genome.fa.s11.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  12  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2863662--2863835	52	3.3	52	88	1	249	27	23	13	36	1.92
2863618--2863841	98	2.3	98	78	9	235	27	23	13	35	1.93
2870141--2870305	49	3.2	49	80	12	145	29	19	27	23	1.98
2871515--2871648	44	3.0	45	83	4	162	35	13	23	27	1.93
2877881--2878014	44	3.0	45	83	4	162	35	13	23	27	1.93
2895519--2895548	15	2.0	15	93	0	51	36	20	16	26	1.93
2907331--2907355	12	2.1	12	100	0	50	52	0	16	32	1.44
2908173--2908220	25	1.9	25	87	8	71	64	6	2	27	1.28
2908186--2908234	25	2.0	25	83	0	62	61	8	4	26	1.42
2910307--2910340	6	5.7	6	100	0	68	17	0	0	82	0.67
2911783--2911819	6	6.2	6	96	0	65	48	13	2	35	1.57
2914801--2914830	6	5.0	6	91	0	51	16	3	0	80	0.85
2920290--2920314	2	12.5	2	100	0	50	48	0	52	0	1.00
2926344--2926440	49	2.0	49	91	0	158	37	19	7	36	1.80
2926811--2926892	37	2.2	36	83	10	103	34	4	1	59	1.26
2926793--2926891	28	3.5	28	83	5	94	32	6	2	59	1.33
2926819--2926910	19	4.9	18	72	10	69	34	4	1	59	1.24
2926883--2926932	19	2.7	19	81	6	59	46	0	0	54	1.00
2926995--2927164	91	1.9	91	83	4	227	34	8	18	39	1.80
2927161--2927203	21	2.0	21	86	4	59	53	6	4	34	1.49
2929645--2929682	12	3.0	13	85	14	53	44	0	0	55	0.99
2932736--2932804	26	2.7	26	86	4	95	18	23	21	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2934158--2934241	30	2.8	29	75	13	82	36	22	2	38	1.67
2934198--2934260	30	2.1	29	82	8	74	42	22	0	34	1.54
2934848--2934906	6	9.3	6	80	10	64	74	0	25	0	0.82
2934963--2935000	10	3.8	10	89	0	58	78	0	18	2	0.86
2935160--2935200	5	8.0	5	89	5	64	36	0	0	63	0.95
2935160--2935200	16	2.6	16	92	3	66	36	0	0	63	0.95
2935165--2935211	21	2.3	21	88	3	69	38	0	0	61	0.96
2935492--2935628	53	2.6	53	80	6	136	31	12	9	46	1.73
2935569--2935628	18	3.4	18	75	13	63	35	11	8	45	1.71
2935601--2935648	19	2.6	18	93	3	78	35	14	4	45	1.64
2935480--2935681	17	11.5	18	70	16	111	31	12	8	47	1.72
2935769--2935810	21	2.0	22	90	4	68	40	2	9	47	1.49
2935800--2935849	17	2.8	18	75	6	57	34	14	10	42	1.78
2935832--2935919	43	2.0	43	82	8	108	28	12	12	46	1.78
2935832--2935919	44	2.0	42	81	12	99	28	12	12	46	1.78
2935791--2935926	18	7.3	18	70	14	89	33	11	11	44	1.75
2946695--2946752	29	2.0	29	93	0	98	32	18	36	12	1.88
2946953--2947019	1	67.0	1	75	0	62	88	4	7	0	0.64
2946953--2947019	7	9.7	7	84	15	70	88	4	7	0	0.64
2946953--2947013	19	3.2	19	82	17	72	88	4	6	0	0.63
2946953--2947019	14	4.9	14	83	3	82	88	4	7	0	0.64
2947609--2947947	82	4.1	84	83	6	435	26	16	20	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2947609--2947947	164	2.1	165	92	1	556	26	16	20	37	1.93
2948159--2948977	76	10.6	76	90	3	1144	27	17	20	35	1.95
2949353--2949423	29	2.4	30	79	13	76	36	18	1	43	1.59
2949353--2949436	29	2.9	29	74	15	75	34	22	2	40	1.67
2949986--2950044	6	9.3	6	80	10	64	74	0	25	0	0.82
2950207--2950271	34	1.9	33	90	3	103	23	44	30	1	1.62
2950284--2950339	10	5.7	10	85	2	60	82	0	16	1	0.76
2950282--2950339	20	3.1	19	82	7	82	81	0	17	1	0.78
2950578--2950624	17	2.5	19	76	16	53	38	8	8	44	1.65
2950586--2950783	17	11.3	17	71	11	107	33	13	8	44	1.74
2950586--2950750	70	2.3	69	79	7	172	33	13	8	44	1.74
2950637--2950728	34	2.7	34	88	5	123	35	14	8	41	1.76
2950814--2950858	17	2.6	17	85	3	63	37	17	6	37	1.76
2950633--2950858	35	6.3	36	75	14	136	32	15	8	42	1.77
2950719--2950859	36	3.9	36	74	13	112	32	16	8	42	1.78
2950737--2950877	74	1.9	74	84	5	187	32	15	9	42	1.79
