genome.fa.s11.2.7.7.80.10.50.1000.127.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  127  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39472251--39472437	41	4.6	41	94	0	320	29	23	22	23	1.99
39472251--39472490	123	2.0	123	80	5	279	29	22	24	23	1.99
39483702--39483737	15	2.3	16	90	4	56	69	0	22	8	1.15
39487261--39487285	7	3.6	7	100	0	50	16	0	40	44	1.47
39499450--39499477	7	4.0	7	100	0	56	42	0	14	42	1.45
39500496--39500536	20	2.0	20	90	0	64	43	0	0	56	0.99
39514651--39514719	31	2.2	31	89	0	102	46	15	7	30	1.73
39533035--39533215	91	2.0	92	88	1	274	32	23	14	30	1.94
39533359--39533588	92	2.5	92	84	2	293	29	21	15	33	1.95
39535435--39535479	21	2.2	21	84	4	56	48	2	0	48	1.13
39543063--39543114	24	2.2	24	89	0	77	36	3	9	50	1.54
39565573--39565711	54	2.5	53	89	5	206	52	0	21	25	1.52
39565764--39565907	44	3.2	43	87	4	180	47	4	22	25	1.69
39566064--39566208	44	3.3	43	79	8	141	26	18	4	51	1.64
39566267--39566397	52	2.5	52	92	1	217	25	19	1	52	1.55
39569275--39569761	108	4.5	111	84	8	552	29	17	15	37	1.90
39575093--39575178	25	3.5	24	84	6	100	17	15	27	39	1.89
39575165--39575229	25	2.6	25	80	0	76	27	15	27	29	1.96
39600520--39600560	17	2.4	18	80	12	50	51	0	19	29	1.47
39603362--39603403	22	1.9	22	100	0	84	23	14	23	38	1.92
39605740--39605778	20	1.9	21	94	5	71	35	25	0	38	1.56
39606022--39606070	21	2.5	19	83	9	62	34	8	2	55	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39616327--39616413	38	2.2	40	87	6	124	54	6	2	36	1.40
39616441--39616465	13	1.9	13	100	0	50	20	0	32	48	1.50
39623507--39623565	31	1.9	31	89	0	91	47	13	6	32	1.69
39625523--39625549	6	4.5	6	100	0	54	33	14	0	51	1.43
39625503--39625541	16	2.4	16	86	0	51	25	17	2	53	1.56
39625790--39625821	6	5.3	6	100	0	64	34	15	0	50	1.45
39629069--39629126	16	3.5	15	81	13	62	72	3	3	20	1.14
39629165--39629201	19	1.9	19	94	0	65	62	2	2	32	1.23
39629191--39629241	17	2.8	18	75	19	52	62	3	7	25	1.40
39629895--39629971	40	1.9	40	86	0	109	42	3	28	24	1.72
39634452--39635018	284	2.0	284	97	0	1062	31	22	13	32	1.92
39637833--39637874	21	2.0	21	85	0	57	28	16	19	35	1.93
39640732--39640806	29	2.6	29	89	2	123	40	5	22	32	1.77
39643903--39643977	21	3.3	23	75	17	61	66	0	0	33	0.92
39643903--39643964	21	2.9	22	83	7	65	64	0	0	35	0.94
39643918--39643982	24	2.8	21	75	15	58	67	0	0	32	0.91
39644164--39644211	22	2.1	23	84	3	62	52	6	0	41	1.27
39650411--39650488	39	2.0	41	92	5	133	39	24	2	33	1.69
39652604--39652667	29	2.2	29	91	0	101	28	3	35	32	1.73
39652617--39652674	29	2.0	29	100	0	116	27	3	37	31	1.73
39657483--39657644	54	3.1	53	79	7	186	53	7	2	37	1.43
39657550--39657627	18	4.3	18	66	23	56	52	7	1	38	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39662107--39662151	16	2.7	17	82	6	56	40	0	0	60	0.97
39662135--39662202	11	6.4	11	74	17	54	35	2	0	61	1.11
39662118--39662211	41	2.3	40	91	5	163	32	2	0	64	1.05
39662144--39662217	30	2.4	31	82	11	89	36	2	0	60	1.11
39662185--39662224	21	1.9	21	89	0	62	37	2	0	60	1.11
39662184--39662236	21	2.5	20	79	14	52	35	1	3	58	1.27
39669188--39669364	27	6.5	27	78	6	144	29	28	15	25	1.96
39683380--39683482	23	4.5	23	92	0	170	29	13	19	37	1.90
39683380--39683482	46	2.2	46	96	0	188	29	13	19	37	1.90
39689831--39689965	40	3.3	40	82	5	121	24	15	27	32	1.95
39690717--39690789	23	3.2	23	92	0	119	30	12	17	39	1.87
39690717--39690945	46	4.8	46	83	10	269	31	12	17	38	1.87
39690757--39690822	33	2.0	33	96	0	123	31	9	19	39	1.83
39690790--39690945	23	6.8	23	88	2	242	31	12	17	38	1.87
39692158--39692257	27	3.7	27	80	5	112	19	29	18	34	1.95
