genome.fa.s11.2.7.7.80.10.50.1000.63.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  63  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19106291--19106328	18	2.1	18	100	0	76	31	26	15	26	1.96
19106309--19106442	43	3.1	43	84	2	171	33	24	16	25	1.96
19116296--19116325	4	7.5	4	92	0	51	23	3	0	73	0.98
19116387--19116436	26	2.0	25	92	7	84	44	8	0	48	1.32
19116433--19116465	16	2.1	16	94	0	57	87	3	0	9	0.63
19116425--19116479	18	3.1	18	78	7	58	81	7	1	9	0.93
19116519--19116585	27	2.5	27	92	0	107	20	28	34	16	1.95
19116632--19116802	18	9.8	17	69	17	70	64	1	33	0	1.05
19116634--19116784	10	15.1	10	69	15	53	66	1	31	0	1.04
19116652--19116809	38	4.3	38	78	14	154	66	1	31	0	1.04
19118728--19118763	17	2.1	17	100	0	72	30	16	5	47	1.70
19119730--19119758	14	2.1	14	100	0	58	37	6	0	55	1.27
19122254--19122291	18	2.1	18	95	0	67	18	42	5	34	1.73
19122257--19122298	18	2.3	18	87	0	66	23	45	2	28	1.66
19123176--19123334	81	2.0	81	97	2	304	30	18	0	50	1.47
19123440--19123508	27	2.6	27	83	0	84	18	30	27	23	1.98
19123750--19123780	3	10.0	3	93	6	53	32	0	0	67	0.91
19123750--19123790	9	4.2	10	90	6	50	26	4	0	68	1.10
19123993--19124026	17	1.9	18	88	5	52	44	2	2	50	1.32
19123995--19124051	29	2.0	29	86	6	80	45	1	1	50	1.22
19124015--19124053	20	2.0	20	89	0	60	48	0	0	51	1.00
19127104--19127537	225	1.9	225	98	0	832	36	19	12	30	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19128206--19128246	21	2.0	20	85	4	55	43	21	14	19	1.87
19131537--19131595	20	2.7	20	80	15	64	49	6	3	40	1.46
19132501--19132526	13	2.0	13	100	0	52	53	0	7	38	1.30
19143635--19143671	17	2.2	17	90	0	56	48	10	0	40	1.38
19143877--19143952	23	3.3	23	90	0	116	39	22	18	19	1.92
19144182--19144246	21	3.0	22	80	8	89	36	24	18	20	1.94
19151289--19151565	151	1.8	151	87	0	410	24	18	29	27	1.98
19162608--19162793	50	3.8	50	81	5	209	20	33	20	25	1.97
19162608--19162806	97	2.0	97	80	6	222	21	33	20	25	1.97
19172016--19172201	50	3.8	50	81	5	209	20	33	20	25	1.97
19172016--19172214	97	2.0	97	80	6	222	21	33	20	25	1.97
19177157--19177377	89	2.5	89	89	0	343	24	25	23	26	2.00
19177173--19177318	44	3.3	44	66	19	113	23	25	23	27	2.00
19177393--19177644	44	5.8	42	77	9	202	28	19	18	33	1.96
19177474--19177641	87	1.9	88	86	1	239	29	19	17	33	1.95
19177404--19177684	131	2.1	132	87	3	397	28	18	19	33	1.95
19178103--19178238	72	1.9	72	83	3	175	27	25	14	33	1.95
19178175--19178278	51	2.0	51	88	0	154	26	24	18	30	1.98
19178618--19178675	24	2.4	24	97	0	107	29	24	12	34	1.91
19192669--19192844	37	4.8	37	96	0	298	39	13	21	26	1.90
19192807--19192930	46	2.8	46	91	3	200	33	16	22	27	1.96
19199572--19199653	30	2.7	30	86	0	101	47	6	18	28	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19199808--19199854	2	23.5	2	100	0	94	0	48	0	51	1.00
19203599--19204094	248	2.0	248	99	0	974	30	16	24	28	1.96
19207068--19207101	15	2.1	17	89	10	54	55	2	26	14	1.53
19210151--19210223	12	6.1	12	70	17	53	15	23	0	61	1.33
19211673--19211706	15	2.1	17	89	10	54	55	2	26	14	1.53
19213561--19213612	18	2.9	18	97	0	95	53	5	13	26	1.62
19215750--19215801	20	2.6	19	81	6	59	34	0	1	63	1.06
19215928--19215956	2	14.5	2	100	0	58	48	0	0	51	1.00
19217215--19217261	14	3.4	14	82	5	51	25	6	8	59	1.50
19227281--19227321	21	1.9	22	85	5	57	39	2	0	58	1.11
19238917--19239572	323	2.0	322	86	1	909	27	12	25	34	1.91
19240464--19240529	28	2.3	28	81	2	78	22	18	18	40	1.91
19241580--19241654	39	1.9	39	97	0	141	32	6	8	53	1.56
19246694--19246734	14	3.0	13	86	10	55	60	0	0	39	0.96
19247132--19247268	40	3.4	39	82	4	159	35	23	21	19	1.96
