genome.fa.s11.2.7.7.80.10.50.1000.128.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  128  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39852641--39852682	15	2.7	16	82	14	52	45	0	2	52	1.13
39852632--39852673	15	2.9	15	82	10	52	47	0	0	52	1.00
39852827--39852917	45	2.0	44	89	6	139	34	28	5	31	1.80
39852896--39852960	16	4.1	16	89	0	103	23	33	4	38	1.75
39856293--39857379	90	12.1	90	88	0	1424	30	23	15	30	1.95
39856293--39857379	45	24.2	45	83	1	1228	30	23	15	30	1.95
39862761--39862803	20	2.2	20	86	0	59	55	0	6	37	1.27
39862823--39862871	17	2.8	17	73	14	55	63	0	8	28	1.23
39867542--39867617	36	2.1	36	80	11	84	51	1	9	38	1.42
39867864--39867896	15	2.1	16	94	5	59	54	0	15	30	1.41
39868151--39868208	22	2.6	22	81	7	64	41	17	5	36	1.72
39868771--39868933	44	3.7	45	77	4	154	30	22	17	30	1.96
39868854--39869194	132	2.6	132	89	0	522	26	24	18	30	1.98
39868997--39869354	44	8.1	44	82	8	157	28	25	17	28	1.98
39868854--39869387	132	4.0	131	84	4	454	27	25	17	28	1.98
39869163--39869580	44	9.7	44	88	6	610	29	27	17	25	1.98
39869302--39869536	122	1.9	122	91	1	382	29	26	18	25	1.98
39870866--39870903	20	2.0	20	84	5	51	18	2	7	71	1.23
39870900--39870938	10	3.8	10	86	6	60	0	0	20	79	0.73
39871880--39871939	31	1.9	31	100	0	120	23	26	20	30	1.98
39876082--39876152	27	2.7	26	73	18	65	57	1	7	33	1.34
39876600--39876648	23	2.1	23	84	0	62	63	14	0	22	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39876835--39876892	22	2.6	22	81	7	64	41	17	5	36	1.72
39877518--39877548	10	3.1	10	95	0	53	45	0	0	54	0.99
39879060--39879137	39	2.0	39	92	0	129	26	20	8	43	1.81
39896528--39896562	18	2.0	17	88	5	52	45	0	0	54	0.99
39896672--39896706	18	2.0	17	88	5	52	45	0	0	54	0.99
39896868--39896962	45	2.1	45	88	1	138	32	27	5	34	1.79
39896941--39896973	16	2.1	16	94	0	57	30	36	0	33	1.58
39896954--39896996	21	2.0	21	95	0	77	34	37	0	27	1.57
39897674--39897787	62	1.9	59	85	8	158	40	3	5	50	1.42
39898159--39898205	19	2.5	19	72	6	51	51	2	2	44	1.25
39899695--39900088	183	2.1	183	82	4	470	46	8	11	33	1.71
39912254--39912318	26	2.5	26	87	2	87	21	26	27	24	1.99
39912410--39912475	27	2.5	27	82	2	80	48	1	16	33	1.56
39913089--39913121	14	2.4	14	94	0	57	27	0	24	48	1.51
39917354--39917387	15	2.3	15	90	5	52	41	8	17	32	1.80
39921556--39921580	2	12.5	2	100	0	50	52	0	0	48	1.00
39921603--39921652	19	2.6	19	87	6	75	34	10	0	56	1.33
39923190--39923236	19	2.3	20	82	17	62	29	0	4	65	1.11
39926162--39926203	10	4.5	10	77	17	54	35	0	2	61	1.09
39937480--39937516	15	2.6	14	87	8	56	45	18	8	27	1.77
39937496--39937535	20	2.0	20	100	0	80	50	15	10	25	1.74
39938565--39938598	16	2.1	17	88	5	52	61	0	26	11	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39971867--39971902	15	2.4	15	95	0	63	55	2	11	30	1.49
39972373--39972401	13	2.1	14	93	6	51	41	3	0	55	1.17
39973213--39973277	29	2.3	28	82	10	78	24	3	3	69	1.17
39990918--39991018	29	3.6	29	78	13	104	23	16	24	34	1.95
39991073--39991206	29	4.6	29	83	1	171	26	17	19	35	1.94
39991073--39991206	58	2.3	58	88	2	207	26	17	19	35	1.94
39993715--39993782	33	2.1	33	100	0	136	27	17	11	42	1.84
39999120--39999181	26	2.4	26	91	0	97	35	12	12	38	1.82
40009498--40009530	9	3.7	9	91	0	57	69	0	21	9	1.15
40020288--40020335	18	2.8	17	81	12	62	20	10	14	54	1.70
40032184--40032606	172	2.5	172	91	1	668	26	7	16	49	1.72
40039285--40039334	20	2.3	22	80	13	59	64	6	22	8	1.43
40039482--40039523	18	2.3	19	83	4	50	4	28	4	61	1.36
40041542--40041581	20	2.1	20	86	9	57	25	22	7	45	1.78
40044393--40044431	18	2.1	19	90	4	62	51	17	10	20	1.74