39698114--39698138	12	2.1	12	100	0	50	24	8	16	52	1.70
39708919--39708976	22	2.6	22	88	2	89	31	29	0	39	1.57
39708946--39709059	51	2.2	51	95	0	201	28	24	0	46	1.53
39710203--39710228	7	3.7	7	100	0	52	26	0	15	57	1.38
39715853--39715887	18	1.9	18	94	0	61	25	31	8	34	1.86
39716310--39716396	44	2.0	45	90	2	140	37	0	12	49	1.41
39716422--39716485	29	2.2	30	85	2	85	53	28	0	18	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39716508--39716608	50	2.0	51	92	1	168	46	27	0	25	1.53
39716508--39717078	45	12.0	49	70	23	196	46	23	0	29	1.57
39716471--39717209	118	6.3	116	81	13	635	46	22	0	29	1.58
39716456--39717210	23	32.3	23	78	15	768	47	22	0	29	1.58
39717036--39717094	21	2.8	21	100	0	118	49	25	0	25	1.51
39717246--39717463	116	1.9	116	94	0	382	39	9	8	42	1.67
39717439--39717480	17	2.4	18	80	4	50	42	9	2	45	1.49
39719980--39720286	126	2.5	123	86	4	429	33	20	14	31	1.92
39726794--39726820	13	2.1	13	100	0	54	29	0	7	62	1.22
39727699--39727750	27	2.0	26	85	10	72	40	5	5	48	1.51
39731186--39731215	15	1.9	16	93	6	53	30	0	20	50	1.49
39736306--39736331	9	2.9	9	100	0	52	46	11	11	30	1.76
39748510--39748549	16	2.5	16	83	0	53	27	2	17	52	1.57
39761495--39761568	27	2.6	28	83	8	80	32	4	1	62	1.22
39761765--39762268	79	6.0	85	76	12	303	32	13	12	40	1.83
39761950--39762196	79	3.2	79	83	1	309	34	14	12	39	1.83
39762162--39762370	84	2.4	85	83	7	244	38	10	7	44	1.67
39766274--39766333	6	10.5	6	78	10	72	35	0	1	63	1.05
39766262--39766340	28	2.8	28	84	7	90	35	1	1	62	1.12
39777530--39778413	302	2.9	302	98	0	1687	34	15	20	29	1.93
39789866--39789895	2	15.0	2	100	0	60	0	0	50	50	1.00
39791724--39791770	20	2.4	19	82	10	58	63	2	4	29	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39792306--39792361	30	1.9	28	85	7	76	55	0	1	42	1.10
39797909--39797946	3	12.3	3	88	5	58	31	2	2	63	1.22
39805177--39805214	3	12.3	3	88	5	58	31	2	2	63	1.22
39808989--39809029	20	2.0	20	85	0	55	41	9	7	41	1.66
39815100--39815133	10	3.2	10	88	12	50	38	2	17	41	1.65
39817370--39817428	12	4.9	12	76	19	52	52	1	1	44	1.21
39817376--39817489	31	3.8	29	74	12	95	46	2	3	47	1.33
39817418--39817520	31	3.4	30	76	8	100	41	2	3	51	1.35
39817393--39817523	61	2.1	61	88	0	190	45	2	3	48	1.33
39818554--39818592	19	2.1	19	95	0	69	46	12	15	25	1.81
39820235--39820326	37	2.5	37	81	0	103	22	22	10	43	1.84
39827368--39827414	19	2.2	20	85	14	60	40	4	2	53	1.32
39828405--39828434	11	2.6	11	94	5	51	60	0	3	36	1.14
39828375--39828423	15	3.1	16	76	8	55	65	0	2	32	1.04
39828827--39829087	90	2.9	90	78	5	267	29	7	10	52	1.62
39832643--39832689	19	2.2	20	85	14	60	40	4	2	53	1.32
39833680--39833709	11	2.6	11	94	5	51	60	0	3	36	1.14
39833650--39833698	15	3.1	16	76	8	55	65	0	2	32	1.04
39834102--39834362	90	2.9	90	78	5	267	29	7	10	52	1.62
39841048--39841251	109	1.8	112	82	3	261	36	18	11	33	1.87
39847488--39847536	21	2.6	18	84	12	62	40	0	0	59	0.98
39847468--39847560	31	2.9	30	78	12	89	43	0	3	53	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39847516--39847575	23	2.7	23	82	10	63	33	0	6	60	1.23
39848027--39848080	25	2.3	23	87	6	72	33	5	1	59	1.31
39848027--39848091	23	2.7	24	85	7	78	33	6	1	58	1.32
39851607--39851679	29	2.6	28	89	8	112	31	12	17	38	1.87
39852159--39852183	13	1.9	13	100	0	50	56	8	16	20	1.65
39852088--39852190	51	2.0	51	88	0	152	49	5	10	33	1.61
39852388--39852422	18	2.0	17	88	5	52	45	0	0	54	0.99
39852425--39852622	66	3.2	64	68	19	184	42	2	6	48	1.41
39852508--39852542	18	2.0	17	88	5	52	45	0	0	54	0.99
39852379--39852684	120	2.5	120	97	0	567	43	1	4	50	1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144