genome.fa.s11.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  113  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34967835--34967876	21	2.0	21	90	0	66	4	54	16	23	1.61
34981688--34981718	15	2.1	15	93	0	53	32	9	0	58	1.31
34981751--34981792	22	1.9	22	90	0	66	40	33	7	19	1.78
34982087--34982138	25	2.1	25	96	0	95	42	21	7	28	1.80
34982297--34982372	39	2.0	38	85	7	102	40	23	5	30	1.77
34982550--34982784	41	5.8	41	86	4	298	18	22	22	36	1.95
34999061--34999102	18	2.3	19	80	12	52	76	0	7	16	1.00
34999070--34999103	6	5.7	6	85	0	50	76	0	5	17	0.98
35005583--35005621	20	2.0	20	85	10	53	7	28	5	58	1.47
35016097--35016158	31	2.0	32	96	3	117	50	14	3	32	1.59
35016999--35017033	16	2.2	16	90	5	54	25	8	0	65	1.21
35025922--35025947	12	2.2	12	100	0	52	7	23	42	26	1.81
35027002--35027184	40	4.5	40	81	2	215	33	27	14	24	1.94
35031913--35032044	40	3.3	40	86	2	176	26	28	21	23	1.99
35032029--35032106	40	1.9	41	82	10	97	26	28	21	23	1.99
35041507--35041769	40	6.6	40	88	3	325	26	27	20	25	1.99
35041701--35041778	40	1.9	41	82	10	97	26	28	21	23	1.99
35046854--35047041	40	4.7	40	83	2	216	34	26	14	25	1.94
35059676--35059789	18	6.3	18	79	8	97	35	13	13	38	1.83
35059690--35059799	54	2.0	54	85	3	150	33	14	13	38	1.86
35066350--35066525	46	3.8	46	79	12	216	20	21	29	28	1.98
35066347--35066518	93	1.8	93	96	0	317	20	21	29	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35068182--35068234	15	3.5	15	100	0	106	13	32	47	7	1.70
35068182--35068241	15	4.1	14	93	4	77	11	33	46	8	1.70
35087259--35087328	30	2.3	30	80	9	81	24	28	28	18	1.98
35092541--35092721	79	2.3	80	82	8	217	25	28	22	24	1.99
35092520--35092723	40	5.1	40	81	8	229	25	27	22	24	1.99
35097729--35097868	42	3.3	43	74	8	108	28	17	24	30	1.97
35103645--35103703	26	2.2	27	87	3	84	32	23	13	30	1.93
35109983--35110110	28	4.6	28	98	0	238	25	14	28	30	1.95
35119759--35119812	28	1.9	28	96	0	99	25	12	27	33	1.93
35122412--35122460	22	2.2	22	82	10	55	30	24	10	34	1.89
35123565--35123699	71	1.9	73	84	6	186	54	9	5	30	1.57
35124210--35124242	17	1.9	17	93	0	57	57	0	6	36	1.23
35124238--35124285	24	2.1	22	85	14	62	64	2	4	29	1.23
35127383--35127494	27	4.2	26	85	7	143	16	24	23	36	1.94
35127383--35127494	54	2.1	54	89	3	172	16	24	23	36	1.94
35145780--35146782	501	2.0	501	99	0	1997	29	18	19	32	1.96
35150992--35151037	20	2.3	20	92	0	74	6	21	28	43	1.77
35162030--35162205	41	4.3	40	76	12	144	33	25	15	25	1.95
35162113--35162205	40	2.3	40	83	7	127	34	26	15	23	1.94
35162615--35162680	29	2.3	29	81	5	71	30	24	3	42	1.70
35164783--35164844	22	2.9	22	76	11	65	43	8	1	46	1.42
35165834--35165879	24	1.9	24	81	0	56	67	2	2	28	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35167393--35167421	14	2.1	14	100	0	58	34	6	20	37	1.80
35172479--35172551	26	2.8	26	80	17	82	23	0	0	76	0.78
35172478--35172550	5	15.8	5	77	11	68	23	0	0	76	0.78
35172574--35172602	15	1.9	15	100	0	58	20	3	6	68	1.27
35172690--35172754	21	3.1	21	83	12	73	23	6	1	69	1.20
35172848--35172881	14	2.4	14	85	5	50	26	0	2	70	1.01
35175519--35175567	25	2.0	24	96	4	89	40	26	8	24	1.83
35180424--35180492	20	3.8	18	78	14	63	63	1	4	30	1.22
35180578--35180635	20	2.8	20	75	12	64	63	0	5	31	1.16
35187685--35187869	79	2.3	81	83	9	229	24	22	27	25	2.00
35187686--35187888	40	5.1	39	80	11	191	25	22	27	24	2.00
35187738--35187902	79	2.1	79	83	8	203	26	21	26	25	1.99
35195425--35195684	79	3.3	79	80	6	244	25	21	26	26	1.99
35195425--35195649	40	5.7	40	83	5	269	24	21	27	26	1.99
35203232--35203489	79	3.3	79	84	5	256	25	20	27	25	1.99
35203232--35203456	40	5.7	40	84	5	278	24	21	27	26	1.99