19247306--19247516	41	5.3	41	82	8	249	22	20	25	31	1.98
19247407--19247510	35	2.8	35	84	8	109	25	21	25	28	1.99
19247851--19247894	20	2.1	21	91	4	72	27	0	25	47	1.52
19247943--19248013	14	5.1	14	77	14	58	26	1	33	38	1.65
19248133--19248189	7	8.7	7	79	11	50	14	1	50	33	1.52
19248137--19248185	6	7.8	6	81	6	53	12	2	53	32	1.50
19248075--19248262	101	1.9	101	93	0	322	23	0	32	43	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19249807--19249870	30	2.1	30	100	0	128	12	12	15	59	1.61
19252503--19252529	5	5.4	5	100	0	54	18	0	0	81	0.69
19254150--19254264	43	2.7	43	84	0	140	26	20	27	26	1.99
19254216--19254400	43	4.0	50	77	15	148	21	15	33	29	1.94
19254266--19254416	43	3.5	44	88	3	218	19	15	33	31	1.93
19254673--19254710	3	12.7	3	100	0	76	68	0	31	0	0.90
19255490--19255565	24	3.0	24	70	10	71	32	32	14	19	1.92
19259528--19259559	14	2.3	14	94	0	55	15	3	59	21	1.50
19271702--19271752	24	2.1	24	85	0	66	29	3	11	54	1.54
19282056--19282188	56	2.4	56	93	0	221	29	11	19	39	1.86
19282056--19282191	28	4.9	28	67	15	93	28	11	19	40	1.86
19285881--19285934	22	2.5	22	82	5	67	59	0	1	38	1.08
19288842--19288896	25	2.2	26	80	9	69	60	1	1	36	1.18
19289611--19289652	22	2.0	22	86	13	63	54	0	0	45	0.99
19289614--19289647	16	2.2	15	89	5	50	55	0	0	44	0.99
19292263--19292299	15	2.5	15	90	0	56	56	5	2	35	1.36
19294028--19294136	42	2.6	42	82	4	121	30	27	17	24	1.97
19300585--19300641	27	2.1	28	87	9	82	38	0	1	59	1.08
19300603--19300637	11	3.2	11	87	0	52	40	0	0	60	0.97
19302050--19302090	18	2.3	18	100	0	82	58	19	9	12	1.61
19311932--19312063	67	2.0	67	93	0	228	21	18	31	28	1.97
19313091--19313135	23	2.0	23	82	4	56	44	15	8	31	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19313118--19313199	27	3.0	28	92	3	139	31	17	17	34	1.93
19313131--19313208	14	5.6	14	66	3	59	33	16	16	33	1.92
19325793--19325831	16	2.4	16	82	0	51	56	2	2	38	1.27
19330721--19330923	46	4.3	48	88	7	265	35	14	21	28	1.92
19330655--19330923	98	2.7	98	93	0	457	34	14	22	28	1.93
19330887--19331032	37	4.0	37	93	1	242	36	16	21	24	1.94
19341115--19341359	50	4.8	50	82	3	258	26	20	28	24	1.99
19344719--19344788	27	2.6	27	80	8	72	37	22	27	12	1.91
19351579--19351603	13	1.9	13	100	0	50	48	20	8	24	1.76
19351789--19351919	41	3.2	41	84	4	131	29	22	19	29	1.98
19353229--19353278	25	2.0	24	85	11	66	46	2	0	52	1.12
19353247--19353293	21	2.2	21	77	7	51	51	4	0	44	1.21
19355447--19355586	65	2.2	63	84	8	194	40	4	5	50	1.44
19356845--19356884	8	5.5	8	77	22	52	0	37	0	62	0.95
19356845--19356884	14	2.9	14	92	0	71	0	37	0	62	0.95
19358843--19358887	20	2.1	22	84	8	58	35	22	24	17	1.95
19362942--19362988	24	2.0	23	87	4	67	72	10	6	10	1.28
19364971--19365019	2	24.5	2	100	0	98	0	51	0	48	1.00
19366000--19366042	23	1.9	23	85	4	61	69	4	2	23	1.18
19367027--19367055	13	2.1	14	93	6	51	31	0	0	68	0.89
19368531--19368613	24	3.5	24	75	6	80	59	4	2	33	1.32
19372555--19372608	24	2.2	24	86	0	72	37	3	5	53	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19376560--19376597	14	2.7	14	91	0	58	36	10	7	44	1.68
19377226--19377261	18	2.1	17	94	5	63	38	0	16	44	1.48
19398560--19398594	15	2.2	16	90	5	54	68	0	31	0	0.90
19400294--19400324	3	10.3	3	100	0	62	35	0	0	64	0.94
19408521--19408548	9	3.1	9	100	0	56	46	10	10	32	1.73
19410039--19410080	20	2.1	20	86	0	57	47	0	7	45	1.30
19411480--19411509	11	2.7	11	89	0	51	33	0	0	66	0.92
19416251--19416819	46	12.4	46	73	3	385	38	22	5	33	1.78
19416272--19416767	23	21.6	23	70	8	249	39	21	5	34	1.76
19416251--19416582	138	2.4	137	86	0	466	39	22	5	32	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144