genome.fa.s11.2.7.7.80.10.50.1000.64.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  64  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19416272--19416767	69	7.2	69	71	8	319	39	21	5	34	1.76
19416569--19416871	138	2.2	138	88	0	444	38	21	5	33	1.78
19416591--19416816	69	3.3	68	70	14	185	38	22	4	34	1.76
19428143--19428183	3	14.0	3	85	14	59	65	0	0	34	0.93
19429233--19429269	13	2.8	14	88	8	51	2	0	10	86	0.67
19429233--19429269	19	1.9	19	94	0	65	2	0	10	86	0.67
19439501--19439545	24	1.9	23	82	13	56	26	2	8	62	1.37
19439565--19439628	16	4.0	16	91	0	74	32	1	35	29	1.67
19439586--19439634	16	3.1	16	90	0	71	36	4	34	24	1.75
19440115--19440158	22	2.1	20	87	8	61	63	4	2	29	1.26
19448801--19448829	14	2.1	14	100	0	58	34	0	34	31	1.58
19450784--19450831	23	2.1	23	96	0	87	50	12	14	22	1.77
19453371--19453411	15	2.7	15	85	14	57	63	4	0	31	1.15
19455552--19455590	20	2.0	20	90	10	62	15	23	5	56	1.59
19455792--19456668	56	15.7	56	99	0	1745	30	26	16	26	1.97
19458638--19458742	43	2.4	43	83	1	129	32	22	16	28	1.96
19458860--19459035	31	5.7	31	83	4	205	44	15	8	30	1.77
19458860--19459036	61	2.9	61	83	4	230	45	15	8	30	1.76
19458866--19459056	62	3.1	62	79	3	206	45	14	7	32	1.74
19460306--19460351	19	2.4	19	88	0	74	50	15	2	32	1.56
19461234--19461372	63	2.2	63	87	7	194	38	20	15	25	1.92
19467796--19468168	76	4.9	76	89	2	509	31	21	21	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19468325--19468362	18	2.2	18	85	4	51	63	10	0	26	1.27
19472888--19472941	27	2.0	27	96	0	99	35	3	12	48	1.60
19473105--19473239	40	3.5	40	66	15	111	26	22	17	32	1.97
19473067--19473281	76	2.8	75	78	7	245	26	22	20	31	1.98
19473408--19473455	24	2.0	24	87	0	69	52	8	22	16	1.71
19478410--19478551	76	1.9	76	90	0	230	21	19	21	38	1.94
19478415--19478577	40	4.2	40	81	6	199	22	19	22	36	1.95
19495076--19495234	42	3.7	42	73	13	155	24	18	26	30	1.98
19495532--19495576	17	2.6	18	76	16	51	44	0	20	35	1.51
19499013--19499044	15	2.1	15	100	0	64	25	25	6	43	1.77
19502001--19502129	53	2.4	54	79	7	138	44	19	15	20	1.86
19502000--19502290	27	10.8	26	75	8	127	38	19	18	22	1.93
19501989--19502225	80	2.9	78	81	5	233	40	20	16	22	1.91
19502121--19502321	27	7.4	27	85	0	258	33	18	22	24	1.96
19502093--19502318	81	2.8	81	84	2	249	34	18	22	24	1.96
19502340--19502410	24	3.0	23	79	8	79	28	5	23	42	1.77
19502606--19502719	32	3.5	32	83	7	140	24	17	17	40	1.91
19502726--19502772	22	2.1	22	84	0	58	23	17	12	46	1.82
19509897--19509945	21	2.4	21	96	3	91	34	0	26	38	1.57
19509976--19510106	35	3.8	35	75	8	115	20	22	22	33	1.97
19515252--19515311	18	3.3	18	77	9	61	41	0	3	55	1.16
19515264--19515319	20	2.9	19	84	7	69	39	0	1	58	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19516680--19516737	9	6.4	9	82	7	73	44	22	6	25	1.77
19516679--19516737	27	2.2	27	87	0	91	45	22	6	25	1.76
19516844--19516878	18	1.9	18	100	0	70	8	0	51	40	1.33
19516845--19516892	23	2.1	23	88	0	69	10	2	45	41	1.50
19522456--19522811	44	7.6	44	68	16	216	26	22	19	31	1.98
19522735--19522830	44	2.2	44	83	3	113	26	23	21	28	1.99
19522400--19522811	142	2.9	142	92	0	680	27	22	18	31	1.97
19535215--19535263	22	2.2	22	86	13	66	71	2	4	22	1.13
19537487--19537531	20	2.1	22	84	12	58	13	11	8	66	1.44
19540951--19541017	27	2.5	27	80	4	82	20	17	28	32	1.96
19541112--19541178	27	2.5	27	85	0	71	28	19	23	28	1.98
19545242--19545293	27	1.9	27	88	0	77	26	25	23	25	2.00
19545245--19545306	27	2.3	27	82	0	70	25	25	22	25	2.00
19563138--19563249	43	2.6	43	71	20	99	25	18	29	26	1.98
19567904--19567929	13	2.0	13	100	0	52	30	15	15	38	1.88
