genome.fa.s11.2.7.7.80.10.50.1000.135.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  135  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41923299--41923371	17	4.3	17	72	6	76	26	28	16	28	1.97
41929729--41929754	13	2.0	13	100	0	52	76	0	0	23	0.78
41932653--41932691	19	2.1	19	100	0	78	20	20	20	38	1.94
41932988--41933045	27	2.1	27	90	0	89	18	15	31	34	1.93
41933606--41933630	13	1.9	13	100	0	50	16	28	24	32	1.96
41937893--41937957	25	2.6	25	95	0	112	21	20	26	32	1.97
41938612--41938675	32	2.0	32	100	0	128	34	12	15	37	1.85
41944051--41944113	3	21.0	3	96	0	117	33	0	1	65	1.03
41945645--41945675	9	3.4	9	90	0	53	25	12	22	38	1.90
41945954--41946011	30	1.9	31	82	10	75	18	34	0	46	1.50
41947303--41947345	21	2.0	21	82	8	52	20	34	0	44	1.52
41952015--41952072	30	1.9	30	85	0	80	36	3	27	32	1.74
41953672--41953705	16	2.2	16	89	5	52	23	0	20	55	1.43
41954839--41954967	43	3.0	43	79	15	140	23	18	28	29	1.98
41955610--41955644	15	2.3	15	90	9	54	25	0	22	51	1.48
41956104--41956138	15	2.3	15	90	9	54	25	0	22	51	1.48
41955312--41956297	494	2.0	494	99	0	1954	27	9	19	42	1.83
41956489--41956558	21	3.2	21	68	18	52	34	10	11	44	1.74
41956562--41956640	25	3.3	25	70	20	78	35	12	13	37	1.83
41956499--41956674	47	3.8	47	90	3	268	34	12	13	39	1.83
41956866--41956900	15	2.3	15	90	9	54	25	0	22	51	1.48
41957261--41957553	47	6.4	45	87	4	415	32	12	13	40	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41955919--41957443	762	2.0	762	99	0	3005	32	8	17	41	1.80
41957261--41957523	139	1.9	139	96	0	490	33	11	14	40	1.82
41957250--41957553	92	3.3	92	89	2	459	32	12	13	41	1.82
41957829--41958121	47	6.4	45	87	4	415	32	12	13	40	1.82
41957829--41958091	139	1.9	139	96	0	490	33	11	14	40	1.82
41957818--41958121	92	3.3	92	89	2	468	32	12	13	41	1.82
41957261--41957592	139	2.4	139	88	4	454	33	12	14	40	1.83
41957096--41958231	568	2.0	568	100	0	2272	33	10	15	41	1.80
41960236--41960273	20	1.9	20	88	0	58	34	5	7	52	1.53
41977012--41977657	155	4.3	152	86	7	903	29	10	7	52	1.64
41977080--41977631	300	1.8	301	91	3	914	30	10	7	51	1.64
41979945--41979982	11	3.5	11	82	7	51	10	23	0	65	1.23
41979938--41979982	21	2.1	22	87	4	65	8	26	0	64	1.23
41986651--41986705	21	2.7	21	78	13	60	34	9	25	30	1.87
41989444--41989481	20	1.9	20	84	10	51	42	2	2	52	1.29
41996932--41996970	5	7.4	5	85	8	51	66	0	0	33	0.92
42006282--42006331	21	2.3	20	78	21	57	50	6	2	42	1.38
42006297--42006347	23	2.2	24	80	16	63	54	1	1	41	1.22
42006286--42006330	22	2.0	23	87	12	67	53	6	2	37	1.40
42012054--42012295	124	2.0	124	85	1	333	29	19	16	35	1.93
42017674--42017876	46	4.3	48	88	7	265	35	14	21	28	1.92
42017608--42017876	98	2.7	98	93	0	457	34	14	22	28	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42017840--42017985	37	4.0	37	93	1	242	36	16	21	24	1.94
42018743--42019059	125	2.5	125	87	2	440	29	21	17	30	1.96
42020638--42020755	40	2.9	39	81	8	114	19	32	26	22	1.97
42026439--42026664	124	1.8	124	83	1	301	30	18	16	34	1.93
42035610--42035659	25	2.0	25	88	4	73	56	2	12	30	1.47
42039487--42039532	21	2.2	21	96	0	83	50	26	8	15	1.73
42044644--42044689	15	3.1	15	87	3	58	45	34	0	19	1.51
42044653--42044689	7	4.9	8	83	9	51	48	37	0	13	1.43
42044725--42044824	22	4.7	21	71	9	67	46	29	2	23	1.63
42045129--42045441	41	7.7	41	78	7	253	30	27	18	22	1.98
42045129--42045441	82	3.8	80	78	5	299	30	27	18	22	1.98
42045494--42045617	40	3.1	39	77	5	124	21	16	20	40	1.91
42045494--42045577	39	2.1	39	86	2	114	20	19	21	39	1.93
42054769--42054819	22	2.3	22	93	0	84	27	31	1	39	1.68
42054791--42054891	51	2.0	51	86	3	141	30	27	0	41	1.56