35211350--35211466	48	2.4	48	98	0	225	34	8	28	29	1.87
35211639--35211741	37	2.8	37	92	0	170	23	20	31	25	1.98
35215061--35215325	81	3.3	81	91	0	413	29	22	8	40	1.83
35215061--35215325	27	9.8	27	92	0	368	29	22	8	40	1.83
35215277--35215663	27	14.3	27	77	7	225	39	20	8	32	1.82
35215304--35215550	54	4.6	53	81	6	264	40	21	7	29	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35215318--35215552	81	2.9	79	85	5	292	41	21	7	29	1.80
35215694--35215785	27	3.4	27	89	3	123	32	19	28	19	1.96
35216593--35216662	25	2.8	25	82	0	86	27	22	21	28	1.99
35216643--35216689	25	2.0	24	83	8	60	29	21	23	25	1.99
35220344--35220405	30	2.1	30	87	0	88	37	8	24	30	1.84
35223994--35224136	48	3.0	48	88	0	223	31	29	18	20	1.96
35225612--35225678	33	2.0	33	91	0	107	25	23	16	34	1.95
35232845--35233050	46	4.4	46	77	14	197	27	20	28	23	1.99
35232836--35233108	140	1.9	139	83	4	343	27	20	27	23	1.99
35235480--35235741	80	3.3	80	85	2	341	27	21	25	25	1.99
35235480--35235743	120	2.2	120	84	3	327	27	21	25	25	1.99
35235480--35235707	40	5.7	40	88	2	332	25	21	26	26	2.00
35249027--35249255	40	5.7	40	94	0	395	26	20	27	26	1.99
35253558--35254638	48	22.5	48	98	0	2027	33	6	28	31	1.82
35254779--35254881	37	2.8	37	95	0	179	24	20	32	23	1.98
35269418--35269447	15	2.0	15	93	0	51	30	3	40	26	1.72
35270494--35270558	33	2.0	32	96	0	112	30	9	35	23	1.86
35284760--35284898	48	2.9	48	82	0	170	30	25	18	24	1.98
35286509--35286546	9	4.1	9	86	6	58	84	0	10	5	0.77
35288764--35288797	13	2.5	14	90	4	52	64	2	32	0	1.08
35295250--35295321	33	2.1	34	82	7	85	31	25	18	25	1.97
35298249--35298306	23	2.5	23	91	0	89	39	17	20	22	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35298300--35298354	27	2.0	27	82	6	67	36	23	21	18	1.95
35299952--35299995	13	3.3	13	81	12	54	54	15	13	15	1.71
35302084--35302135	25	2.1	25	96	0	95	42	21	3	32	1.71
35302088--35302145	25	2.4	25	88	2	82	46	17	3	32	1.65
35306390--35306577	100	1.9	100	94	0	331	26	19	25	29	1.98
35306395--35306582	49	3.8	49	81	2	232	27	18	25	29	1.98
35308730--35308838	55	2.0	55	98	0	209	44	18	7	30	1.77
35309777--35309997	40	5.5	40	90	4	356	30	27	19	22	1.98
35309777--35309991	80	2.7	80	100	0	430	30	26	20	22	1.98
35311383--35311408	13	2.0	13	100	0	52	61	7	0	30	1.24
35318019--35318160	40	3.5	40	95	0	248	29	27	21	21	1.98
35325222--35325444	39	5.7	40	86	7	273	25	22	27	24	2.00
35325222--35325444	79	2.8	81	85	8	282	25	22	27	24	2.00
35325222--35325477	79	3.3	79	82	9	224	26	21	27	24	1.99
35330379--35330471	45	2.1	45	89	4	143	29	19	21	30	1.97
35333374--35333398	7	3.6	7	100	0	50	32	0	24	44	1.54
35369647--35369941	39	7.5	39	84	4	362	23	26	22	27	2.00
35369647--35369941	79	3.7	79	95	2	515	23	26	22	27	2.00
35370214--35370460	123	2.0	123	98	0	476	38	15	14	30	1.88
35388744--35388872	26	4.9	27	69	11	97	34	14	28	21	1.93
35388744--35388874	52	2.5	52	81	2	154	34	15	29	21	1.94
35391207--35391239	16	2.1	16	100	0	66	24	12	24	39	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35392843--35393037	29	6.8	29	78	8	182	33	22	14	29	1.94
35392836--35392908	28	2.5	29	84	8	87	35	20	13	30	1.91
35392845--35393037	87	2.2	86	80	8	214	34	22	15	28	1.94
35393010--35393080	26	2.7	26	84	0	97	40	23	18	16	1.90
35396299--35396476	27	6.6	27	84	3	205	26	14	28	29	1.95
35396300--35396455	82	1.9	81	88	3	233	26	14	28	29	1.95
35396296--35396476	82	2.2	81	83	2	229	27	14	28	29	1.96
35403793--35403825	15	2.3	14	94	5	57	6	18	27	48	1.71
35404291--35404345	21	2.5	22	78	18	62	67	5	5	21	1.32
35410241--35410277	15	2.5	15	95	0	65	35	27	27	10	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144