genome.fa.s11.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  111  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34331003--34331078	24	3.0	25	79	9	75	52	1	2	43	1.23
34332175--34332200	2	13.0	2	100	0	52	50	50	0	0	1.00
34343616--34344197	302	1.9	301	96	1	1085	28	20	15	34	1.94
34348738--34348780	22	2.0	22	100	0	86	51	9	0	39	1.34
34361233--34361293	30	2.0	30	83	0	77	31	22	8	37	1.84
34370575--34370631	30	1.9	30	89	7	89	24	33	26	15	1.95
34372368--34372524	43	3.7	42	76	6	147	27	14	26	32	1.94
34373581--34374078	120	4.2	120	100	0	996	21	26	26	24	1.99
34373706--34374011	53	5.2	53	64	22	157	21	27	26	24	1.99
34374317--34374414	51	1.9	50	81	2	115	50	11	11	27	1.72
34374474--34374707	84	2.7	84	85	4	297	45	9	10	34	1.71
34374710--34374875	79	2.1	79	86	6	230	40	12	15	32	1.83
34382682--34382744	23	2.7	23	92	0	108	42	33	6	17	1.74
34382682--34382802	23	4.8	23	77	16	98	45	33	4	16	1.69
34382719--34382802	28	3.0	28	89	1	123	46	32	3	17	1.66
34393187--34393320	29	4.6	29	74	11	130	42	20	11	25	1.85
34397801--34397850	21	2.5	20	86	3	64	28	22	12	38	1.89
34397814--34397875	21	3.0	21	83	4	63	20	24	14	40	1.90
34405677--34405746	13	5.5	13	74	16	65	37	2	1	58	1.22
34405941--34405967	13	2.1	13	100	0	54	62	7	0	29	1.22
34414123--34414156	16	2.1	16	94	0	59	35	5	29	29	1.81
34420146--34420181	17	2.1	17	94	0	63	22	19	5	52	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34427677--34427772	25	3.8	25	75	14	65	30	11	1	57	1.41
34427709--34427773	27	2.5	25	80	11	76	33	13	0	52	1.41
34427791--34427847	26	2.1	26	87	6	78	35	0	0	64	0.93
34427921--34428016	26	3.6	26	76	13	63	32	5	4	58	1.39
34444679--34444856	27	6.6	27	84	3	205	29	28	15	26	1.96
34444700--34444855	82	1.9	81	88	3	233	29	28	15	26	1.96
34454721--34454886	54	3.1	54	91	0	260	38	3	5	53	1.40
34454791--34454840	18	2.6	19	78	9	57	42	0	6	52	1.26
34455930--34455975	21	2.0	21	84	12	56	50	6	6	36	1.54
34456114--34456323	105	2.0	105	90	3	334	42	14	10	32	1.79
34461261--34461320	30	2.0	30	93	0	102	50	6	15	28	1.69
34462725--34462802	41	1.9	41	97	0	147	34	2	21	41	1.67
34469146--34469198	22	2.5	20	77	19	54	37	0	0	62	0.96
34469161--34469204	21	2.0	22	91	4	72	36	0	0	63	0.95
34470441--34470502	20	3.1	20	83	0	79	48	22	22	6	1.73
34475021--34475125	39	2.6	39	86	5	122	24	22	27	24	2.00
34474981--34475144	40	4.1	40	80	12	169	25	23	27	24	2.00
34474981--34475131	79	1.9	80	82	6	191	25	23	27	23	2.00
34482964--34483145	28	6.5	28	94	1	294	26	11	28	34	1.91
34490596--34490633	18	2.1	18	100	0	76	44	5	5	44	1.49
34492317--34492381	24	2.9	22	70	17	60	20	18	20	41	1.91
34496473--34496535	9	7.1	9	76	16	60	28	1	1	68	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34496444--34496523	19	4.3	18	77	6	70	26	3	2	67	1.20
34496494--34496534	7	6.1	7	77	11	50	29	0	2	68	1.03
34496476--34496527	19	2.8	20	88	8	74	26	1	1	69	1.10
34496573--34496625	21	2.4	21	87	6	70	24	1	3	69	1.15
34496570--34496636	20	3.4	19	80	11	73	23	1	2	71	1.08
34502268--34502334	31	2.1	32	83	2	82	29	10	13	46	1.76
34506994--34507063	34	2.0	35	88	2	106	50	11	1	37	1.48
34510304--34510358	27	2.0	27	96	0	101	27	21	9	41	1.83
34514901--34516277	688	2.0	688	100	0	2754	36	22	15	25	1.94
34515861--34517466	803	2.0	803	100	0	3212	32	24	15	27	1.96
34517412--34517535	47	2.6	47	79	14	148	23	28	19	29	1.98
34517366--34517535	94	1.8	91	84	10	229	24	28	18	28	1.98
34517273--34517532	139	1.9	141	80	8	309	23	28	17	29	1.97
34517742--34518206	232	2.0	232	98	0	894	30	21	13	34	1.91
34521848--34521920	33	2.2	33	92	0	119	42	31	2	23	1.68
34524157--34524435	149	1.9	150	92	0	470	35	19	12	32	1.89
