genome.fa.s11.2.7.7.80.10.50.1000.42.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  42  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12770184--12770218	8	4.2	8	85	7	52	37	0	0	62	0.95
12770148--12770241	45	2.0	48	84	10	124	43	2	1	53	1.19
12792837--12792917	30	2.8	30	79	3	85	33	6	2	58	1.36
12801067--12801109	20	2.0	20	82	8	50	46	0	6	46	1.30
12805427--12805495	34	2.0	34	100	0	138	59	11	17	11	1.61
12812697--12812727	2	15.5	2	100	0	62	0	51	0	48	1.00
12815270--12815382	57	2.0	57	94	0	199	35	13	17	33	1.89
12835612--12835697	44	2.0	44	86	9	122	43	1	0	55	1.07
12839569--12839614	23	2.0	23	100	0	92	34	17	34	13	1.88
12841245--12841453	80	2.7	74	74	13	188	43	5	10	40	1.62
12843362--12843398	19	1.9	19	94	0	65	35	0	18	45	1.50
12843619--12843822	41	5.0	41	95	0	363	29	19	28	23	1.98
12844013--12844130	37	3.5	36	78	10	110	27	10	27	34	1.89
12849767--12849814	19	2.5	20	77	12	57	31	4	0	64	1.12
12849856--12849906	19	2.6	19	84	9	59	37	0	3	58	1.16
12850937--12850961	5	5.0	5	100	0	50	0	0	20	80	0.72
12862717--12863370	328	2.0	328	94	0	1146	37	17	14	31	1.89
12870346--12870401	19	2.8	19	81	5	67	35	1	5	57	1.32
12870339--12870407	19	3.6	19	75	9	61	33	1	5	59	1.30
12904410--12904440	9	3.3	9	95	4	53	32	0	0	67	0.91
12904413--12904441	10	3.0	10	95	5	51	37	0	0	62	0.96
12910147--12910336	94	2.0	94	95	0	344	33	24	12	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12910713--12910772	30	2.0	31	86	3	86	20	40	0	40	1.52
12912586--12912635	22	2.4	20	83	12	57	36	0	2	62	1.07
12912579--12912678	39	2.6	37	76	9	94	39	0	4	57	1.18
12912601--12912776	60	2.9	61	81	8	182	42	0	3	53	1.24
12912866--12912962	44	2.2	45	80	12	110	38	20	5	36	1.75
12912944--12912979	16	2.2	16	90	0	54	30	25	0	44	1.54
12922591--12922625	18	2.0	17	88	5	52	45	0	0	54	0.99
12922735--12922769	18	2.0	17	88	5	52	45	0	0	54	0.99
12922931--12923025	45	2.1	45	86	1	129	33	26	5	34	1.79
12923006--12923057	16	3.2	16	91	0	77	36	34	0	28	1.58
12923325--12923351	11	2.5	11	100	0	54	77	14	0	7	0.97
12923901--12923937	19	1.9	19	88	0	56	62	2	2	32	1.23
12924393--12924449	21	2.7	21	84	10	64	24	1	10	63	1.36
12924422--12924479	22	2.6	23	83	2	73	43	0	5	51	1.24
12924400--12924477	22	3.6	20	69	19	50	37	1	6	55	1.34
12924787--12924817	3	10.3	3	100	0	62	35	0	0	64	0.94
12930003--12930367	181	2.0	181	92	1	615	40	9	12	37	1.75
12931553--12931592	9	4.4	9	84	12	55	55	7	5	32	1.50
12931553--12931592	18	2.2	18	95	0	71	55	7	5	32	1.50
12931730--12931794	20	3.3	19	77	14	60	67	1	1	29	1.09
12932534--12932587	27	2.0	27	85	3	74	42	9	18	29	1.81
12938506--12938858	184	1.9	184	97	0	661	33	9	21	34	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12939898--12940092	41	4.8	41	80	3	214	23	20	25	31	1.98
12939898--12940092	82	2.4	82	84	1	248	23	20	25	31	1.98
12940879--12940921	7	6.1	7	83	0	50	25	0	46	27	1.53
12943628--12943656	12	2.3	13	94	5	51	13	13	10	62	1.55
12945781--12946047	42	6.3	43	74	10	199	24	16	27	30	1.97
12945781--12946047	43	6.3	43	75	10	208	24	16	27	30	1.97
12948164--12948420	90	2.9	90	92	3	430	32	7	12	47	1.69
12950238--12950288	18	2.9	17	75	16	59	45	0	0	54	0.99
12958727--12958846	60	2.0	60	100	0	240	46	15	11	26	1.79
12965380--12965461	27	2.7	32	85	12	111	19	24	28	28	1.99
12965485--12965611	33	3.6	33	74	19	112	20	20	26	32	1.97
12965408--12965659	74	3.3	74	85	6	301	21	20	26	30	1.98
12967474--12967535	24	2.5	25	78	5	81	35	16	25	22	1.94
12967718--12967779	25	2.5	25	80	12	74	40	12	24	22	1.89
12969800--12969948	73	2.0	73	81	2	174	26	34	12	25	1.92
12972901--12972929	15	1.9	15	100	0	58	58	6	6	27	1.50
