genome.fa.s11.2.7.7.80.10.50.1000.137.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  137  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42453593--42453625	15	2.3	15	89	5	50	42	6	0	51	1.26
42454181--42454246	29	2.2	30	83	2	89	36	7	12	43	1.70
42455178--42455254	18	4.4	18	80	4	77	15	16	31	36	1.91
42455144--42455237	34	2.7	34	80	8	84	13	17	31	37	1.89
42455192--42455237	17	2.6	17	86	3	65	15	17	30	36	1.91
42457738--42457890	27	5.7	27	81	6	168	43	22	16	17	1.88
42457736--42457890	54	2.9	53	83	4	195	43	23	16	17	1.88
42457738--42457886	81	1.9	80	88	4	228	43	22	16	17	1.87
42457852--42457927	26	2.9	26	82	7	82	38	19	19	22	1.94
42457882--42457950	27	2.6	27	90	0	111	36	13	18	31	1.89
42463284--42463329	18	2.7	16	78	15	56	17	15	28	39	1.90
42470176--42470211	18	1.9	18	88	5	54	58	2	0	38	1.13
42480004--42480168	43	3.9	42	78	15	178	21	17	28	32	1.96
42480329--42480360	16	1.9	17	93	6	57	40	0	21	37	1.54
42483384--42483423	15	2.7	15	88	0	62	25	5	12	57	1.55
42483476--42483553	41	1.9	41	82	15	99	21	3	19	55	1.59
42483535--42483604	33	2.1	33	89	0	104	25	4	17	52	1.62
42483555--42483629	33	2.3	34	79	11	84	21	4	21	53	1.62
42483624--42483685	16	4.2	15	76	17	67	24	0	17	58	1.39
42483700--42483724	13	1.9	13	100	0	50	32	4	16	48	1.64
42490274--42490350	31	2.7	27	75	14	82	20	3	23	51	1.63
42499940--42500006	27	2.5	26	80	2	80	20	19	16	43	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42500154--42500779	67	9.4	67	83	2	679	25	26	16	31	1.96
42504885--42504928	16	2.7	16	82	3	52	25	11	22	40	1.87
42513596--42513648	27	2.0	27	88	0	79	22	15	33	28	1.94
42527194--42527333	43	3.3	43	92	2	219	29	10	16	44	1.80
42527315--42527356	10	3.9	10	82	17	57	38	2	19	40	1.64
42527318--42527369	13	4.2	13	80	14	65	40	3	13	42	1.62
42527315--42527369	23	2.4	23	96	0	101	40	3	16	40	1.66
42528512--42528554	21	2.0	21	100	0	86	32	9	13	44	1.76
42528901--42528941	21	2.0	21	85	0	55	46	21	14	17	1.84
42529289--42529336	18	2.5	19	80	16	55	54	8	0	37	1.31
42529278--42529337	28	2.2	26	82	11	68	56	6	0	36	1.26
42529306--42529341	18	2.0	18	89	10	56	55	5	0	38	1.23
42536667--42536692	11	2.4	11	100	0	52	34	7	11	46	1.69
42540002--42540041	22	1.9	21	90	10	64	45	0	5	50	1.23
42540133--42540219	39	2.2	40	76	15	101	41	2	3	52	1.31
42541547--42542462	115	8.0	115	90	2	1254	33	19	20	26	1.97
42543336--42543371	17	2.1	18	89	5	56	27	0	33	38	1.57
42543624--42543666	21	2.0	21	81	9	50	65	4	6	23	1.37
42543694--42543724	12	2.5	12	94	5	53	70	0	3	25	1.02
42543709--42543761	20	2.7	20	80	11	56	67	7	1	22	1.25
42543699--42543751	19	2.9	18	81	10	63	73	3	1	20	1.08
42544067--42544331	83	3.2	82	83	5	302	26	18	24	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42544595--42544645	16	3.2	16	80	0	57	15	43	13	27	1.85
42546503--42546983	259	1.9	259	98	0	937	49	8	11	31	1.68
42547146--42547221	16	4.6	16	70	23	68	46	18	0	35	1.50
42547146--42547688	9	62.9	9	67	20	114	44	13	2	39	1.57
42547146--42547222	25	3.1	25	77	18	97	45	18	0	36	1.49
42547243--42547343	22	4.6	22	68	26	72	49	11	0	38	1.40
42547382--42547427	22	2.1	22	91	0	74	45	10	0	43	1.39
42547048--42547531	31	15.0	31	72	19	314	45	11	1	40	1.51
42547560--42547610	16	3.1	16	88	5	75	43	21	1	33	1.64
42551496--42551838	172	2.0	172	98	0	668	33	15	17	33	1.92
42553690--42553762	21	3.5	21	82	0	92	35	19	42	2	1.65
42553796--42553936	43	3.3	43	75	7	151	24	19	30	26	1.98
42553767--42553932	86	1.9	86	92	0	278	21	18	31	28	1.97
42554017--42554059	22	2.0	22	90	0	68	44	27	18	9	1.80
42556702--42556766	30	2.2	30	97	0	121	27	30	3	38	1.72
