genome.fa.s11.2.7.7.80.10.50.1000.30.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  30  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9128610--9128649	21	1.9	21	94	0	71	42	25	0	32	1.55
9138649--9138723	36	2.1	36	94	0	132	38	12	25	24	1.89
9149907--9149945	8	4.9	8	90	0	51	35	25	12	25	1.92
9167016--9167041	3	8.7	3	100	0	52	0	30	0	69	0.89
9167178--9167204	3	9.0	3	100	0	54	0	33	0	66	0.92
9179950--9179976	13	2.1	13	100	0	54	22	7	55	14	1.64
9191372--9191441	25	3.0	23	76	16	63	20	5	1	72	1.12
9191372--9191441	24	3.0	24	79	12	65	20	5	1	72	1.12
9191386--9191442	6	9.3	6	80	14	55	19	3	1	75	1.04
9192489--9192548	29	2.0	32	83	9	81	48	6	26	18	1.72
9195668--9195702	3	11.7	3	93	0	52	25	0	5	68	1.11
9197480--9197510	15	2.1	15	100	0	62	22	32	6	38	1.80
9201828--9201858	15	2.1	15	100	0	62	22	32	6	38	1.80
9202609--9202653	16	2.8	16	80	9	56	33	15	20	31	1.93
9207748--9207920	43	4.1	43	74	8	156	32	27	17	22	1.96
9214488--9214706	113	1.9	114	90	2	352	38	14	15	31	1.87
9227227--9227264	14	2.6	15	87	4	51	60	0	5	34	1.19
9232438--9232475	11	3.5	11	85	0	58	52	0	0	47	1.00
9232464--9232526	25	2.5	25	97	0	117	57	0	4	38	1.20
9232443--9232522	25	3.4	23	85	8	99	57	0	3	38	1.17
9236248--9237298	107	9.8	107	91	3	1663	33	21	17	27	1.96
9237430--9237500	38	1.9	36	85	5	97	64	9	7	18	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9239436--9239634	44	4.7	41	73	11	145	27	23	21	28	1.99
9239699--9239942	87	2.8	87	76	7	244	27	22	20	29	1.98
9239601--9240072	218	2.2	215	93	1	793	27	23	19	29	1.98
9239601--9240070	44	10.8	45	72	11	252	27	23	19	29	1.98
9251749--9252470	216	3.4	216	94	1	1281	33	20	16	28	1.95
9254610--9254787	40	4.3	41	72	16	152	25	24	20	29	1.99
9254775--9255245	218	2.2	215	93	1	807	27	22	20	30	1.98
9254775--9255242	44	10.8	42	69	12	225	27	22	20	29	1.98
9256577--9256633	29	2.0	28	96	0	96	43	8	21	24	1.80
9258017--9258095	33	2.4	33	91	0	131	29	26	17	26	1.98
9259857--9259897	4	10.2	4	85	15	50	24	0	29	46	1.53
9259847--9259907	27	2.3	26	78	18	72	24	0	32	42	1.55
9267866--9267890	2	12.5	2	100	0	50	48	0	0	52	1.00
9268736--9268834	30	3.2	31	77	8	87	42	6	14	37	1.70
9268782--9268842	30	2.0	30	84	9	79	47	4	16	31	1.68
9290441--9290770	114	2.9	111	78	7	333	25	23	23	27	2.00
9291750--9291792	13	3.2	13	83	3	50	4	0	48	46	1.22
9291751--9291791	20	2.1	19	86	4	55	4	0	51	43	1.23
9291735--9291830	7	13.9	7	70	2	50	8	0	43	47	1.33
9292856--9292900	19	2.4	19	84	0	63	33	40	2	24	1.68
9295093--9295230	37	3.7	37	93	0	222	48	9	6	35	1.61
9295175--9296015	57	14.8	57	85	3	981	46	9	4	39	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9295167--9296024	170	5.1	170	85	5	1164	46	9	4	39	1.57
9295677--9295777	37	2.7	37	92	0	166	49	8	5	35	1.59
9295580--9295854	150	1.8	151	92	0	462	46	8	5	39	1.57
9295816--9295874	20	2.8	23	97	2	76	45	5	5	44	1.47
9295999--9296225	9	26.0	9	74	11	195	44	21	1	32	1.63
9296000--9296187	104	1.8	104	91	2	315	45	20	2	31	1.63
9296145--9296193	25	2.0	25	95	0	89	48	24	0	26	1.51
9301702--9301748	21	2.2	21	84	0	58	34	17	44	4	1.68
9304543--9304594	20	2.5	20	84	9	61	38	0	5	55	1.24
9306719--9306770	24	2.2	24	89	0	77	38	1	7	51	1.42
9309369--9309502	40	3.4	40	78	7	148	32	24	16	26	1.96
9310007--9310042	18	1.9	19	88	5	56	33	27	0	38	1.57
9310318--9310378	30	2.1	30	84	6	81	0	21	4	73	1.01
9310317--9310390	28	2.6	28	81	10	89	0	21	4	74	0.98
9310317--9310390	24	2.9	26	77	20	77	0	21	4	74	0.98
9310339--9310388	21	2.4	21	80	6	57	0	24	6	70	1.10