19575064--19575110	18	2.6	18	80	12	60	19	19	0	61	1.34
19575094--19575224	12	10.9	12	71	12	63	9	19	3	67	1.35
19575140--19575198	18	3.3	18	85	0	82	5	15	8	71	1.28
19575098--19575202	12	8.6	12	75	14	72	6	18	4	70	1.27
19575098--19575202	6	17.2	6	68	5	59	6	18	4	70	1.27
19576134--19576200	32	2.2	28	80	12	71	8	8	5	76	1.17
19581236--19581315	28	2.9	28	79	7	99	30	25	20	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19581692--19581871	27	6.7	27	81	6	197	18	17	20	43	1.88
19581692--19581871	54	3.4	54	84	4	231	18	17	20	43	1.88
19581720--19581870	80	1.9	80	84	5	207	16	17	20	45	1.86
19584528--19584612	28	3.0	27	84	3	98	28	22	22	27	1.99
19585267--19585530	25	11.2	23	70	19	163	45	16	12	26	1.82
19585247--19585530	47	6.0	47	92	2	419	44	16	12	26	1.84
19598170--19598243	25	3.1	25	72	18	75	43	14	13	28	1.84
19598960--19599017	29	2.0	29	96	0	107	34	15	13	36	1.87
19599220--19599318	28	3.6	27	80	11	103	28	27	13	31	1.94
19600702--19601034	27	12.3	27	83	3	348	18	18	19	43	1.88
19605619--19605771	44	3.4	43	78	8	144	11	26	5	56	1.57
19618034--19618159	28	4.5	28	66	19	75	30	16	23	28	1.96
19622566--19622599	11	3.1	11	84	16	52	2	14	0	82	0.79
19623275--19623344	26	2.6	27	90	4	115	40	8	0	51	1.33
19623412--19623478	27	2.5	27	95	0	116	28	29	26	14	1.96
19623511--19623656	4	36.0	4	70	16	79	67	0	32	0	0.91
19623508--19623604	34	2.9	33	77	18	96	63	0	36	0	0.94
19623551--19623689	48	2.9	48	79	6	138	70	0	29	0	0.88
19623550--19623698	27	5.6	29	74	13	126	69	0	30	0	0.89
19623558--19623722	82	2.0	84	87	9	239	69	0	30	0	0.88
19623579--19623663	33	2.6	32	78	10	82	70	0	29	0	0.87
19623640--19623725	34	2.5	33	77	22	90	68	0	31	0	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19630078--19630102	12	2.1	12	100	0	50	68	16	0	16	1.22
19630084--19630168	36	2.4	35	92	3	136	54	12	0	32	1.39
19630321--19630346	3	8.7	3	100	0	52	69	30	0	0	0.89
19630345--19630382	3	12.3	3	88	5	58	63	5	0	31	1.17
19630428--19630466	20	2.0	21	85	10	55	66	10	0	23	1.22
19630493--19630529	11	3.5	11	88	7	58	0	29	0	70	0.88
19630610--19630676	27	2.5	27	90	0	107	17	29	29	22	1.97
19630733--19630804	26	2.7	27	91	4	110	50	0	6	43	1.29
19644583--19644896	146	2.1	149	85	5	431	43	11	4	40	1.60
19644758--19645027	131	2.1	128	94	2	468	46	8	4	40	1.56
19645330--19645377	3	15.7	3	82	4	60	60	2	0	37	1.09
19645318--19645372	28	2.0	28	89	7	85	60	1	1	36	1.18
19647798--19647849	7	7.4	7	100	0	104	28	0	0	71	0.87
19650675--19650761	29	3.0	29	91	0	138	37	12	31	18	1.88
19650680--19650772	29	3.2	29	86	6	118	37	13	27	20	1.91
19652191--19652258	23	3.0	22	84	4	73	26	26	14	32	1.95
19652214--19652259	23	2.0	23	91	0	74	28	26	13	32	1.93
19652435--19652483	20	2.5	20	79	0	53	34	6	22	36	1.79
19652715--19653478	382	2.0	382	99	0	1510	27	10	20	40	1.85
19660027--19660069	21	2.1	21	91	4	70	46	9	2	41	1.48
19679354--19679407	27	2.0	27	96	0	99	57	9	0	33	1.31
19679465--19679531	27	2.5	27	87	0	98	29	29	23	16	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19679573--19679710	4	34.0	4	75	15	99	68	0	31	0	0.90
19679594--19679737	33	4.3	33	75	13	125	68	0	31	0	0.90
19679592--19679779	70	2.8	69	80	13	189	68	0	30	0	0.94
19679570--19679745	70	2.6	69	84	10	202	67	0	31	0	0.95
19679573--19679716	29	4.8	29	70	19	98	68	0	31	0	0.90
19679656--19679745	29	3.0	29	79	9	92	72	0	26	1	0.92
19686252--19686288	12	3.1	12	92	0	56	62	16	0	21	1.33
19686474--19686529	3	18.7	3	100	0	112	67	32	0	0	0.91
19686590--19686628	20	2.0	21	85	10	55	66	10	0	23	1.22
19686773--19686848	27	2.8	28	86	7	104	18	28	27	25	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144