	31	21	22	23	1.98
26915528--26915882	142	2.5	142	85	1	451	31	22	22	23	1.98
26919368--26919472	54	1.9	54	82	0	129	24	30	21	22	1.99
26922858--26922914	28	2.0	28	93	6	98	36	17	17	28	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26930110--26930336	42	5.5	42	85	4	257	29	18	23	28	1.98
26935904--26935973	15	4.5	15	75	8	52	30	22	2	44	1.67
26939810--26939849	20	2.0	20	85	0	53	45	2	2	50	1.28
26941859--26941938	29	2.6	31	74	7	83	21	10	15	53	1.70
26943184--26943219	16	2.1	16	90	10	54	44	0	0	55	0.99
26948393--26948920	95	5.6	95	84	0	637	31	17	13	37	1.89
26948393--26948953	284	2.0	284	83	1	721	31	17	13	37	1.89
26948864--26949176	131	2.4	131	82	0	383	31	15	13	38	1.86
26955100--26955126	2	13.5	2	100	0	54	48	0	51	0	1.00
26963085--26963136	20	2.6	19	84	6	68	82	3	13	0	0.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144