40045781--40045829	24	2.0	24	92	0	80	44	8	18	28	1.78
40046464--40046498	17	2.0	18	88	5	54	45	2	0	51	1.16
40047748--40047781	16	2.1	17	88	5	52	20	0	2	76	0.92
40051573--40051633	6	10.2	6	96	0	113	34	0	16	49	1.46
40053230--40053271	20	2.0	21	86	4	59	14	9	2	73	1.18
40061023--40061057	18	1.9	18	94	0	61	5	5	25	62	1.40
40066786--40066921	33	4.1	33	88	0	191	25	16	24	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40066799--40066921	16	7.5	16	68	18	83	25	15	25	34	1.95
40069307--40069472	83	2.0	83	95	0	296	44	17	16	21	1.86
40071408--40071462	27	2.0	27	96	0	101	29	27	10	32	1.91
40071914--40071945	14	2.3	14	100	0	64	50	25	6	18	1.70
40079014--40079085	25	2.9	24	78	12	74	31	20	8	38	1.83
40087809--40087835	14	1.9	14	100	0	54	62	7	0	29	1.22
40087544--40088100	289	1.9	291	81	4	685	42	11	11	35	1.76
40088308--40088465	57	2.8	57	83	1	183	27	16	12	43	1.84
40089195--40089225	16	1.9	16	93	0	53	70	0	0	29	0.87
40089238--40089286	25	1.9	25	87	4	71	69	2	0	28	1.00
40089295--40089333	19	2.0	20	90	5	62	64	2	0	33	1.08
40092135--40092184	26	2.0	26	85	14	70	42	16	24	18	1.89
40092650--40092747	34	2.9	34	77	8	101	24	20	22	32	1.98
40099911--40100054	46	3.1	46	73	5	121	31	23	14	29	1.94
40102310--40102346	17	2.1	18	90	5	58	48	13	0	37	1.43
40102393--40102436	17	2.5	17	85	3	52	52	25	0	22	1.48
40102759--40102826	28	2.4	28	87	0	100	36	13	13	36	1.83
40102760--40102826	14	4.8	14	83	0	80	37	13	11	37	1.82
40103084--40103164	34	2.4	34	85	0	108	27	23	18	30	1.98
40106159--40106207	20	2.5	19	83	6	53	65	4	0	30	1.11
40107881--40107956	30	2.5	29	78	16	82	38	0	3	57	1.17
40107881--40107956	31	2.5	30	83	10	84	38	0	3	57	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40107935--40107967	3	11.0	3	100	0	66	33	0	0	66	0.92
40110991--40111019	15	1.9	15	100	0	58	34	0	3	62	1.12
40115194--40115232	20	2.0	20	90	9	64	35	5	0	58	1.20
40116154--40116209	27	2.1	27	86	0	76	46	19	5	28	1.72
40121263--40121352	41	2.2	41	81	0	108	45	7	23	23	1.78
40129604--40129681	35	2.3	33	80	8	86	20	15	0	64	1.30
40129740--40129765	12	2.2	12	100	0	52	26	0	7	65	1.20
40129939--40130008	35	2.0	35	100	0	140	40	11	2	45	1.55
40130557--40130688	67	2.0	67	89	3	203	34	18	12	33	1.89
40136696--40136735	11	3.7	11	80	6	55	20	7	0	72	1.08
40136693--40136735	21	2.0	21	90	0	68	20	6	0	72	1.08
40137334--40137393	29	2.0	30	83	3	77	31	0	3	65	1.09
40153802--40154050	104	2.4	105	84	5	324	54	15	1	28	1.51
40153802--40154083	104	2.7	104	83	6	304	53	16	2	27	1.54
40154197--40154391	38	5.3	38	67	18	153	55	12	0	31	1.37
40154163--40154410	72	3.5	72	97	2	459	55	14	0	30	1.39
40154241--40154358	34	3.1	41	61	26	105	54	14	0	31	1.41
40154164--40154443	144	2.0	143	88	8	401	55	14	0	29	1.40
40154164--40154501	144	2.4	143	83	12	385	55	13	0	30	1.39
40154424--40154542	60	2.0	60	94	0	211	54	11	0	33	1.37
40154703--40154728	4	6.5	4	100	0	52	0	23	0	76	0.78
40155056--40155130	38	2.0	38	94	0	132	34	12	13	40	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40156874--40156919	17	2.7	18	87	9	62	43	4	0	52	1.21
40158698--40158754	27	2.1	28	93	3	98	42	8	0	49	1.34
40158831--40158900	27	2.6	27	93	4	115	27	28	28	15	1.96
40158942--40159172	4	55.0	4	73	19	145	69	0	30	0	0.88
40158950--40159172	34	6.4	34	72	19	138	69	0	30	0	0.89
40158985--40159194	45	5.0	45	78	15	207	70	0	29	0	0.87
40159101--40159229	36	3.6	33	79	15	114	72	0	27	0	0.85
40158943--40159231	45	6.2	45	68	14	122	70	0	29	0	0.88
40158933--40159202	79	3.5	79	88	6	378	69	0	30	0	0.89
40160195--40160226	15	2.1	15	100	0	64	53	0	6	40	1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144