genome.fa.s11.2.7.7.80.10.50.1000.140.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  140  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43346859--43346907	24	2.0	24	100	0	98	53	0	4	42	1.20
43346559--43346996	219	2.0	219	99	0	860	38	7	8	46	1.62
43359617--43359647	15	2.1	15	100	0	62	6	32	6	54	1.51
43360852--43360973	50	2.4	50	86	0	154	26	26	27	20	1.99
43361459--43361494	19	1.9	18	88	5	54	50	5	5	38	1.49
43363517--43363544	8	3.5	8	100	0	56	25	0	0	75	0.81
43372121--43372180	28	2.1	28	84	6	77	30	6	10	53	1.60
43373042--43373445	201	2.0	201	100	0	808	40	8	13	37	1.75
43375090--43375123	13	2.6	13	85	0	50	41	0	0	58	0.98
43375112--43375153	15	2.8	16	82	13	54	54	0	0	45	0.99
43375162--43375229	34	2.1	31	86	8	91	52	4	0	42	1.21
43375178--43375229	15	3.2	15	73	19	50	55	1	0	42	1.10
43389696--43389752	12	4.8	12	77	0	51	5	54	3	36	1.40
43392508--43392555	25	1.9	25	100	0	96	31	6	25	37	1.81
43393428--43393827	104	3.9	104	98	0	777	49	9	15	25	1.74
43394438--43394466	15	1.9	15	100	0	58	31	13	0	55	1.39
43395680--43395709	15	2.0	15	93	0	51	63	0	13	23	1.29
43399500--43399603	3	32.7	3	70	16	50	64	4	5	25	1.36
43399544--43399619	16	4.8	16	70	15	59	68	1	6	23	1.21
43401069--43401697	44	13.6	47	72	10	324	28	20	19	31	1.97
43401537--43401712	94	1.9	94	83	2	228	30	20	19	29	1.97
43405724--43405836	32	3.5	33	80	7	115	36	13	10	39	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43406893--43407350	136	3.4	136	99	0	898	29	18	15	36	1.92
43407327--43407373	23	2.0	23	95	0	85	36	12	23	27	1.91
43417382--43417463	10	8.3	10	73	20	66	34	0	0	65	0.93
43417400--43417482	10	8.7	9	73	19	53	34	1	1	62	1.11
43426514--43426540	6	4.5	6	100	0	54	51	0	0	48	1.00
43426742--43426793	9	5.7	9	81	4	68	34	1	42	21	1.64
43426742--43426795	18	2.9	18	86	5	81	35	1	40	22	1.65
43429003--43429056	4	13.2	4	88	3	81	48	25	1	24	1.61
43432563--43432617	18	3.1	18	86	5	76	38	0	9	52	1.33
43432718--43432742	10	2.5	10	100	0	50	28	0	16	56	1.41
43436471--43436512	18	2.4	18	80	4	50	30	11	16	40	1.85
43442873--43442944	28	2.6	28	88	0	99	27	19	13	38	1.90
43445311--43445358	20	2.5	20	89	3	71	64	2	4	29	1.23
43445382--43445411	15	2.0	15	93	0	51	40	10	0	50	1.36
43445407--43445436	5	5.8	5	96	4	51	76	0	0	23	0.78
43448831--43448931	28	3.6	28	84	6	125	23	28	16	30	1.97
43455277--43455319	16	2.6	17	78	14	54	44	9	0	46	1.35
43458119--43458201	24	3.3	24	77	11	87	44	34	8	12	1.72
43460972--43461011	3	13.3	3	100	0	80	32	0	0	67	0.91
43471600--43471625	10	2.6	10	100	0	52	7	0	11	80	0.89
43478402--43478449	13	3.7	13	77	0	60	35	8	22	33	1.84
43480834--43480870	18	2.0	18	89	5	56	62	2	0	35	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43480834--43480878	18	2.3	18	85	11	54	60	2	2	35	1.22
43480945--43480982	12	3.0	13	80	7	51	47	0	0	52	1.00
43480986--43481025	19	2.1	19	85	0	53	20	2	7	70	1.24
43484676--43484766	45	2.0	45	97	0	173	38	13	20	27	1.90
43490248--43490306	30	2.0	30	96	0	109	42	0	15	42	1.46
43491601--43491625	6	4.2	6	100	0	50	16	36	0	48	1.46
43494611--43494775	69	2.4	69	97	0	312	33	8	10	46	1.69
43508204--43508238	17	2.0	17	88	5	52	45	0	0	54	0.99
43512584--43512767	95	1.9	95	98	0	359	21	22	29	26	1.99
43518938--43518987	22	2.2	23	85	7	66	40	16	12	32	1.84
43520739--43520773	17	2.1	17	100	0	70	62	0	17	20	1.32
43523439--43523499	23	2.6	24	79	5	63	55	6	0	37	1.26
43523467--43523509	23	1.9	23	85	4	61	44	9	0	46	1.35
43526446--43526491	15	3.0	15	87	3	65	52	0	15	32	1.43
43527820--43527883	25	2.5	26	80	7	69	35	1	7	54	1.39
43528325--43528378	21	2.6	21	76	5	56	16	25	24	33	1.96
