genome.fa.s11.2.7.7.80.10.50.1000.78.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  78  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23522029--23522152	43	2.9	44	82	2	155	25	17	25	31	1.97
23525542--23525576	16	2.2	16	100	0	70	17	17	22	42	1.88
23528851--23528892	21	2.0	21	90	0	66	71	0	14	14	1.15
23528851--23528892	7	6.0	7	79	20	52	71	0	14	14	1.15
23530197--23531096	44	20.4	44	81	7	948	31	13	23	31	1.93
23530171--23531067	221	4.1	221	86	5	1088	30	13	23	32	1.93
23531983--23532030	25	1.9	25	83	8	62	12	4	6	77	1.11
23533276--23533468	94	2.0	94	97	1	368	36	12	4	47	1.61
23533695--23533912	110	2.0	110	98	0	418	33	11	15	38	1.84
23534900--23534934	16	2.2	16	100	0	70	17	17	22	42	1.88
23538209--23538250	21	2.0	21	90	0	66	71	0	14	14	1.15
23538209--23538250	7	6.0	7	79	20	52	71	0	14	14	1.15
23539555--23540239	44	15.4	44	80	9	665	32	13	23	31	1.93
23539555--23540239	132	5.1	132	83	5	792	32	13	23	31	1.93
23539555--23540237	88	7.7	88	83	6	745	32	13	23	31	1.93
23541126--23541173	25	1.9	25	83	8	62	12	4	6	77	1.11
23541828--23541899	24	2.9	25	80	12	69	40	6	4	48	1.49
23543479--23543508	3	10.0	3	100	0	60	66	0	0	33	0.92
23543581--23543624	20	2.3	19	84	4	52	54	6	0	38	1.27
23546880--23546935	23	2.4	24	87	3	78	19	16	10	53	1.71
23549673--23549736	29	2.2	29	83	5	76	15	26	34	23	1.95
23558104--23558216	57	2.0	57	94	0	199	38	18	7	34	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23559906--23559960	26	2.1	26	86	6	76	43	7	18	30	1.77
23559916--23559976	26	2.3	26	83	5	70	42	4	22	29	1.75
23561301--23561351	24	2.1	24	81	0	57	19	0	27	52	1.46
23568282--23568327	22	2.1	21	84	4	56	6	41	23	28	1.79
23572528--23572565	18	2.1	18	100	0	76	52	0	5	42	1.24
23582999--23583027	14	2.0	15	93	6	51	51	27	0	20	1.47
23583180--23583225	23	2.0	23	91	0	74	8	45	26	19	1.79
23584235--23584275	16	2.7	15	80	3	55	31	7	0	60	1.24
23588888--23588928	13	3.2	13	82	3	57	82	9	2	4	0.89
23588969--23588993	8	3.1	8	100	0	50	76	0	24	0	0.80
23591229--23591938	132	5.4	132	82	5	837	28	19	23	28	1.99
23592130--23592305	50	3.5	50	72	9	169	35	23	16	25	1.95
23592098--23592387	100	2.9	100	78	3	314	33	23	17	24	1.96
23592835--23592863	14	2.0	15	93	6	51	51	27	0	20	1.47
23597818--23597890	37	1.9	37	84	13	96	31	21	4	42	1.72
23597878--23597921	23	1.9	22	82	17	54	36	25	0	38	1.56
23597960--23598057	45	2.2	45	90	0	151	34	20	16	28	1.94
23598065--23598247	51	3.6	50	79	4	215	31	27	17	23	1.97
23598063--23598247	101	1.8	102	91	3	311	31	27	17	23	1.97
23607512--23607554	22	2.0	21	82	13	52	41	0	0	58	0.98
23620281--23620343	27	2.3	27	83	0	81	41	23	17	17	1.90
23620380--23620416	19	2.0	19	94	5	67	43	16	13	27	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23622197--23622259	21	3.0	21	88	2	81	33	31	4	30	1.78
23629143--23629187	22	2.0	22	83	8	56	42	0	4	53	1.21
23629308--23629348	11	3.7	11	90	6	57	68	0	0	31	0.90
23632885--23633047	45	3.6	44	78	10	177	42	12	21	23	1.87
23634230--23634263	13	2.7	13	90	4	52	29	2	8	58	1.43
23641254--23641522	137	2.0	138	85	2	371	33	28	19	18	1.96
23649852--23649887	17	2.2	16	90	9	56	63	5	0	30	1.17
23651491--23651812	27	11.9	27	86	4	409	42	18	18	19	1.89
23658975--23659080	44	2.5	44	84	6	128	50	0	20	27	1.54
23660048--23660149	50	2.0	50	98	0	195	28	19	21	30	1.98
23664121--23664235	42	2.7	43	93	2	196	52	2	23	21	1.60
23674490--23674545	29	2.0	28	85	3	76	26	7	14	51	1.67
23675823--23675874	19	2.7	19	91	5	79	28	19	5	46	1.73
23682566--23682825	45	5.5	45	75	11	252	33	16	19	31	1.94
23682417--23682684	147	1.8	146	86	2	394	34	17	16	31	1.92
