genome.fa.s11.2.7.7.80.10.50.1000.22.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  22  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6589219--6589296	39	2.0	39	100	0	156	43	17	17	20	1.88
6589613--6589649	18	2.1	17	90	5	56	24	10	24	40	1.87
6594124--6594178	28	1.9	29	85	3	76	47	7	10	34	1.66
6609088--6609126	19	2.1	19	85	0	51	58	0	2	38	1.12
6610278--6610344	20	3.4	20	75	2	55	41	1	10	46	1.47
6623270--6623303	18	2.0	17	88	11	52	26	0	17	55	1.42
6623995--6624042	21	2.3	21	82	3	53	33	2	4	60	1.27
6640496--6640553	3	19.7	3	85	3	73	32	6	0	60	1.23
6647392--6647562	86	2.0	85	95	1	306	30	16	18	34	1.93
6648797--6648824	3	9.3	3	100	0	56	67	0	0	32	0.91
6648919--6648955	13	2.9	13	92	4	58	29	2	0	67	1.04
6648896--6648961	33	2.0	33	88	5	98	33	3	1	62	1.20
6661345--6661379	17	2.0	18	88	5	54	65	5	11	17	1.43
6681870--6681915	24	1.9	24	86	0	65	45	0	2	52	1.13
6686561--6686600	14	2.9	14	84	0	53	42	17	7	32	1.77
6686526--6686592	34	1.9	35	87	3	100	44	13	10	31	1.77
6686651--6686703	2	26.5	2	100	0	106	50	0	49	0	1.00
6687365--6687391	8	3.4	8	100	0	54	55	0	0	44	0.99
6689557--6689605	20	2.5	19	80	6	62	14	14	6	65	1.45
6691900--6691951	24	2.2	24	89	0	77	55	9	1	32	1.43
6704833--6704865	16	2.1	16	88	11	50	87	3	9	0	0.63
6709891--6709932	12	3.7	11	84	12	50	54	0	9	35	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6709901--6709943	11	3.8	12	85	11	56	58	0	4	37	1.19
6715681--6715773	39	2.5	37	80	7	98	27	29	22	20	1.98
6716127--6716167	3	13.7	3	89	0	64	60	2	0	36	1.10
6717232--6717281	9	5.6	9	79	15	59	54	2	0	44	1.11
6722972--6723070	41	2.4	41	89	0	153	31	20	20	28	1.97
6722998--6723085	41	2.1	41	85	0	113	34	21	18	26	1.96
6732163--6732204	22	2.0	20	90	9	66	76	0	7	16	1.00
6744053--6744077	12	2.1	12	100	0	50	52	8	32	8	1.60
6744072--6744111	2	20.0	2	100	0	80	50	0	50	0	1.00
6744656--6744708	17	2.9	18	78	15	56	1	39	1	56	1.21
6747373--6747422	18	2.5	20	84	9	59	48	2	6	44	1.39
6757682--6757726	19	2.3	19	80	3	54	66	2	0	31	1.04
6757693--6757740	19	2.5	20	87	9	66	56	0	0	43	0.99
6757985--6758028	21	2.0	21	82	4	52	63	2	4	29	1.26
6762948--6762993	23	2.0	24	86	4	67	36	0	0	63	0.95
6777246--6777448	46	4.3	48	88	7	265	35	14	21	28	1.92
6777180--6777448	98	2.7	98	93	0	457	34	14	22	28	1.93
6777412--6777557	37	4.0	37	93	1	242	36	16	21	24	1.94
6778343--6778367	9	2.8	9	100	0	50	48	16	0	36	1.46
6778449--6778501	22	2.5	22	81	3	63	37	5	1	54	1.35
6787590--6787659	32	2.2	31	78	16	72	34	4	1	60	1.25
6787652--6787734	41	2.0	41	100	0	166	34	12	2	50	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6789262--6789302	20	2.0	20	95	0	73	17	12	14	56	1.68
6789622--6789663	18	2.4	17	88	4	57	30	7	2	59	1.37
6802346--6802385	7	5.7	7	100	0	80	27	15	0	57	1.38
6808088--6808163	27	2.8	27	80	4	91	19	25	32	22	1.97
6813251--6813292	16	2.7	15	85	7	57	57	2	2	38	1.25
6813329--6813410	38	2.2	38	97	0	155	39	2	3	54	1.31
6813444--6813565	60	2.0	60	87	3	174	54	13	0	31	1.46
6813580--6813719	8	16.4	8	65	17	50	50	15	1	32	1.52
6813606--6813797	27	7.7	26	80	15	212	53	13	1	31	1.47
6813558--6813776	75	2.9	75	89	6	320	52	15	1	31	1.51
6813558--6813797	49	4.9	49	80	11	210	52	14	1	31	1.49
6813559--6813927	124	3.0	122	80	11	348	52	14	1	31	1.49
6813834--6813920	20	4.2	21	84	11	117	56	12	2	28	1.49
6813745--6813919	61	2.8	59	77	16	169	54	13	1	30	1.46
6813762--6813949	61	3.1	61	71	13	163	54	13	1	31	1.46