43528978--43529011	17	1.9	18	94	5	61	82	0	5	11	0.83
43534646--43534707	30	2.1	30	90	0	97	16	14	22	46	1.83
43540507--43540544	20	1.9	20	88	0	58	42	7	23	26	1.81
43541092--43541120	10	2.9	10	100	0	58	20	10	27	41	1.85
43544947--43544977	16	1.9	16	93	0	53	41	0	3	54	1.16
43552059--43552089	16	1.9	16	93	0	53	41	0	3	54	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43552169--43552199	12	2.6	12	94	0	53	74	0	25	0	0.82
43553830--43553933	51	2.0	51	98	0	199	32	2	13	50	1.56
43555434--43555529	42	2.3	42	85	3	122	34	30	16	18	1.93
43560215--43560477	94	2.8	94	82	5	293	24	29	19	26	1.98
43560312--43560477	47	3.5	46	77	8	174	24	28	18	27	1.98
43563691--43563753	29	2.2	29	88	0	90	55	11	14	19	1.68
43564429--43564471	18	2.5	17	84	3	50	27	6	18	46	1.75
43564754--43564828	35	2.1	35	87	4	107	33	28	20	18	1.96
43575518--43575577	10	6.0	10	82	7	68	23	8	1	66	1.28
43594124--43594161	13	3.0	13	96	3	69	15	7	13	63	1.51
43594173--43594229	25	2.3	24	82	14	71	64	1	1	31	1.13
43594851--43594911	26	2.3	26	91	5	97	40	1	1	55	1.19
43594849--43594898	15	3.5	15	71	23	54	42	2	0	56	1.11
43596848--43596949	39	2.6	39	77	7	100	28	25	24	21	1.99
43596997--43597104	40	2.7	39	84	4	128	27	22	21	28	1.99
43596746--43597171	152	2.8	153	85	2	586	31	19	20	28	1.97
43597187--43597312	7	17.7	7	73	9	76	20	0	31	46	1.56
43597187--43597312	14	8.9	14	72	13	87	20	0	31	46	1.56
43597187--43597311	21	5.9	21	72	10	101	20	0	32	46	1.57
43597235--43597282	15	3.3	15	82	5	62	18	0	35	45	1.50
43600812--43601170	43	8.5	43	76	6	322	27	14	27	30	1.95
43600834--43601170	124	2.7	124	79	7	364	27	14	28	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43600834--43601155	81	3.9	81	72	10	258	27	14	27	29	1.95
43601498--43601535	18	2.2	18	85	4	51	21	23	2	52	1.59
43602318--43602373	27	2.1	27	86	0	76	19	5	41	33	1.74
43605137--43605176	19	2.1	19	90	0	62	35	35	7	22	1.82
43606285--43606334	23	2.2	21	77	19	55	36	18	18	28	1.94
43606277--43606368	24	3.8	24	85	5	87	35	18	21	23	1.95
43606290--43606368	24	3.3	24	85	5	97	39	16	22	21	1.92
43613674--43613785	48	2.4	45	80	12	120	31	16	27	24	1.97
43614496--43614527	16	2.0	16	100	0	64	37	6	25	31	1.81
43620241--43620290	26	1.9	26	83	0	64	12	16	4	68	1.35
43621616--43621930	92	3.4	91	85	3	425	25	24	18	32	1.97
43621601--43621956	184	1.9	184	85	3	493	25	23	18	31	1.98
43629929--43629972	18	2.4	18	85	14	56	31	0	22	45	1.53
43634539--43634580	21	2.0	21	100	0	84	61	4	14	19	1.49
43638080--43638245	90	1.8	90	82	7	212	25	24	21	28	1.99
43638174--43638277	42	2.5	42	80	0	118	27	27	16	27	1.97
43638249--43638421	48	3.6	48	81	3	195	29	31	15	23	1.95
43646794--43646893	41	2.5	42	85	4	109	55	15	4	26	1.58
43647431--43647543	42	2.7	42	87	0	145	31	30	14	23	1.94
43647334--43647577	132	1.8	132	79	3	285	27	27	18	27	1.98
43647571--43647676	48	2.2	48	81	0	113	27	27	20	24	1.99
43662868--43662892	11	2.3	11	100	0	50	28	0	0	72	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43666252--43666306	28	2.0	28	92	0	92	36	14	3	45	1.63
43668771--43668824	24	2.2	25	80	12	67	3	27	0	68	1.06
43688693--43688739	21	2.1	23	85	14	64	59	0	4	36	1.17
43689414--43689478	20	3.3	20	66	23	57	23	9	13	53	1.68
43692780--43692830	20	2.5	20	80	0	66	37	15	13	33	1.87
43693142--43693203	31	2.0	31	84	6	81	37	20	4	37	1.75
43706595--43706647	25	2.1	25	85	0	70	45	22	15	16	1.85
43709050--43709261	28	7.6	28	83	2	212	31	16	15	35	1.91
43709023--43709264	28	8.7	29	79	7	180	30	17	16	35	1.92
43719118--43719224	27	4.0	27	81	0	115	42	19	14	23	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144