23682496--23682785	51	5.9	51	78	9	352	35	17	17	30	1.93
23682496--23682785	147	2.0	144	81	8	343	35	17	17	30	1.93
23682515--23683015	192	2.6	192	81	6	536	34	16	18	30	1.94
23682515--23682844	96	3.4	96	94	0	545	34	16	18	30	1.93
23682945--23683122	44	4.0	44	78	2	178	32	16	21	30	1.95
23684546--23684627	26	3.2	26	62	25	66	23	14	29	32	1.94
23684541--23684732	51	3.8	50	81	3	206	23	16	27	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23684736--23684822	45	1.9	45	92	0	147	24	16	25	34	1.95
23688997--23689042	21	2.2	21	88	3	67	19	0	19	60	1.36
23688997--23689043	20	2.3	21	85	7	62	19	0	21	59	1.38
23714560--23714584	6	4.2	6	100	0	50	52	0	16	32	1.44
23730245--23730278	17	1.9	18	94	5	61	58	0	0	41	0.98
23733502--23733530	5	5.8	5	100	0	58	58	0	0	41	0.98
23736573--23736610	18	2.1	19	85	5	51	18	31	13	36	1.89
23740815--23740843	2	14.5	2	100	0	58	0	48	0	51	1.00
23744096--23744120	13	1.9	13	100	0	50	36	0	0	64	0.94
23745614--23745779	83	2.0	83	98	0	323	32	12	22	31	1.92
23752877--23752925	23	2.1	23	92	0	80	26	20	12	40	1.87
23762080--23762328	50	4.8	50	84	3	282	20	28	23	26	1.99
23762079--23762328	100	2.4	104	88	5	355	21	28	23	26	1.99
23768500--23768615	58	2.0	58	98	0	223	38	17	4	39	1.69
23768852--23768998	51	2.7	54	80	9	176	23	27	23	25	2.00
23772005--23772423	27	15.5	27	83	5	488	42	17	18	20	1.89
23783765--23783814	22	2.3	21	80	10	55	22	14	20	44	1.86
23783954--23784010	6	9.7	6	84	3	62	21	10	14	54	1.69
23783935--23783998	18	3.6	18	78	4	58	21	12	14	51	1.75
23783954--23784038	12	7.2	12	74	15	61	18	10	15	55	1.68
23785284--23785330	21	2.2	22	84	3	60	68	4	19	8	1.33
23794545--23794580	18	2.0	18	88	0	54	36	25	19	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23797270--23797294	13	1.9	13	100	0	50	60	8	0	32	1.26
23797313--23797530	13	17.7	13	73	18	155	48	5	7	38	1.56
23797313--23797552	27	9.8	26	72	19	135	47	6	7	38	1.56
23797315--23797417	40	2.6	40	90	0	161	50	4	5	38	1.48
23797391--23797481	35	2.6	34	86	6	121	46	5	7	40	1.56
23797315--23797554	48	4.9	50	71	14	110	47	6	6	38	1.56
23797378--23797552	83	2.1	83	100	0	350	46	5	7	40	1.56
23797453--23797495	14	3.1	14	83	6	61	44	2	6	46	1.43
23797474--23797551	35	2.2	36	82	11	99	44	6	7	41	1.58
23809758--23809827	29	2.4	30	87	4	106	20	31	8	40	1.82
23809775--23809974	29	6.9	29	80	10	174	22	26	14	37	1.92
23809816--23810002	29	6.4	29	82	4	126	22	26	13	37	1.92
23809846--23810011	58	2.8	57	76	8	174	21	25	15	37	1.92
23814500--23814544	21	2.1	22	84	12	58	66	8	11	13	1.44
23822361--23822405	22	2.1	21	84	12	56	13	15	0	71	1.15
23822925--23822955	14	2.2	14	94	0	53	41	3	0	54	1.16
23826029--23826111	26	3.3	26	68	19	84	10	10	37	40	1.75
23826023--23826135	50	2.3	49	93	4	199	15	9	34	40	1.80
23826372--23826408	3	12.3	3	100	0	74	67	0	0	32	0.91
23830717--23830771	21	2.7	21	82	2	67	29	1	1	67	1.11
23831944--23832033	34	2.6	34	89	0	126	45	14	6	33	1.71
23834268--23834304	19	2.0	19	89	5	58	40	0	2	56	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23834273--23834316	19	2.2	20	84	11	56	40	0	2	56	1.11
23840616--23840756	43	3.3	43	90	0	228	33	26	15	24	1.95
23842389--23842416	14	2.0	14	100	0	56	14	0	0	85	0.59
23842541--23842584	15	3.0	15	87	9	56	0	13	4	81	0.83
23848669--23848706	7	5.4	7	81	12	51	71	0	13	15	1.16
23848671--23848722	14	3.5	14	76	23	61	71	0	13	15	1.15
23848675--23848722	17	3.0	17	80	19	59	68	0	14	16	1.21
23849967--23850712	129	5.8	129	92	0	1224	32	19	23	24	1.98
23851503--23851530	13	2.2	13	100	0	56	14	0	0	85	0.59
23863228--23863307	40	2.0	40	87	0	115	37	2	22	37	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144