genome.fa.s11.2.7.7.80.10.50.1000.144.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  144  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44636801--44636827	11	2.5	11	100	0	54	51	18	7	22	1.70
44641057--44641213	40	3.9	40	87	3	226	27	21	27	24	1.99
44641057--44641209	80	1.9	80	91	0	252	28	20	26	24	1.99
44641059--44641233	80	2.2	79	85	3	233	26	21	27	24	1.99
44643032--44643063	16	2.0	16	93	0	55	12	6	40	40	1.68
44643778--44644030	73	3.5	72	91	3	391	31	18	17	32	1.95
44643963--44644208	88	2.8	87	84	4	289	34	19	17	28	1.94
44644430--44644766	72	4.5	74	85	4	421	32	19	15	32	1.93
44644430--44644784	147	2.4	147	82	6	423	35	18	14	31	1.91
44644784--44644958	70	2.5	71	84	4	214	34	22	13	29	1.92
44678920--44678970	25	2.0	25	85	7	68	19	0	7	72	1.08
44682342--44682385	22	2.0	22	90	0	70	36	22	22	18	1.95
44684119--44684152	16	2.2	16	84	5	52	82	0	17	0	0.67
44684122--44684151	5	5.8	5	92	7	51	80	0	20	0	0.72
44685464--44686126	89	7.5	89	85	2	805	30	24	22	23	1.99
44686343--44686573	94	2.5	94	83	1	293	32	20	17	29	1.96
44693321--44693496	55	3.2	53	83	7	201	26	13	29	30	1.94
44693346--44693496	27	5.6	27	92	3	232	27	13	29	29	1.95
44705971--44706031	10	6.1	10	74	12	54	32	13	24	29	1.93
44705972--44706032	20	3.0	20	83	9	79	32	13	26	27	1.93
44707936--44707988	23	2.4	22	76	20	56	9	18	1	69	1.25
44709068--44709116	10	4.9	10	78	9	55	26	30	16	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44709068--44709114	20	2.3	20	89	7	69	25	31	17	25	1.97
44711725--44711784	22	2.7	23	73	19	63	66	6	0	26	1.16
44711734--44711767	4	8.0	4	90	9	50	73	2	0	23	0.97
44718313--44718436	64	1.9	64	93	0	212	16	13	18	51	1.76
44718685--44718712	13	2.2	13	100	0	56	14	0	14	71	1.15
44719172--44719225	27	2.0	26	89	3	81	27	16	27	27	1.97
44743485--44743545	26	2.3	26	86	10	81	34	19	4	40	1.73
44743498--44743558	26	2.3	26	83	5	70	34	13	9	42	1.77
44754174--44754222	23	2.1	23	92	0	80	28	18	2	51	1.58
44754651--44754705	26	2.1	26	86	0	74	38	21	18	21	1.94
44754888--44754946	27	2.2	27	90	0	91	20	16	25	37	1.93
44754897--44755001	27	4.0	27	86	5	142	16	19	23	40	1.90
44754902--44755010	52	2.1	53	87	5	159	18	17	22	41	1.90
44755451--44755562	56	2.0	56	89	6	174	25	32	11	30	1.91
44760275--44760344	32	2.1	32	84	5	86	42	11	15	30	1.82
44760534--44760565	3	10.7	3	100	0	64	65	34	0	0	0.93
44762065--44762131	30	2.3	29	76	2	71	40	14	16	28	1.88
44762471--44762710	50	4.8	50	87	0	327	24	21	31	22	1.98
44778894--44779183	40	7.3	40	94	1	440	25	21	27	25	1.99
44778841--44779183	80	4.3	80	89	2	442	25	20	27	25	1.99
44778841--44779185	120	2.9	118	86	3	442	25	20	27	26	1.99
44784506--44784608	43	2.4	43	83	0	134	40	28	11	19	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44787265--44787291	14	1.9	14	100	0	54	92	0	7	0	0.38
44787396--44787423	12	2.3	12	100	0	56	50	10	7	32	1.64
44788161--44788187	14	1.9	14	100	0	54	14	11	22	51	1.73
44788307--44788341	16	2.1	17	94	5	63	68	5	0	25	1.11
44788390--44788435	22	2.1	22	83	0	56	41	2	0	56	1.11
44788455--44788512	16	3.4	16	85	9	71	46	3	5	44	1.42
44788444--44788499	26	2.2	26	86	0	76	50	3	5	41	1.43
44789628--44789760	50	2.7	49	80	4	124	40	36	1	21	1.62
44789717--44789747	15	2.1	15	93	0	53	35	41	0	22	1.54
44789722--44789755	15	2.3	15	89	0	50	44	35	0	20	1.52
44789735--44789785	22	2.3	23	70	16	54	45	25	1	27	1.64
44789772--44789817	14	3.4	14	87	6	67	45	34	0	19	1.51
44789834--44789881	14	3.6	14	72	11	55	43	2	2	52	1.24
44790010--44790328	154	2.1	154	80	7	362	30	20	18	30	1.97
44790241--44790407	40	4.2	40	77	4	167	26	20	22	31	1.98
44790241--44790407	79	2.1	80	84	5	214	26	20	22	31	1.98
44795826--44796081	130	2.0	130	91	1	415	21	21	8	48	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144

The End!