12982573--12982711	41	3.4	41	87	3	192	25	20	14	40	1.90
12991882--12992202	108	3.0	107	92	2	502	35	17	16	30	1.92
12992595--12992723	51	2.5	51	75	18	135	66	3	4	25	1.25
12996677--12996931	95	2.7	95	85	2	327	41	2	16	38	1.62
12997232--12997557	163	2.0	163	100	0	652	48	4	6	40	1.49
12997776--12997802	11	2.5	11	100	0	54	37	7	0	55	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12997968--12998089	39	3.0	40	84	4	156	22	25	22	29	1.99
12998494--12998848	121	2.9	121	85	3	473	35	10	15	38	1.82
13007623--13007674	26	1.9	26	88	7	77	40	0	55	3	1.18
13007901--13007926	3	8.7	3	100	0	52	34	30	0	34	1.58
13017921--13018055	67	2.0	67	91	0	216	27	29	19	23	1.98
13018174--13018320	57	2.5	59	83	8	183	22	23	21	31	1.98
13024338--13024364	2	13.5	2	100	0	54	51	0	0	48	1.00
13029662--13029709	15	3.2	15	74	11	53	29	20	8	41	1.81
13030730--13030799	35	2.0	36	94	2	124	15	35	24	24	1.94
13033431--13033472	22	2.0	22	85	4	59	16	9	14	59	1.60
13042374--13042463	23	3.9	23	82	0	81	20	24	5	50	1.69
13042377--13042467	46	2.0	46	84	0	119	20	25	5	48	1.71
13046881--13046974	23	4.1	23	83	0	125	23	25	3	47	1.66
13054745--13054825	11	7.5	11	77	18	82	37	1	1	60	1.13
13054740--13054823	12	6.6	12	71	21	64	34	1	1	63	1.10
13054745--13054845	51	2.0	52	94	2	177	38	0	0	59	1.11
13054775--13054852	11	7.4	11	75	17	67	38	0	1	60	1.05
13054775--13054873	22	4.7	22	74	18	68	39	0	1	59	1.04
13054796--13054867	31	2.4	31	86	9	103	38	0	0	61	0.96
13054835--13054874	21	1.9	21	94	0	71	40	0	0	60	0.97
13054756--13054867	51	2.2	49	86	9	138	38	0	0	60	1.03
13054834--13054881	21	2.2	20	82	13	60	35	0	4	60	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13060771--13060820	25	2.0	25	92	0	82	50	0	2	48	1.12
13060975--13061010	18	1.9	19	94	5	65	36	5	11	47	1.63
13064698--13064985	107	2.7	107	83	2	355	53	8	11	27	1.65
13064692--13065014	107	3.0	106	79	7	343	53	8	11	26	1.64
13066959--13067020	9	6.9	9	80	7	72	24	32	0	43	1.54
13071540--13071579	21	2.0	21	90	5	64	42	7	0	50	1.30
13079552--13079594	21	2.0	23	81	9	54	30	20	16	32	1.95
13095576--13095684	53	2.1	53	86	3	150	7	24	10	57	1.57
13095593--13095699	53	2.0	54	98	1	207	5	20	14	58	1.56
13097978--13098055	26	3.3	24	67	22	58	43	1	0	55	1.08
13097910--13098042	56	2.3	57	82	10	155	43	0	3	53	1.16
13098000--13098032	11	3.0	11	91	8	50	42	0	0	57	0.98
13098138--13098244	45	2.5	43	85	8	132	32	28	5	32	1.81
13098224--13098276	16	3.3	16	94	0	97	20	33	5	39	1.76
13108328--13108360	11	3.1	11	86	4	50	33	0	0	66	0.92
13108851--13108911	10	5.9	10	76	5	59	21	3	3	72	1.14
13109199--13109245	20	2.3	21	78	14	53	21	12	8	57	1.62
13109376--13109583	20	10.4	20	69	12	97	21	18	7	52	1.70
13109400--13109455	22	2.7	19	84	15	60	21	17	0	60	1.36
13109616--13109664	20	2.5	20	86	3	64	16	12	14	57	1.66
13109719--13109770	20	2.6	19	75	6	50	23	11	7	57	1.59
13110435--13110536	20	5.1	19	76	7	69	18	12	6	61	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13110445--13110534	20	4.4	20	75	17	78	21	14	5	58	1.56
13115373--13115404	14	2.3	14	100	0	64	31	46	15	6	1.71
13126553--13126584	5	6.6	5	96	3	57	59	0	0	40	0.97
13131355--13131382	3	9.3	3	100	0	56	35	0	0	64	0.94
13132415--13132486	36	2.0	37	86	2	101	40	22	9	27	1.85
13132521--13132553	6	5.5	6	100	0	66	33	51	0	15	1.43
13138409--13138736	163	2.0	163	97	0	620	35	18	16	30	1.93
13142260--13142317	9	6.4	9	82	7	64	36	22	15	25	1.94
13142260--13142317	18	3.2	18	85	0	80	36	22	15	25	1.94
13146374--13146411	20	1.9	20	100	0	76	13	31	7	47	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144