genome.fa.s11.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  108  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33167702--33168656	496	1.9	495	83	4	1251	27	16	21	34	1.95
33168591--33168734	72	2.0	72	91	0	234	33	7	15	43	1.76
33168663--33169416	302	2.5	302	83	3	910	28	15	20	34	1.94
33169739--33169763	13	1.9	13	100	0	50	32	4	24	40	1.73
33171720--33171749	13	2.2	14	94	5	53	46	0	0	53	1.00
33176743--33176767	13	1.9	13	100	0	50	32	4	24	40	1.73
33178852--33179369	286	1.8	284	87	4	783	27	20	21	30	1.98
33178953--33179980	512	2.0	511	92	0	1727	29	17	19	33	1.95
33180057--33181079	512	2.0	510	92	2	1687	29	17	20	33	1.95
33180565--33182177	586	2.7	583	89	2	2336	27	17	20	33	1.96
33182196--33183543	303	4.6	298	81	6	1350	28	17	20	33	1.95
33181419--33182935	781	1.9	766	82	5	1722	27	16	21	34	1.95
33182364--33183501	283	3.9	278	81	8	1177	27	17	22	32	1.96
33183380--33183748	193	1.9	195	83	3	485	25	17	19	38	1.92
33183791--33185145	285	4.9	276	80	6	1030	27	16	21	34	1.95
33184071--33185115	285	3.7	284	84	3	1278	26	17	22	33	1.96
33186314--33186748	27	16.2	26	85	7	475	20	17	20	42	1.90
33195518--33195561	18	2.5	18	85	3	54	18	27	38	15	1.91
33202643--33202691	21	2.3	21	89	0	71	16	34	24	24	1.95
33216947--33216982	18	1.9	19	88	5	56	58	8	16	16	1.61
33218278--33218481	41	5.0	41	80	2	167	19	25	16	38	1.92
33218277--33218481	82	2.5	82	80	2	250	20	25	16	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33221601--33221625	9	2.8	9	100	0	50	12	24	20	44	1.85
33223414--33223443	15	2.0	15	93	0	51	36	6	33	23	1.81
33240129--33240167	16	2.5	15	83	8	51	46	0	0	53	1.00
33245829--33245973	24	6.0	24	73	8	123	33	20	28	16	1.95
33255055--33255090	12	2.9	12	95	4	63	16	22	0	61	1.35
33270916--33270956	12	3.2	13	83	12	50	43	2	19	34	1.64
33271657--33271735	18	4.4	18	77	6	70	48	16	3	31	1.64
33271674--33271744	36	2.0	36	82	0	88	46	18	5	29	1.72
33272053--33272108	22	2.5	22	88	2	85	46	16	8	28	1.77
33273627--33273676	24	2.1	24	88	0	73	40	6	0	54	1.25
33273636--33273689	24	2.2	24	86	0	72	40	7	1	50	1.41
33274652--33274763	55	2.0	55	98	0	215	42	27	4	25	1.74
33279154--33279196	21	2.0	21	86	4	59	30	6	16	46	1.73
33286980--33287118	50	2.8	50	70	4	127	29	20	25	24	1.99
33286980--33287168	100	1.9	99	80	6	220	30	19	23	26	1.98
33296167--33296213	22	2.1	22	96	0	85	42	10	4	42	1.59
33300112--33300146	3	11.7	3	100	0	70	68	0	0	31	0.90
33300561--33300614	27	2.0	27	96	0	99	22	42	0	35	1.54
33300566--33300624	27	2.2	27	84	0	73	18	50	0	30	1.47
33304854--33304935	33	2.4	35	86	11	118	46	2	2	48	1.28
33314792--33314853	21	3.0	21	82	0	70	40	16	25	17	1.90
33315077--33315299	35	6.5	34	81	3	259	40	17	22	19	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33315077--33315299	69	3.2	69	92	0	367	40	17	22	19	1.91
33323789--33324035	34	7.2	34	83	3	307	40	16	23	19	1.91
33323802--33324036	35	6.8	34	84	3	292	39	16	24	20	1.92
33323802--33324035	69	3.4	69	95	1	407	38	16	24	20	1.92
33324242--33324297	18	3.3	18	76	19	75	35	12	7	44	1.70
33324243--33324307	32	2.0	32	100	0	130	38	12	6	43	1.67
33324250--33324303	17	3.3	17	75	19	69	42	12	5	38	1.67
33324325--33324359	14	2.6	14	95	4	63	37	14	5	42	1.69
33326661--33326775	6	19.2	6	100	0	230	50	0	0	49	1.00
33326887--33326934	3	16.0	3	77	0	51	58	6	4	31	1.42
33329161--33329190	13	2.3	13	94	0	51	33	13	3	50	1.58
33333622--33333825	86	2.4	86	87	0	282	30	30	16	22	1.96
33333622--33333826	43	4.8	43	83	1	241	30	30	16	22	1.96
33334198--33334247	21	2.4	21	82	0	55	2	42	16	40	1.59
33340506--33340577	29	2.5	30	76	19	80	50	1	2	45	1.25
33348354--33348379	5	5.2	5	100	0	52	23	19	19	38	1.93