2950884--2950925	21	2.0	22	90	4	68	40	2	9	47	1.49
2950762--2950979	121	1.8	120	80	12	268	36	13	8	41	1.76
2950915--2950971	18	3.2	18	75	5	62	31	15	10	42	1.81
2950987--2951041	18	3.1	17	85	15	76	30	12	10	45	1.77
2952498--2952530	14	2.3	15	89	5	50	72	3	6	18	1.18
2964395--2964478	33	2.5	33	76	0	78	16	60	2	20	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2964450--2964479	15	2.0	15	93	0	51	13	63	0	23	1.29
2968702--2968734	15	2.2	15	100	0	66	48	9	6	36	1.60
2978297--2978350	22	2.5	21	85	11	74	46	1	0	51	1.11
2986450--2986509	32	1.9	32	86	3	86	45	11	1	41	1.50
3006713--3006805	18	5.2	18	90	0	150	27	24	16	31	1.96
3011750--3011823	9	7.7	9	77	14	76	63	2	1	32	1.17
3011736--3011823	20	4.8	18	77	13	74	64	3	1	30	1.17
3011752--3011823	29	2.5	28	76	13	74	63	2	1	31	1.17
3014749--3014782	18	1.9	17	94	5	59	0	29	11	58	1.33
3016758--3017085	95	3.4	94	89	6	446	33	22	14	29	1.94
3019956--3021604	824	2.0	824	99	0	3271	40	10	18	30	1.84
3022404--3022533	54	2.4	54	100	0	260	25	17	22	34	1.96
3023579--3023629	13	4.3	13	76	18	58	56	0	0	43	0.99
3023640--3023671	11	2.6	13	80	19	50	50	0	6	43	1.27
3023580--3023660	23	2.9	29	84	13	93	53	0	1	45	1.08
3023646--3023671	11	2.4	11	100	0	52	53	0	7	38	1.30
3031305--3031384	39	2.1	39	92	0	133	27	20	17	35	1.95
3031946--3031994	20	2.6	19	81	9	55	53	4	2	40	1.32
3045774--3045813	19	2.2	19	86	4	55	52	0	5	42	1.23
3045764--3045813	18	2.7	19	78	6	57	54	0	4	42	1.19
3045778--3045829	19	2.7	19	75	19	54	59	0	1	38	1.08
3045820--3045866	17	2.5	19	76	16	53	57	0	2	40	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3045980--3046009	6	5.0	6	100	0	60	83	0	0	16	0.65
3046090--3046183	29	3.3	27	77	14	91	32	6	3	57	1.40
3046143--3046188	19	2.4	18	85	7	56	39	4	2	54	1.32
3046068--3046198	57	2.2	61	82	9	164	32	6	3	58	1.40
3051700--3051736	18	2.0	19	89	5	58	21	2	48	27	1.63
3057245--3057292	17	2.8	17	87	6	62	25	4	6	64	1.35
3061267--3061305	17	2.1	20	86	13	57	17	2	5	74	1.12
3065515--3065604	31	2.9	30	71	11	83	45	13	4	36	1.63
3067051--3067086	17	2.1	17	94	0	63	44	0	0	55	0.99
3067152--3067238	38	2.3	39	84	8	115	51	4	1	42	1.29
3067340--3067404	29	2.3	28	78	19	73	50	4	0	44	1.22
3067785--3067813	14	2.1	14	100	0	58	65	13	6	13	1.45
3067846--3067890	22	2.0	22	95	0	81	66	22	0	11	1.22
3074693--3074741	25	2.0	24	84	11	64	40	2	20	36	1.64
3080057--3080149	18	5.2	18	90	0	150	31	16	24	27	1.96
3080057--3080149	36	2.6	36	94	0	168	31	16	24	27	1.96
3082679--3082720	15	2.8	15	85	0	57	52	19	0	28	1.46
3090275--3090330	23	2.5	22	85	5	76	14	5	3	76	1.09
3090276--3090332	24	2.5	23	81	13	73	15	5	3	75	1.12
3091037--3091100	32	2.0	32	90	0	101	37	10	9	42	1.73
3097832--3097924	18	5.2	18	90	0	150	31	16	24	27	1.96
3097832--3097924	36	2.6	36	94	0	168	31	16	24	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3106373--3106421	19	2.6	18	75	9	53	8	14	8	69	1.36
3111734--3111825	33	2.8	33	85	5	114	36	32	8	21	1.84
3111747--3111817	26	2.7	26	82	2	79	39	32	7	21	1.80
3112996--3113059	29	2.2	28	83	2	83	46	12	1	39	1.51
3115556--3115595	16	2.5	16	91	0	62	47	2	7	42	1.45
3115584--3115727	68	2.1	67	94	2	263	40	4	9	45	1.57
3115796--3115829	16	2.0	18	88	11	54	52	2	0	44	1.16
3116789--3116850	29	2.1	29	82	11	74	56	6	12	24	1.60
3125937--3125961	7	3.6	7	100	0	50	44	0	56	0	0.99
3127543--3127594	16	3.2	16	80	0	59	44	3	19	32	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144