genome.fa.s11.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  37  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11081468--11081537	21	3.5	20	79	9	79	52	4	2	40	1.36
11085607--11085646	21	1.9	21	85	10	55	55	20	5	20	1.62
11090160--11090199	21	1.9	21	85	10	55	55	20	5	20	1.62
11094688--11094747	27	2.2	27	93	0	102	41	18	25	15	1.89
11094688--11094759	27	2.7	27	88	0	90	43	16	23	16	1.88
11098079--11098117	15	2.9	14	88	11	55	46	0	0	53	1.00
11102285--11102314	5	6.0	5	92	0	51	76	0	3	20	0.92
11110025--11110063	19	2.0	20	85	9	55	46	7	2	43	1.46
11110042--11110119	29	2.6	29	76	8	77	41	5	5	48	1.47
11114400--11114440	20	2.0	21	85	4	57	46	19	9	24	1.80
11126146--11126179	13	2.6	14	86	13	54	44	5	17	32	1.73
11130536--11130562	12	2.2	12	100	0	54	33	14	7	44	1.73
11134030--11134062	7	4.6	7	96	3	57	0	12	0	87	0.53
11141088--11141141	24	2.2	25	93	6	94	31	7	12	48	1.69
11145777--11145803	7	3.9	7	100	0	54	40	0	0	59	0.98
11147674--11147703	15	1.9	16	93	6	53	43	13	0	43	1.43
11149225--11149262	16	2.3	17	90	4	60	57	0	0	42	0.98
11175991--11176095	8	13.8	8	75	22	68	61	1	0	35	1.13
11175994--11176031	17	2.3	16	83	16	51	65	2	2	28	1.19
11176712--11176745	17	2.0	17	88	0	50	47	2	0	50	1.16
11201252--11201291	21	1.9	21	89	0	62	57	0	2	40	1.12
11201687--11201713	3	9.0	3	100	0	54	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11203665--11203734	30	2.3	31	87	2	97	51	0	2	45	1.16
11203713--11203761	24	2.0	25	84	8	64	57	0	2	40	1.10
11204913--11205019	32	3.2	34	82	7	146	17	22	16	42	1.88
11207817--11207861	20	2.1	22	84	12	58	13	11	8	66	1.44
11215238--11215565	163	2.0	163	97	0	620	32	7	26	33	1.83
11216587--11216616	15	2.0	15	100	0	60	40	6	26	26	1.81
11220836--11220956	43	2.8	43	78	9	138	21	19	28	29	1.98
11229008--11229068	23	2.7	22	80	16	63	60	4	3	31	1.34
11229008--11229075	12	5.8	12	72	14	54	61	4	2	30	1.30
11230488--11230535	24	2.0	23	84	15	62	29	2	8	60	1.37
11240478--11240529	24	2.2	24	85	0	68	50	7	3	38	1.50
11245203--11245254	24	2.2	24	85	0	68	50	7	3	38	1.50
11252817--11252892	24	3.4	24	66	17	72	43	17	6	32	1.74
11255089--11255171	26	3.4	24	77	11	71	36	21	27	14	1.93
11263619--11263643	8	3.1	8	100	0	50	36	12	0	52	1.39
11263642--11263696	26	2.1	26	86	6	76	25	21	9	43	1.82
11271572--11271785	107	2.0	106	89	0	329	36	15	22	25	1.93
11280467--11280554	21	4.1	22	77	10	92	35	26	23	14	1.94
11280472--11280553	44	1.9	41	82	7	101	32	28	24	14	1.94
11280745--11280839	28	3.6	24	81	13	93	46	33	4	15	1.66
11280759--11280842	28	3.0	28	91	1	132	46	30	3	19	1.66
11284403--11284445	14	3.1	14	93	0	77	41	0	2	55	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11284576--11284601	3	8.7	3	100	0	52	34	0	0	65	0.93
11285764--11285848	21	4.0	22	84	7	95	16	23	25	34	1.95
11285777--11285850	21	3.5	21	87	5	96	14	22	27	35	1.94
11298293--11298319	2	13.5	2	100	0	54	0	0	51	48	1.00
11300139--11300178	13	3.1	13	92	0	71	42	22	5	30	1.75
11304122--11304146	8	3.1	8	100	0	50	16	0	0	84	0.63
11312827--11312898	34	2.1	34	89	0	108	25	26	22	26	2.00
11318852--11318911	26	2.3	27	78	18	65	36	1	1	60	1.17
11327542--11327597	22	2.5	22	85	5	69	25	26	17	30	1.97
11334120--11334188	31	2.3	31	85	5	88	27	18	14	39	1.90
11342504--11342530	8	3.4	8	100	0	54	25	0	0	74	0.83
11347709--11347788	41	2.0	41	87	0	115	26	18	22	32	1.97
11347914--11347963	21	2.4	21	78	15	68	48	2	10	40	1.48
11350243--11350289	19	2.4	19	76	13	51	4	14	8	72	1.24
11352583--11352848	37	7.0	37	90	7	392	25	20	16	37	1.93
11352766--11353178	46	8.6	46	84	9	520	28	21	14	35	1.93