34524960--34525021	21	3.0	20	86	9	81	51	1	6	40	1.37
34525254--34525292	20	1.9	21	94	5	71	38	0	25	35	1.56
34532400--34532444	19	2.4	19	96	0	81	37	17	0	44	1.49
34537756--34537919	43	3.8	42	76	9	127	25	18	24	31	1.98
34541912--34541940	14	2.1	14	100	0	58	37	0	0	62	0.96
34543646--34543699	28	1.9	28	85	14	76	61	1	9	27	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34543646--34543718	28	2.8	26	80	17	73	60	1	6	31	1.31
34543720--34543779	28	2.1	30	81	6	70	41	1	11	45	1.50
34546845--34546901	25	2.3	25	84	0	69	42	28	8	21	1.82
34546870--34547002	50	2.8	48	85	6	155	34	27	17	20	1.95
34546909--34547009	50	2.0	50	92	0	166	32	25	19	21	1.97
34546916--34547025	50	2.2	50	88	0	157	32	26	20	20	1.97
34546913--34547013	25	4.0	25	80	0	130	30	26	20	21	1.98
34549154--34549320	43	3.9	43	77	3	158	34	24	13	26	1.93
34550546--34550642	51	1.9	51	91	0	158	36	17	9	37	1.82
34554511--34554553	22	2.0	20	86	8	59	16	9	2	72	1.21
34558874--34558981	54	2.0	54	92	0	180	32	25	15	26	1.96
34559218--34559267	25	2.0	25	96	0	91	30	12	26	32	1.92
34563006--34563046	17	2.4	17	84	8	57	7	14	4	73	1.22
34565110--34565324	109	2.0	109	97	0	403	28	32	20	18	1.97
34572374--34572421	16	3.3	16	67	27	52	31	0	20	47	1.50
34572371--34572423	27	2.0	27	100	0	106	30	0	18	50	1.47
34576784--34576891	26	4.2	26	97	0	207	36	26	6	30	1.82
34582433--34583110	343	2.0	342	95	0	1223	34	14	15	35	1.89
34589677--34589725	14	3.8	13	76	15	57	53	0	2	44	1.12
34589669--34589722	26	2.1	24	83	13	63	53	0	3	42	1.18
34590050--34590172	13	9.3	13	75	16	71	64	0	1	34	1.04
34590055--34590172	32	3.6	31	76	13	94	64	0	1	33	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34590008--34590165	58	2.7	58	78	16	139	63	0	3	32	1.14
34590050--34590184	45	3.1	44	82	11	145	64	0	2	33	1.06
34591836--34592546	205	3.5	204	92	0	1145	28	20	18	32	1.96
34592470--34592712	88	2.8	85	87	4	324	31	24	16	27	1.96
34592477--34592765	89	3.3	87	86	4	357	29	24	16	28	1.96
34603502--34603677	46	3.8	45	81	10	212	21	21	29	28	1.98
34603498--34603669	93	1.8	93	94	0	308	20	21	30	27	1.98
34606647--34606715	15	4.6	15	83	0	84	11	17	13	57	1.64
34606638--34606725	30	3.0	30	81	8	99	10	17	15	56	1.66
34609117--34609292	46	3.8	46	79	12	216	21	21	28	28	1.98
34609114--34609284	93	1.8	93	96	0	315	21	21	28	28	1.99
34612246--34612314	15	4.6	15	83	0	84	11	17	13	57	1.64
34612237--34612324	30	3.0	30	81	8	99	10	17	15	56	1.66
34614716--34614891	46	3.8	46	80	12	225	21	21	28	28	1.98
34614713--34614883	93	1.8	93	96	0	315	21	21	29	28	1.98
34617815--34617883	15	4.6	15	83	0	84	11	17	13	57	1.64
34617806--34617893	30	3.0	30	81	8	99	10	17	15	56	1.66
34623497--34623676	92	2.0	92	87	2	263	30	12	22	35	1.90
34627234--34627282	20	2.5	20	100	0	98	44	4	4	46	1.41
34627493--34627518	13	2.0	13	100	0	52	30	46	23	0	1.53
34628704--34628751	23	2.1	23	88	0	69	33	20	29	16	1.95
34628744--34628803	26	2.3	26	82	5	77	41	21	18	18	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34636480--34636514	18	1.9	18	94	0	61	28	11	25	34	1.91
34636489--34636531	18	2.4	18	84	7	52	37	18	11	32	1.87
34639221--34639273	21	2.6	21	85	8	65	50	18	1	28	1.57
34644551--34644601	17	3.0	17	88	0	66	17	19	15	47	1.83
34644793--34644852	31	1.9	31	89	0	93	30	1	16	51	1.54
34649372--34649527	43	3.7	43	76	6	131	27	19	25	27	1.99
34656644--34656754	42	2.6	42	75	9	118	26	24	24	25	2.00
34659660--34659690	16	1.9	16	93	0	53	35	22	0	41	1.54
34659657--34659696	20	2.0	20	85	0	53	37	22	0	40	1.54
34659929--34660136	55	3.8	53	77	6	186	22	25	17	35	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144