33352445--33352483	6	6.5	6	100	0	78	33	0	0	66	0.92
33363976--33364004	15	1.9	15	100	0	58	20	0	24	55	1.44
33364108--33364199	17	5.4	16	68	23	55	39	2	1	57	1.18
33376978--33377065	43	2.0	44	97	2	169	44	19	9	27	1.80
33377587--33377703	41	2.8	42	76	12	118	32	29	18	19	1.96
33377748--33377900	64	2.3	67	85	6	197	41	15	8	34	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33377931--33378055	60	2.1	60	80	8	139	41	15	4	39	1.65
33382500--33382543	18	2.4	18	81	7	54	70	0	2	27	0.99
33390358--33390391	18	1.9	18	88	5	52	26	14	0	58	1.36
33402056--33402082	13	2.1	13	100	0	54	29	7	22	40	1.81
33401965--33402199	117	2.0	117	97	0	443	30	28	14	26	1.95
33402173--33402238	13	5.1	13	84	0	96	30	6	27	36	1.81
33402407--33402468	30	2.1	29	82	11	72	46	0	3	50	1.17
33412693--33413011	41	7.6	42	80	8	355	21	17	25	36	1.95
33412686--33413009	84	3.8	84	87	4	422	22	16	25	35	1.95
33412696--33413009	125	2.5	125	80	8	359	21	17	24	35	1.95
33421661--33422072	84	4.9	84	90	2	576	21	17	25	35	1.95
33421668--33422115	44	10.5	44	80	10	425	21	18	25	35	1.95
33437215--33437276	30	2.1	29	82	11	72	46	0	3	50	1.17
33441830--33441878	23	2.1	22	85	7	62	69	6	0	24	1.11
33441944--33441985	12	3.6	12	80	6	59	38	23	14	23	1.92
33441946--33441993	23	2.1	23	100	0	96	39	27	12	20	1.89
33443589--33443620	4	8.0	4	100	0	64	25	0	0	75	0.81
33444573--33444611	18	2.2	18	100	0	78	43	15	5	35	1.69
33445662--33445707	18	2.8	18	84	15	64	0	30	41	28	1.56
33447481--33447523	13	3.1	14	84	12	54	60	0	0	39	0.97
33450002--33450058	3	18.7	3	89	3	87	63	0	3	33	1.12
33450060--33450086	3	9.0	3	100	0	54	33	0	33	33	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33451799--33451835	12	2.9	13	81	18	51	54	5	0	40	1.24
33452554--33452587	16	2.2	16	94	5	61	41	20	5	32	1.76
33452798--33453324	89	5.9	89	95	0	894	29	25	23	21	1.99
33452778--33453394	267	2.3	265	85	4	889	30	24	23	21	1.99
33453661--33453889	44	5.2	44	73	10	132	31	17	22	27	1.97
33453965--33454116	44	3.5	44	80	8	150	27	17	24	30	1.97
33453515--33454118	312	1.9	312	88	2	919	31	18	21	28	1.97
33454230--33454328	41	2.3	41	82	6	108	28	18	25	28	1.98
33454218--33454328	45	2.6	44	79	9	122	27	19	23	28	1.98
33454460--33454552	45	2.1	44	81	2	105	30	19	22	27	1.98
33454214--33454704	228	2.2	224	84	3	619	30	19	21	28	1.97
33469588--33469629	17	2.5	17	80	0	57	57	2	4	35	1.33
33470337--33470362	11	2.4	11	100	0	52	61	0	0	38	0.96
33472183--33472215	16	2.1	16	88	11	50	45	3	3	48	1.33
33482980--33483079	42	2.4	42	93	0	164	38	15	27	20	1.92
33489901--33489954	16	3.6	16	69	23	53	53	1	1	42	1.22
33504650--33505148	62	7.8	63	79	9	506	48	10	15	25	1.76
33504712--33505105	136	3.0	134	79	8	407	47	11	14	26	1.78
33504901--33505043	72	2.0	72	83	8	184	44	11	13	30	1.79
33504650--33505155	126	3.9	127	79	9	499	49	10	15	25	1.76
33505541--33505571	6	5.2	6	100	0	62	48	0	51	0	1.00
33506742--33507029	91	3.2	91	83	1	371	32	27	14	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33516283--33516317	4	9.0	4	87	6	54	22	2	0	74	0.95
33516510--33516629	45	2.7	43	90	7	188	65	10	15	9	1.48
33522492--33522550	29	2.1	27	81	12	66	23	6	1	67	1.24
33535783--33535834	18	2.8	19	80	8	63	36	11	5	46	1.64
33542902--33542943	21	2.0	22	90	4	68	38	26	4	30	1.77
33545015--33545164	42	3.6	41	86	8	187	28	24	16	30	1.96
33555338--33555375	19	2.0	19	100	0	76	52	21	26	0	1.47
33571194--33571403	43	4.9	43	89	1	253	30	28	18	22	1.97
33571196--33571446	43	5.9	42	85	5	227	30	29	17	22	1.97
33571196--33571464	86	3.1	85	82	7	260	31	28	17	22	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144