genome.fa.s11.2.7.7.80.10.50.1000.31.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  31  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9399104--9399135	14	2.3	14	100	0	64	31	46	15	6	1.71
9402732--9402773	22	2.0	21	86	9	59	42	16	0	40	1.48
9403399--9403424	6	4.3	6	100	0	52	53	0	0	46	1.00
9410159--9410210	16	3.2	16	94	0	86	28	0	36	34	1.58
9410191--9410285	45	2.1	44	86	1	127	35	5	26	32	1.79
9410594--9410628	18	2.0	17	88	5	52	54	0	0	45	0.99
9410366--9410640	147	1.9	149	95	1	500	46	3	2	46	1.35
9410669--9410715	17	2.9	16	78	18	53	46	2	6	44	1.40
9410688--9410721	17	2.0	17	94	0	59	50	0	5	44	1.26
9410754--9410948	93	2.1	92	88	4	286	47	4	4	44	1.41
9413162--9413338	88	2.0	88	96	0	327	43	14	9	33	1.76
9415011--9415038	12	2.3	12	100	0	56	35	25	25	14	1.93
9416107--9416321	88	2.4	88	100	0	430	38	18	14	28	1.90
9416148--9416285	42	3.2	42	63	15	109	36	23	12	27	1.91
9417203--9417253	24	2.1	24	96	0	93	33	5	23	37	1.79
9418580--9418624	23	1.9	24	82	13	58	8	44	2	44	1.47
9418826--9418874	23	2.0	24	84	11	64	6	8	10	75	1.18
9426203--9426237	17	2.1	17	89	5	54	57	5	2	34	1.37
9429482--9429544	20	3.1	20	64	28	51	39	11	4	44	1.61
9430246--9430291	15	3.1	15	76	17	51	23	10	19	45	1.82
9430334--9430767	217	2.0	217	100	0	868	30	13	25	30	1.94
9430914--9431032	60	2.0	60	98	0	229	31	14	25	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9431975--9432001	11	2.5	11	100	0	54	22	7	18	51	1.70
9436070--9436167	43	2.3	42	84	5	117	23	31	9	35	1.86
9440966--9440992	12	2.2	12	100	0	54	14	7	29	48	1.71
9442858--9442891	16	2.1	16	88	0	50	50	14	17	17	1.79
9445692--9445732	21	2.0	21	90	0	64	29	21	29	19	1.98
9448579--9448670	46	2.1	43	88	11	136	32	14	22	30	1.93
9451646--9451863	108	2.0	108	100	0	436	27	15	11	46	1.79
9463658--9463766	34	3.3	33	80	14	134	54	1	0	43	1.17
9463682--9463735	17	3.3	17	70	17	51	55	1	0	42	1.10
9463685--9463741	15	3.7	15	71	17	53	54	3	0	42	1.17
9463769--9463838	21	3.1	22	74	14	63	48	0	0	51	1.00
9467766--9467836	30	2.4	30	90	0	115	25	16	21	36	1.94
9474586--9474627	21	2.0	21	100	0	84	38	9	23	28	1.86
9479364--9479591	6	38.0	6	99	0	447	50	17	0	32	1.46
9483439--9483480	6	7.2	6	91	2	68	64	0	35	0	0.94
9489885--9489932	3	16.0	3	100	0	96	33	0	0	66	0.92
9502384--9502412	5	6.0	5	92	8	51	41	0	0	58	0.98
9503157--9503203	24	2.0	24	84	16	62	31	0	17	51	1.46
9505006--9505078	29	2.6	29	86	2	94	31	24	17	26	1.97
9508753--9508797	15	2.9	16	78	15	51	22	20	0	57	1.40
9508739--9508824	43	2.0	43	90	0	136	22	20	2	54	1.56
9511687--9511748	25	2.4	26	74	15	67	74	0	22	3	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9520804--9520841	17	2.2	18	86	9	53	42	0	0	57	0.98
9520803--9520841	18	2.2	18	86	4	53	41	0	0	58	0.98
9520823--9520883	20	2.9	21	78	14	72	45	0	4	49	1.23
9520823--9520887	19	3.2	20	80	12	71	43	0	4	52	1.22
9524065--9524109	24	1.9	23	90	4	72	37	2	13	46	1.55
9527287--9527318	11	2.9	11	95	0	55	59	0	0	40	0.97
9530751--9530818	33	2.1	33	88	0	100	20	20	22	36	1.95
9531820--9531887	33	2.1	33	88	0	100	20	20	22	36	1.95
9539681--9539742	29	2.2	29	85	2	81	25	9	14	50	1.73
9539960--9540238	123	2.3	124	94	1	490	29	15	21	34	1.94
9540813--9540874	29	2.2	29	85	2	81	25	9	14	50	1.73
9541092--9541370	123	2.3	124	95	1	508	29	15	21	33	1.94
9543003--9543158	78	2.0	78	98	0	303	27	21	23	28	1.99
9543470--9543640	29	6.0	29	90	2	265	30	1	23	44	1.61
9545567--9545622	25	2.3	25	80	14	64	62	5	0	32	1.18