42055002--42055032	15	2.0	16	93	6	55	25	0	6	67	1.14
42055595--42056049	249	1.8	249	99	0	892	25	20	24	29	1.99
42056663--42056697	18	1.9	18	88	0	52	25	34	8	31	1.86
42056701--42056940	132	1.8	132	93	0	417	19	25	30	24	1.98
42057349--42057853	29	16.6	29	83	10	575	46	31	0	22	1.54
42057339--42057854	64	8.4	64	81	12	539	46	31	0	22	1.54
42057349--42057853	93	5.5	92	83	9	631	46	31	0	22	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42057850--42058061	110	1.9	112	92	2	356	34	11	7	46	1.68
42057850--42058052	56	3.6	55	87	7	302	34	11	6	46	1.67
42062421--42062596	97	1.9	90	83	9	228	33	18	17	31	1.94
42067348--42067411	17	3.6	17	72	15	58	48	14	10	26	1.76
42067349--42067419	36	2.0	36	91	0	115	49	14	11	25	1.76
42068681--42068710	10	3.0	10	95	0	51	66	0	0	33	0.92
42069086--42069160	18	4.2	18	71	8	55	32	2	1	64	1.16
42071185--42071257	35	2.1	35	100	0	146	49	10	5	34	1.61
42076143--42076233	37	2.5	37	82	8	114	13	13	32	40	1.83
42080953--42081020	16	4.2	16	96	0	127	25	1	35	38	1.65
42081256--42081290	18	2.0	17	88	5	52	54	0	0	45	0.99
42081143--42081459	157	2.0	157	95	0	562	44	2	4	47	1.38
42081393--42081434	15	2.7	16	82	14	52	52	2	0	45	1.13
42081402--42081443	15	2.9	15	82	10	52	52	0	0	47	1.00
42084645--42084672	11	2.5	11	100	0	56	42	10	39	7	1.67
42085434--42085488	24	2.3	23	84	9	67	47	16	3	32	1.64
42087772--42087805	17	2.0	17	88	11	52	58	0	8	32	1.29
42087822--42087855	15	2.3	15	94	0	59	64	14	2	17	1.40
42088162--42088193	9	3.6	9	91	0	55	56	3	0	40	1.15
42097846--42097881	17	2.2	16	85	5	54	75	0	0	25	0.81
42097844--42097880	16	2.3	17	90	9	60	72	0	0	27	0.84
42103698--42104266	284	2.0	285	91	1	926	30	22	11	35	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42106399--42106440	21	2.0	20	86	4	57	30	11	28	28	1.92
42108827--42108908	19	4.4	17	72	20	58	34	3	0	62	1.13
42108806--42108917	10	11.4	10	71	17	67	37	3	0	58	1.22
42132021--42132049	12	2.3	13	94	5	51	20	6	6	65	1.40
42138150--42139379	625	2.0	626	95	0	2237	32	16	13	37	1.87
42140629--42140684	28	2.0	28	92	0	94	37	16	16	30	1.90
42140638--42140696	28	2.1	28	87	0	82	35	18	18	27	1.94
42141166--42141224	31	1.9	31	89	0	91	50	11	20	16	1.76
42156488--42156551	33	1.9	33	84	6	85	42	4	18	34	1.71
42164947--42164978	12	2.7	12	100	0	64	34	6	0	59	1.23
42165346--42165440	4	23.8	4	74	16	81	21	4	4	70	1.21
42170012--42170049	13	2.7	15	80	19	55	76	0	23	0	0.79
42171271--42172169	88	10.2	88	87	0	1169	27	22	24	25	2.00
42171490--42172303	132	6.2	132	69	9	384	27	23	24	24	2.00
42172029--42172317	132	2.2	132	84	0	389	27	24	23	24	2.00
42171271--42172317	264	4.0	260	79	6	940	27	23	24	25	2.00
42172246--42172465	45	4.9	45	75	11	193	30	23	22	23	1.99
42172238--42172450	44	4.8	45	73	14	181	30	23	22	23	1.99
42172238--42172465	89	2.6	89	84	5	291	31	22	22	22	1.98
42174480--42174579	9	11.1	9	75	16	75	21	5	2	72	1.14
42174512--42174620	4	26.8	4	75	16	91	21	3	3	71	1.17
42174502--42174573	33	2.2	33	87	5	101	22	2	1	73	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42174764--42175160	111	3.6	111	94	1	656	30	13	20	35	1.92
42176803--42176909	9	12.2	9	88	5	166	22	14	30	32	1.93
42176804--42176908	26	4.0	26	98	0	201	22	14	31	31	1.94
42178987--42179123	43	3.2	43	91	0	220	27	32	18	21	1.96
42178987--42179150	43	3.8	43	84	7	199	29	32	17	20	1.95
42180035--42180315	23	12.3	23	83	8	333	37	25	7	28	1.84
42180651--42180734	39	2.1	39	86	4	114	51	7	11	29	1.65
42182576--42182627	26	2.0	26	92	7	88	21	1	7	69	1.24
42182700--42182890	105	1.8	106	88	3	296	28	10	10	50	1.71
42182753--42183150	152	2.7	150	87	7	540	29	13	12	44	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144