9310405--9310490	35	2.4	38	79	16	103	46	3	1	48	1.26
9323389--9323455	34	2.0	33	96	0	116	38	11	31	16	1.85
9332404--9332770	44	8.5	44	74	10	251	30	20	21	26	1.98
9332445--9332803	168	2.1	169	89	4	535	30	20	22	27	1.98
9338109--9338151	21	2.0	21	86	0	59	30	2	0	67	1.03
9341050--9341131	3	27.3	3	75	18	57	65	2	2	29	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9341065--9341131	15	4.4	15	78	17	75	65	1	1	31	1.10
9341067--9341131	23	2.9	22	81	6	85	66	1	1	30	1.10
9341436--9341652	114	1.9	113	97	2	409	47	17	12	23	1.82
9341999--9342089	42	2.2	41	90	3	139	10	12	14	62	1.54
9346152--9346199	21	2.3	21	85	7	62	35	35	25	4	1.75
9346477--9346538	21	3.0	21	92	0	106	46	27	1	24	1.62
9346476--9346569	21	4.4	21	84	1	98	45	30	1	22	1.59
9346715--9346774	21	3.0	19	85	7	75	50	23	1	25	1.59
9346778--9346810	15	2.1	16	88	5	50	57	27	0	15	1.38
9346729--9346904	22	8.1	22	74	11	112	51	26	0	21	1.52
9346740--9346904	44	3.8	44	78	9	144	50	26	0	21	1.53
9346888--9347350	22	21.6	22	68	12	153	48	28	1	21	1.57
9346885--9346926	15	2.8	15	82	7	50	47	30	0	21	1.51
9347022--9347097	15	5.1	15	72	4	64	52	32	1	13	1.48
9347037--9347061	7	3.6	7	100	0	50	48	52	0	0	1.00
9347015--9347097	29	2.8	29	79	3	85	53	32	1	13	1.48
9346901--9347212	172	1.8	171	87	2	464	47	29	1	21	1.59
9347150--9347342	22	9.0	21	78	2	154	50	26	0	22	1.53
9347279--9347375	15	6.6	15	68	11	58	51	25	0	22	1.48
9347469--9347715	21	11.6	21	69	11	135	50	27	0	22	1.49
9347469--9347715	22	11.5	22	70	15	144	50	27	0	22	1.49
9347469--9347892	44	10.0	42	74	14	254	49	27	0	23	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9347528--9347589	29	2.1	29	85	5	81	54	27	0	17	1.43
9347474--9347857	86	4.6	84	72	16	225	48	27	0	23	1.54
9347470--9347798	21	15.9	20	67	17	84	49	27	0	22	1.54
9347751--9347855	22	4.9	22	78	3	106	50	25	0	22	1.55
9347766--9347892	50	2.8	44	85	8	157	51	25	0	23	1.49
9347896--9347943	14	3.4	14	75	16	53	47	31	0	20	1.50
9347817--9347928	50	2.3	49	81	10	122	50	28	0	21	1.49
9347924--9347971	24	2.0	24	84	8	62	50	27	2	20	1.60
9347996--9348202	22	9.4	22	78	4	186	52	27	0	20	1.47
9347994--9348202	44	4.8	44	78	9	214	51	27	0	21	1.48
9348104--9348136	16	2.0	17	88	5	50	60	18	0	21	1.36
9348164--9348230	30	2.3	28	80	7	80	46	28	0	25	1.53
9351384--9352072	125	5.5	125	86	5	853	29	22	17	30	1.97
9355862--9355913	28	2.0	25	88	11	77	34	3	3	57	1.35
9359587--9359641	19	2.9	19	89	7	78	41	0	5	52	1.24
9361176--9361285	46	2.4	46	95	0	193	29	20	17	32	1.96
9361010--9361509	275	1.8	275	95	0	903	28	21	13	36	1.91
9365277--9365318	15	2.8	15	78	10	50	50	0	0	50	1.00
9365282--9365341	15	3.9	15	74	22	52	56	1	0	41	1.09
9365392--9365437	23	2.0	24	87	12	69	36	0	2	60	1.09
9365770--9365821	16	3.2	16	91	0	86	28	0	32	38	1.57
9366037--9366091	15	3.4	16	80	16	53	50	1	0	47	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9366057--9366091	18	2.0	17	88	5	52	54	0	0	45	0.99
9366086--9366272	61	3.1	61	68	11	195	47	6	3	43	1.45
9366177--9366211	18	2.0	17	88	5	52	54	0	0	45	0.99
9366040--9366309	120	2.2	120	98	0	513	48	5	2	44	1.38
9367720--9367756	19	1.9	19	94	0	65	29	18	18	32	1.96
9382654--9382992	46	7.7	46	80	10	361	32	20	19	26	1.97
9386410--9386507	48	2.0	48	92	0	160	48	8	19	23	1.75
9391686--9391779	45	2.1	45	82	5	111	54	10	9	25	1.65
9392147--9392180	17	2.0	17	88	0	50	35	0	20	44	1.52
9393980--9394009	14	2.1	14	100	0	60	33	46	13	6	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144