genome.fa.s11.2.7.7.80.10.50.1000.24.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  24  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7255688--7255721	10	3.2	10	88	12	50	35	0	0	64	0.94
7255943--7255979	14	2.5	14	91	8	56	59	0	40	0	0.97
7256149--7256331	22	8.9	20	68	18	90	32	0	12	55	1.37
7256175--7256231	19	2.9	19	86	2	78	33	0	14	52	1.41
7256151--7256391	41	5.7	40	72	20	186	31	0	12	55	1.41
7256285--7256612	49	6.7	49	87	2	448	31	0	13	53	1.46
7256755--7256828	38	1.9	38	97	0	139	54	4	2	39	1.34
7256938--7256979	16	2.7	15	85	7	57	38	2	2	57	1.25
7262403--7262444	22	2.0	21	90	4	66	2	30	2	64	1.19
7262513--7262615	27	3.8	26	88	7	134	24	34	20	20	1.96
7266303--7266375	19	3.8	19	67	22	55	68	2	1	27	1.11
7266876--7266976	10	10.4	10	70	12	68	27	4	0	66	1.19
7266894--7266978	19	4.4	19	78	8	91	29	4	1	64	1.21
7266885--7266976	39	2.4	38	82	10	107	29	5	1	64	1.23
7275535--7275601	34	2.0	33	88	2	98	50	1	1	46	1.19
7282205--7282263	31	1.9	31	89	6	93	35	5	10	49	1.59
7282732--7282762	5	6.2	5	92	0	53	0	22	58	19	1.40
7288476--7288630	29	5.1	34	61	33	93	30	9	13	46	1.74
7288489--7288590	33	3.3	33	69	25	114	30	8	14	46	1.75
7288477--7288643	58	2.9	58	98	0	316	32	8	13	45	1.74
7288522--7288615	25	3.4	25	69	25	82	28	8	13	48	1.72
7288824--7288889	9	7.2	9	77	16	73	22	0	21	56	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7288824--7288855	11	3.1	11	91	8	50	18	0	18	62	1.33
7290182--7290206	13	1.9	13	100	0	50	40	16	8	36	1.77
7292777--7292801	13	1.9	13	100	0	50	40	16	8	36	1.77
7306503--7306544	18	2.3	18	87	0	57	59	4	0	35	1.19
7310901--7310942	22	1.9	22	85	0	57	11	19	26	42	1.85
7310926--7311030	43	2.4	43	82	4	122	24	33	17	24	1.96
7314021--7314062	22	1.9	22	85	0	57	11	19	26	42	1.85
7317456--7317606	41	3.8	41	92	2	236	30	26	23	19	1.98
7318877--7318915	14	2.8	14	84	0	51	35	12	23	28	1.91
7319992--7320022	9	3.3	9	91	8	53	48	0	0	51	1.00
7331887--7331914	8	3.5	8	100	0	56	67	10	0	21	1.20
7335068--7335269	46	4.5	46	96	1	356	33	15	22	28	1.94
7345974--7346025	19	2.7	19	81	0	59	63	5	0	30	1.18
7357114--7357181	34	2.0	35	82	8	86	51	2	2	42	1.32
7360715--7360767	24	2.2	24	86	0	70	54	9	3	32	1.50
7362993--7363028	14	2.5	15	86	13	58	55	0	0	44	0.99
7364682--7364745	26	2.5	25	75	5	65	37	32	9	20	1.85
7365638--7365679	15	2.9	14	82	10	50	33	0	2	64	1.07
7365765--7365805	22	1.9	22	90	5	66	21	2	0	75	0.92
7365803--7365903	27	3.7	26	74	21	82	35	4	2	56	1.36
7368853--7369010	41	3.9	41	80	6	142	34	27	18	20	1.96
7369126--7369306	64	2.9	63	86	6	235	40	18	7	33	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7371291--7371485	95	2.1	95	95	1	347	25	16	31	26	1.97
7379588--7379620	16	2.1	16	88	5	50	69	0	30	0	0.88
7381040--7381222	100	1.8	100	82	4	235	28	21	24	25	1.99
7382763--7382805	15	3.0	14	83	10	52	34	0	2	62	1.08
7382933--7382989	27	2.2	24	81	9	69	36	8	1	52	1.43
7392342--7392415	31	2.4	31	81	16	84	51	4	22	21	1.65
7392475--7392518	22	2.0	22	90	0	70	29	4	2	63	1.26
7401225--7401255	6	5.2	6	100	0	62	16	51	16	16	1.77
7413104--7413179	21	3.5	21	66	16	64	52	3	6	36	1.46
7413107--7413195	45	2.0	45	97	0	169	52	6	5	34	1.51
7418395--7418428	11	3.1	11	95	0	59	38	8	0	52	1.33
7423293--7423361	12	5.8	12	71	8	61	13	31	24	30	1.93
7423299--7423377	23	3.4	23	100	0	158	11	30	26	31	1.91
7423491--7423516	7	3.7	7	100	0	52	15	26	0	57	1.38
7424074--7424112	20	2.0	20	84	0	51	46	20	5	28	1.72
7426408--7426547	67	2.1	67	89	2	212	60	5	7	26	1.47