42558520--42558562	18	2.4	18	88	0	59	20	25	9	44	1.81
42560363--42560887	126	4.2	126	88	0	719	30	17	15	36	1.91
42560941--42561068	34	3.8	33	83	7	161	45	16	0	38	1.48
42569164--42569202	20	1.9	21	89	5	62	5	10	10	74	1.21
42570395--42570420	6	4.3	6	100	0	52	15	0	0	84	0.62
42571779--42571821	22	2.0	22	95	0	77	9	20	27	41	1.83
42572000--42572313	43	7.3	43	77	2	290	29	30	16	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42571983--42572294	86	3.6	86	85	1	331	26	29	18	25	1.98
42572622--42572734	21	5.4	21	86	0	136	4	43	17	34	1.69
42572705--42572851	66	2.2	66	87	4	208	12	29	18	40	1.87
42572705--42572874	66	2.6	66	85	3	200	12	28	18	40	1.87
42584543--42584581	17	2.2	18	90	4	62	35	20	7	35	1.81
42584595--42584633	7	5.4	7	81	6	51	46	41	0	12	1.42
42584603--42584957	89	4.0	89	93	2	604	45	27	1	25	1.62
42584603--42584957	180	2.0	178	94	2	622	45	27	1	25	1.62
42584947--42584979	15	2.3	15	90	10	52	39	39	0	21	1.53
42585520--42586004	113	4.3	111	92	3	756	29	24	23	22	1.99
42586116--42586140	12	2.1	12	100	0	50	32	36	24	8	1.84
42591607--42591688	26	3.0	27	75	13	69	14	17	0	68	1.22
42600281--42600345	26	2.5	27	76	16	73	38	0	1	60	1.07
42600298--42600389	3	31.3	3	69	16	50	30	4	3	61	1.31
42600436--42600501	33	2.0	34	85	8	91	27	6	0	66	1.15
42600465--42600515	21	2.4	21	87	12	70	29	7	0	62	1.23
42600439--42600510	33	2.2	33	78	11	78	26	8	0	65	1.21
42603911--42603954	14	3.1	14	81	12	54	79	6	6	6	1.06
42604595--42604703	52	2.1	52	96	0	200	36	11	12	39	1.79
42609648--42609715	36	1.9	36	84	3	93	35	14	27	22	1.93
42609694--42609735	22	1.9	22	95	0	75	30	21	30	16	1.95
42615350--42615440	29	3.1	29	78	12	87	48	14	10	26	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42615366--42615440	29	2.5	29	86	4	96	46	13	13	26	1.80
42615394--42615462	29	2.3	29	85	9	86	47	13	14	24	1.79
42622973--42623028	29	2.0	27	83	13	69	57	3	12	26	1.52
42624864--42624907	21	2.1	21	87	8	63	27	11	0	61	1.30
42630761--42631079	112	2.9	112	90	3	484	32	18	15	33	1.92
42631425--42631463	15	2.5	16	87	4	53	38	5	10	46	1.60
42632296--42632335	20	2.0	20	100	0	80	15	40	35	10	1.80
42632447--42632477	14	2.2	14	88	0	53	83	0	9	6	0.79
42632449--42632475	14	1.9	14	100	0	54	81	0	11	7	0.87
42633358--42634721	50	27.3	50	71	4	733	21	20	25	32	1.97
42633612--42634715	398	2.8	398	91	0	1724	21	20	25	32	1.97
42635863--42635961	43	2.3	44	82	7	130	26	27	14	32	1.94
42636033--42636084	21	2.5	22	78	6	63	0	28	0	71	0.87
42640310--42640629	113	2.9	113	92	1	513	33	17	15	33	1.91
42640686--42640715	15	2.0	15	93	0	51	56	6	16	20	1.62
42640983--42641020	15	2.4	16	86	4	51	39	5	10	44	1.61
42641523--42641573	24	2.1	24	100	0	102	35	23	7	33	1.84
42643025--42643052	12	2.3	12	100	0	56	14	25	25	35	1.93
42645457--42645650	92	2.1	92	88	5	286	44	4	4	46	1.41
42645628--42645726	52	2.0	52	80	11	118	45	6	2	46	1.39
42645683--42645716	17	2.0	17	94	0	59	44	5	0	50	1.26
42645688--42645735	17	3.0	16	79	17	55	45	6	2	45	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42645789--42645830	15	2.7	16	82	14	52	45	0	2	52	1.13
42645780--42645821	15	2.9	15	82	10	52	47	0	0	52	1.00
42645764--42646077	154	2.0	156	96	1	578	47	5	3	44	1.41
42645930--42645964	18	2.0	17	88	5	52	45	0	0	54	0.99
42645765--42646000	75	3.1	75	66	16	212	46	2	3	47	1.34
42646210--42646250	16	2.6	16	92	0	64	36	34	0	29	1.58
42646296--42646340	14	3.4	14	79	8	51	53	2	6	37	1.40
42646388--42646431	21	2.0	21	82	4	52	50	2	9	38	1.47
42648069--42648095	13	2.1	13	100	0	54	70	14	0	14	1.17
42671435--42671503	25	2.8	25	81	0	75	21	21	23	33	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144