6813985--6814010	12	2.2	12	100	0	52	46	15	0	38	1.46
6814234--6814298	27	2.4	27	97	0	121	13	35	21	29	1.92
6815791--6815829	19	2.1	19	95	0	69	20	15	10	53	1.70
6815907--6815937	16	2.0	16	93	6	55	70	0	12	16	1.16
6828627--6828673	24	2.0	24	86	0	67	29	42	2	25	1.67
6835415--6835458	23	1.9	24	86	9	65	56	20	9	13	1.64
6841213--6841248	16	2.2	16	100	0	72	25	0	36	38	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6841229--6841319	45	2.0	45	85	2	121	30	5	28	35	1.80
6841485--6841519	18	2.0	17	88	5	52	54	0	0	45	0.99
6841372--6841687	156	2.0	157	94	0	553	43	2	5	48	1.40
6841621--6841662	15	2.7	16	82	14	52	52	2	0	45	1.13
6841630--6841671	15	2.9	15	82	10	52	52	0	0	47	1.00
6841422--6841737	156	2.0	154	81	5	364	44	4	4	46	1.41
6841750--6841784	18	2.0	17	88	5	52	54	0	0	45	0.99
6841627--6841838	109	1.9	109	95	0	379	47	4	2	45	1.36
6841658--6841829	37	4.7	35	65	22	95	46	5	2	45	1.38
6841736--6841958	120	1.9	120	97	0	419	47	4	2	44	1.38
6841870--6841904	18	2.0	17	88	5	52	54	0	0	45	0.99
6844734--6844768	9	4.0	9	92	7	63	65	0	0	34	0.93
6844734--6844768	17	2.0	17	94	5	61	65	0	0	34	0.93
6848824--6848904	28	3.0	27	79	13	78	59	7	2	30	1.38
6848880--6848940	18	3.5	17	73	13	52	70	0	1	27	0.97
6850078--6850137	31	1.9	32	86	3	86	50	5	1	43	1.34
6869742--6869772	4	7.8	4	100	0	62	22	0	0	77	0.77
6877321--6877359	17	2.3	18	86	8	55	35	10	2	51	1.50
6877326--6877360	17	2.0	18	94	5	63	34	5	2	57	1.37
6890578--6890698	39	3.1	39	97	0	233	51	18	7	23	1.71
6892605--6892633	15	1.9	15	100	0	58	62	0	0	37	0.96
6894909--6894975	11	6.0	11	80	16	68	43	0	29	26	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6898813--6898881	24	2.9	24	97	0	129	39	18	20	21	1.93
6898934--6898964	14	2.2	14	94	0	53	48	12	0	38	1.42
6904842--6904897	17	2.8	21	70	30	50	62	0	8	28	1.25
6905778--6905880	37	2.7	38	80	6	109	28	18	22	31	1.97
6907643--6907698	30	1.9	29	89	7	87	35	5	1	57	1.32
6907669--6907722	19	2.8	19	74	2	54	37	5	0	57	1.22
6908019--6908053	2	17.5	2	100	0	70	51	0	0	48	1.00
6908959--6908994	14	2.4	16	81	18	58	30	11	5	52	1.59
6909609--6909855	90	2.7	89	79	6	257	32	21	15	29	1.94
6916429--6916620	58	3.3	58	98	0	366	18	34	9	36	1.84
6932815--6932869	21	2.6	21	91	0	92	21	9	40	29	1.84
6932949--6933013	32	2.0	32	100	0	130	43	3	12	41	1.58
6932955--6933007	16	3.3	16	75	19	65	47	1	13	37	1.54
6933163--6933214	22	2.3	22	77	9	52	50	5	1	42	1.37
6933813--6934116	30	10.2	30	96	0	551	37	9	0	52	1.38
6934186--6934264	7	11.1	7	72	17	58	12	48	1	37	1.50
6934186--6934264	13	5.6	13	80	14	77	12	48	1	37	1.50
6934129--6934264	60	2.3	57	85	8	166	11	48	2	36	1.55
6934162--6934254	45	2.1	43	92	4	150	9	52	3	34	1.50
6936164--6936234	29	2.3	31	83	13	85	50	11	2	35	1.53
6937626--6937653	14	2.0	14	100	0	56	7	7	7	78	1.09
6940245--6940296	25	2.1	25	92	0	86	48	5	5	40	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6940813--6940879	27	2.7	26	76	15	70	49	13	4	32	1.62
6940872--6940916	21	2.1	21	88	12	65	46	6	2	44	1.42
6945754--6945780	6	4.5	6	100	0	54	0	29	0	70	0.88
6953734--6953776	11	3.7	11	81	9	50	27	0	11	60	1.31
6961924--6962004	24	3.4	24	73	13	85	34	20	28	16	1.94
6975029--6975066	18	2.1	19	90	9	62	63	0	0	36	0.95
6975034--6975069	9	4.1	9	85	7	56	63	0	0	36	0.94
6976152--6976212	13	4.5	13	70	13	52	72	1	19	6	1.16
6976149--6976213	27	2.3	29	76	5	71	70	1	20	7	1.19
6978058--6978107	26	1.9	26	95	0	91	42	2	14	42	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144