7426676--7426718	21	2.0	21	82	8	52	62	2	2	32	1.20
7427392--7427442	22	2.3	22	74	12	52	72	1	13	11	1.20
7428947--7429011	33	2.0	33	84	6	87	13	50	13	21	1.76
7437735--7438127	212	1.8	213	85	2	549	32	24	15	26	1.96
7437951--7438532	238	2.4	238	83	3	731	32	23	15	28	1.95
7438751--7438829	29	2.9	26	77	15	79	60	1	3	34	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7439392--7439448	25	2.3	25	77	14	64	31	3	3	61	1.30
7449858--7449887	15	2.0	15	93	0	51	50	0	10	40	1.36
7452138--7452415	25	11.2	25	66	13	83	36	19	23	20	1.95
7452319--7452382	26	2.5	26	84	2	76	39	23	20	17	1.92
7452521--7453862	667	2.0	669	82	4	1659	34	19	9	36	1.84
7454157--7454216	29	2.1	29	96	0	111	20	30	10	40	1.85
7460338--7460382	7	6.1	7	85	10	63	57	0	2	40	1.11
7463354--7463425	19	3.8	20	72	17	57	61	1	0	37	1.05
7463333--7463423	48	1.9	47	86	10	132	60	2	0	37	1.09
7463355--7463423	9	7.4	9	76	11	68	62	1	0	36	1.04
7463788--7463830	9	5.0	8	91	8	59	62	2	0	34	1.08
7463789--7463822	9	3.9	9	96	3	61	64	0	0	35	0.94
7484783--7484885	36	2.8	37	78	7	113	38	10	20	30	1.86
7485219--7485314	50	1.9	50	80	0	111	30	17	31	20	1.96
7485231--7485327	50	1.9	50	81	4	115	29	16	30	22	1.96
7486025--7486064	16	2.5	16	79	0	53	65	7	5	22	1.38
7496699--7496772	31	2.4	31	90	0	112	39	6	0	54	1.27
7496826--7496891	31	2.0	34	82	8	84	37	7	3	51	1.46
7501775--7501819	11	4.1	11	82	0	54	17	31	4	46	1.68
7501775--7501835	22	2.8	22	82	5	79	21	31	3	44	1.68
7503683--7503725	18	2.4	18	88	0	59	18	27	9	44	1.80
7503965--7504026	21	2.9	22	81	11	67	32	45	17	4	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7504145--7504265	49	2.5	49	94	0	215	44	2	9	42	1.51
7505409--7505817	124	3.3	123	92	1	649	30	19	17	32	1.95
7506721--7506769	20	2.5	20	81	15	59	69	0	0	30	0.89
7512801--7512835	18	2.0	17	88	5	52	45	0	0	54	0.99
7512890--7513059	38	4.3	39	65	13	105	45	2	4	47	1.36
7512921--7512955	18	2.0	17	88	5	52	45	0	0	54	0.99
7512796--7513092	120	2.5	120	99	0	585	44	2	4	48	1.36
7513041--7513075	18	2.0	17	88	5	52	45	0	0	54	0.99
7513311--7513362	16	3.2	16	94	0	95	38	34	0	26	1.57
7515173--7515207	15	2.2	16	90	5	54	25	0	20	54	1.45
7515761--7515827	31	2.2	31	81	10	75	43	5	0	50	1.26
7524706--7524743	14	2.5	16	87	8	53	39	7	5	47	1.55
7524813--7524853	18	2.2	18	86	4	55	51	2	0	46	1.14
7524825--7524866	18	2.3	19	80	12	52	33	4	0	61	1.17
7526383--7526433	25	2.0	25	100	0	102	37	23	11	27	1.90
7526495--7526574	22	3.5	22	79	5	88	40	17	25	17	1.91
7527562--7527588	14	1.9	14	100	0	54	0	29	18	51	1.46
7527650--7527706	25	2.4	24	91	5	89	0	26	21	52	1.47
7529857--7530023	72	2.3	72	85	3	230	25	5	13	55	1.60
7535194--7535232	5	7.6	5	82	5	51	41	0	17	41	1.50
7535577--7535623	24	2.0	24	82	0	58	17	21	19	42	1.89
7536083--7536109	6	4.5	6	100	0	54	51	0	18	29	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7558663--7558694	15	2.1	15	100	0	64	50	12	18	18	1.78
7564400--7564444	24	2.0	23	86	8	65	42	0	2	55	1.12
7566124--7566540	209	2.0	209	97	0	780	28	23	16	31	1.96
7566577--7566741	83	2.0	83	97	0	312	40	21	13	24	1.89
7576500--7576580	42	1.9	42	92	0	135	32	6	22	39	1.79
7577234--7577302	9	7.3	9	72	15	50	27	2	0	69	1.02
7577236--7577302	29	2.4	28	82	9	82	28	2	0	68	1.04
7579915--7580135	38	5.6	40	78	7	229	34	20	16	28	1.94
7579915--7580135	78	2.8	78	93	0	361	34	20	16	28	1.94
7580243--7580790	273	2.0	273	100	0	1096	38	18	6	36	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144