11352766--11353178	98	4.3	98	94	1	667	28	21	14	35	1.93
11355543--11355581	20	2.0	20	84	0	51	33	7	17	41	1.79
11366255--11366296	18	2.3	18	88	8	59	26	0	0	73	0.83
11366256--11366297	20	2.2	20	91	8	70	23	0	0	76	0.79
11370848--11370914	20	3.0	22	75	20	61	44	0	2	52	1.16
11370848--11370933	35	2.5	36	83	9	110	45	0	3	51	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11371547--11371647	40	2.6	38	84	6	114	30	7	21	39	1.82
11371571--11371647	40	1.9	40	89	0	118	28	7	22	41	1.81
11377991--11378059	16	4.2	16	92	3	120	24	1	37	36	1.65
11377991--11378059	33	2.1	32	94	2	120	24	1	37	36	1.65
11378295--11378329	18	2.0	17	88	5	52	54	0	0	45	0.99
11378278--11378540	120	2.2	120	97	0	499	48	5	1	43	1.37
11381572--11381681	33	3.3	33	81	11	136	31	8	17	42	1.78
11381628--11381832	51	4.0	51	98	1	387	28	7	18	45	1.77
11381899--11382079	86	2.1	86	98	1	355	47	7	4	40	1.52
11398237--11398292	28	2.0	27	86	10	76	37	1	0	60	1.07
11409377--11409520	48	3.0	48	94	0	252	29	12	29	28	1.93
11411489--11411688	41	4.9	41	86	0	274	27	21	22	29	1.99
11412065--11412095	14	2.1	15	94	5	55	32	0	35	32	1.58
11412757--11412790	16	2.1	16	88	5	50	70	2	2	23	1.15
11413643--11413667	13	1.9	13	100	0	50	32	8	32	28	1.86
11414510--11414569	24	2.5	24	89	2	95	23	10	8	58	1.57
11416715--11416782	21	3.4	21	67	22	65	35	1	8	54	1.41
11416960--11417143	43	4.3	43	88	0	289	20	18	33	27	1.96
11421785--11421825	21	2.0	21	90	0	64	29	21	29	19	1.98
11424705--11424750	24	2.0	24	86	4	67	15	15	8	60	1.57
11427416--11427472	28	2.0	28	96	0	105	24	7	22	45	1.77
11429532--11429623	46	2.0	46	100	0	184	45	6	30	17	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11447542--11447733	91	2.1	92	92	0	314	45	3	4	46	1.40
11447668--11447775	18	5.7	18	69	21	60	45	2	1	49	1.27
11447664--11447724	28	2.2	28	85	5	81	45	0	3	50	1.17
11447582--11447724	44	3.2	43	69	20	121	46	2	3	48	1.31
11447582--11447883	153	2.0	148	92	3	496	46	3	1	48	1.30
11447673--11447796	62	2.0	61	92	1	203	46	3	0	48	1.24
11447673--11447974	10	34.3	9	63	26	55	47	3	0	48	1.25
11447741--11448048	87	3.5	87	99	0	598	46	3	0	49	1.25
11448293--11448325	17	1.9	17	100	0	66	42	33	0	24	1.55
11448377--11448408	16	2.0	16	100	0	64	18	31	6	43	1.75
11453533--11453572	18	2.3	17	86	4	53	32	0	2	65	1.06
11457698--11457744	5	9.4	5	97	0	67	27	59	0	12	1.34
11461288--11461335	23	2.1	23	84	0	60	25	6	18	50	1.70
11461613--11461665	7	7.4	7	80	2	52	22	0	39	37	1.54
11461610--11461707	14	7.0	14	77	0	88	22	2	36	38	1.66
11461610--11461704	21	4.5	21	77	2	86	23	2	34	40	1.66
11462389--11462453	33	1.9	34	90	9	107	46	12	7	33	1.70
11465044--11465088	18	2.5	18	96	0	81	48	11	0	40	1.39
11465048--11465088	9	4.6	9	81	0	55	46	12	0	41	1.41
11465110--11465143	17	1.9	18	88	5	52	38	5	0	55	1.24
11465206--11465270	9	7.2	9	83	0	85	49	15	1	33	1.54
11465206--11465275	27	2.6	27	90	0	104	50	14	1	34	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11467937--11467998	21	3.0	21	87	0	88	33	17	43	4	1.71
11468436--11468528	43	2.2	43	86	3	125	27	17	27	26	1.97
11468493--11468677	42	4.3	42	83	2	219	26	23	20	29	1.99
11468493--11468658	85	2.0	84	85	3	226	25	23	19	31	1.98
11473654--11473705	23	2.3	24	87	9	74	48	5	3	42	1.45
11475680--11476516	92	9.1	92	99	0	1640	40	6	4	48	1.48
11476522--11476888	9	42.7	9	66	15	116	45	19	4	29	1.70
11476632--11476731	37	2.7	37	96	0	182	49	19	3	29	1.63
11476716--11476837	16	8.0	16	68	20	82	45	18	5	29	1.73
11476736--11476867	25	5.3	25	71	5	70	43	20	5	31	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144