9545713--9545783	31	2.4	31	90	4	110	64	0	0	35	0.94
9545713--9545763	20	2.5	20	74	3	57	66	0	0	33	0.92
9545813--9545863	22	2.3	21	83	9	66	35	0	33	31	1.58
9545835--9545893	30	2.0	30	93	0	100	37	0	32	30	1.58
9545812--9545914	52	2.0	52	92	0	170	36	0	32	31	1.58
9545865--9545914	22	2.3	22	92	0	82	40	0	32	28	1.57
9547099--9547143	19	2.4	18	82	10	54	35	2	0	62	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9547084--9547153	26	2.6	26	79	6	77	30	1	0	68	0.98
9547074--9547156	19	4.5	19	67	15	50	30	1	1	67	1.06
9565976--9566037	9	6.9	9	88	0	88	33	25	11	29	1.91
9565976--9566037	18	3.4	18	93	0	97	33	25	11	29	1.91
9565976--9566037	27	2.3	27	94	0	106	33	25	11	29	1.91
9571336--9571382	21	2.2	22	92	3	78	21	19	38	21	1.94
9573603--9573997	109	3.6	109	93	0	639	33	18	15	31	1.92
9574106--9574141	18	2.1	17	89	5	54	72	8	5	13	1.27
9574604--9574675	16	4.8	16	72	16	55	56	4	2	36	1.33
9574605--9574769	14	12.0	13	69	16	59	60	6	2	31	1.34
9574704--9574767	3	21.3	3	77	6	67	64	6	0	29	1.18
9579499--9579542	21	2.2	20	88	12	63	36	0	0	63	0.95
9581849--9581894	23	2.0	22	83	4	56	47	8	4	39	1.54
9582188--9582219	16	2.0	17	88	11	50	28	12	6	53	1.62
9585909--9585951	18	2.4	18	88	7	61	46	0	0	53	1.00
9589320--9589364	23	1.9	24	86	4	65	40	6	2	51	1.41
9590031--9590062	6	5.3	6	100	0	64	34	0	0	65	0.93
9590309--9590353	23	2.0	23	86	0	63	33	0	6	60	1.23
9592243--9592345	25	4.2	23	79	14	100	34	20	27	17	1.95
9592244--9592338	49	1.9	50	87	10	142	34	21	26	17	1.95
9592254--9592362	25	4.4	25	75	10	98	35	21	26	16	1.94
9594436--9594560	47	2.6	47	83	3	135	24	25	21	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9594478--9594669	50	3.9	49	82	6	237	21	29	20	28	1.98
9594478--9594674	97	2.0	97	83	7	227	20	30	20	28	1.98
9595067--9595163	42	2.3	42	85	3	133	19	25	14	40	1.90
9597376--9597451	38	2.0	38	94	0	134	50	3	1	44	1.29
9597752--9597785	7	5.0	7	89	7	52	17	0	0	82	0.67
9597752--9597778	13	2.1	13	100	0	54	14	0	0	85	0.61
9599151--9599206	28	2.0	28	89	0	85	57	8	0	33	1.30
9602248--9602291	22	2.0	22	86	4	61	38	6	0	54	1.27
9602624--9603092	160	3.0	161	88	8	723	17	9	14	58	1.61
9602624--9603092	165	3.0	154	87	8	694	17	9	14	58	1.61
9603431--9603469	15	2.9	13	88	11	53	5	5	5	84	0.86
9607214--9607256	12	3.3	12	76	17	50	44	23	25	6	1.78
9614603--9614728	67	1.9	68	96	1	236	49	11	11	28	1.72
9616519--9616668	75	2.0	75	98	0	291	36	10	16	36	1.83
9624005--9624032	11	2.5	11	100	0	56	7	0	7	85	0.73
9633456--9633497	6	7.0	6	100	0	84	33	0	0	66	0.92
9635804--9636218	106	3.9	104	80	7	412	26	21	17	34	1.95
9642039--9642091	25	2.1	25	82	6	63	52	5	1	39	1.36
9643792--9643852	31	2.0	31	90	0	95	50	6	19	22	1.70
9643797--9643863	31	2.2	31	86	0	89	50	10	16	22	1.75
9644617--9644651	18	1.9	18	88	11	54	48	2	0	48	1.16
9651102--9651146	3	15.0	3	100	0	90	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9657114--9657177	15	3.8	16	73	26	60	43	45	1	9	1.45
9657099--9657176	37	2.1	37	97	0	147	42	43	2	11	1.54
9670354--9670644	46	6.7	45	72	13	173	30	20	21	26	1.98
9670573--9671040	87	5.4	87	97	0	864	31	22	22	23	1.99
9676332--9676443	56	2.0	56	98	0	215	35	16	28	18	1.93
9684130--9684270	59	2.4	59	96	0	255	37	17	25	19	1.93
9685445--9685735	46	6.7	45	72	13	173	30	20	21	26	1.98
9685488--9685895	44	9.6	43	70	13	222	30	21	22	25	1.99
9685615--9685907	87	3.4	83	85	7	338	29	22	22	25	1.99
9693016--9693047	16	2.0	16	93	0	55	21	3	0	75	0.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144