genome.fa.s11.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  14  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3516628--3516696	35	2.0	35	94	0	120	18	52	10	18	1.73
3516635--3516724	35	2.6	35	85	5	94	22	52	8	16	1.71
3517214--3517247	11	3.1	11	88	12	52	0	52	0	47	1.00
3517204--3517247	22	2.0	22	86	8	63	0	56	0	43	0.99
3517212--3517249	11	3.4	11	83	16	51	0	52	0	47	1.00
3531022--3531107	31	2.9	28	75	14	82	34	2	11	51	1.51
3531515--3531596	31	2.6	31	82	0	101	41	9	8	40	1.69
3531586--3531643	29	2.0	30	83	10	75	41	13	12	32	1.82
3532086--3532142	28	2.0	28	86	0	78	38	3	19	38	1.69
3542496--3542551	30	1.9	29	85	7	78	25	8	16	50	1.74
3549267--3549412	77	1.9	77	94	0	256	30	27	12	29	1.93
3556015--3556134	50	2.4	50	78	2	143	26	25	28	20	1.99
3557821--3557874	16	3.4	15	80	19	56	42	1	31	24	1.65
3557858--3557946	44	2.0	46	86	4	128	30	3	28	38	1.73
3558169--3558209	21	2.0	21	100	0	82	56	9	0	34	1.32
3571645--3571694	25	2.0	25	85	14	68	8	22	0	70	1.13
3573052--3573119	24	2.9	24	71	4	68	52	2	0	44	1.16
3572999--3573118	59	2.0	59	82	8	143	53	3	0	42	1.23
3576984--3577020	18	2.1	17	90	5	56	62	0	0	37	0.96
3585917--3585967	15	3.5	15	72	5	50	50	13	11	23	1.74
3586213--3586373	58	2.7	58	74	5	162	24	15	17	42	1.88
3588161--3588191	3	10.3	3	100	0	62	64	0	0	35	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3603155--3603195	21	2.0	21	90	0	64	19	29	21	29	1.98
3607593--3607627	3	11.7	3	100	0	70	65	0	34	0	0.93
3609093--3609126	16	2.1	16	88	0	50	47	0	26	26	1.53
3627045--3627122	40	2.0	40	92	0	129	50	12	7	29	1.68
3627049--3627117	20	3.3	22	64	15	56	46	14	5	33	1.68
3629374--3629407	5	6.6	5	93	6	59	0	17	61	20	1.34
3630876--3630915	19	2.0	20	86	13	57	62	5	0	32	1.17
3631547--3631606	17	3.6	16	77	6	57	76	1	1	20	0.96
3631869--3631924	9	6.4	9	80	15	64	66	0	0	33	0.92
3631870--3631925	17	3.3	16	85	11	76	64	0	0	35	0.94
3631870--3631930	26	2.4	25	86	13	81	63	0	0	36	0.94
3631931--3631971	19	2.2	19	86	0	55	31	2	4	60	1.30
3638014--3638094	3	26.0	3	75	16	67	61	2	3	32	1.26
3638857--3638883	14	1.9	14	100	0	54	74	0	3	22	0.98
3640720--3640819	44	2.3	44	85	0	128	23	26	18	33	1.97
3640760--3641594	44	18.8	44	70	10	411	26	23	20	30	1.98
3641202--3641508	134	2.3	134	92	1	499	26	24	20	28	1.99
3640785--3641594	358	2.3	350	84	6	1010	26	22	20	29	1.99
3642879--3642903	13	1.9	13	100	0	50	16	16	0	68	1.22
3643849--3643969	39	3.1	38	76	15	122	12	9	7	70	1.34
3644624--3644679	25	2.1	28	77	12	64	55	7	16	21	1.64
3647043--3647098	25	2.1	28	77	12	64	55	7	16	21	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3650203--3650280	3	25.0	3	76	17	70	62	2	2	32	1.22
3650203--3650280	28	2.8	28	79	11	52	62	2	2	32	1.22
3651043--3651069	14	1.9	14	100	0	54	74	0	3	22	0.98
3652636--3652695	24	2.5	25	76	12	65	56	3	21	18	1.55
3666067--3666111	12	3.6	13	90	3	67	66	2	0	31	1.04
3674614--3674705	25	3.6	25	76	4	87	20	26	20	32	1.97
3682138--3682250	56	2.0	56	92	0	190	29	27	15	27	1.96
3683121--3683173	25	2.1	26	82	3	63	50	5	13	30	1.64
3683646--3683673	6	4.7	6	100	0	56	50	17	0	32	1.47
3686007--3686143	42	3.3	42	84	0	166	16	22	18	42	1.89
3685996--3686143	21	7.0	21	68	4	84	15	22	18	43	1.88
3690888--3690921	17	1.9	18	94	5	61	70	0	0	29	0.87
3690886--3690922	19	2.0	19	89	5	58	70	0	0	29	0.88
3693820--3693867	23	2.1	23	96	0	87	33	8	18	39	1.81
3703412--3703471	3	20.0	3	100	0	120	66	0	33	0	0.92
3703541--3703634	49	1.9	49	93	0	161	26	15	13	43	1.85
3704544--3704584	21	2.0	21	90	0	64	31	26	17	24	1.97
3707715--3707747	6	5.5	6	100	0	66	33	0	15	51	1.43
3717369--3717406	17	2.2	17	86	9	51	68	5	2	23	1.23
3717661--3717743	30	2.7	31	81	10	98	40	9	4	44	1.58
3719966--3720009	7	6.3	7	91	0	52	22	29	9	38	1.85
3719966--3720009	14	3.1	14	86	0	61	22	29	9	38	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3719935--3720113	65	2.8	65	94	0	324	27	25	13	32	1.94
3720038--3720069	7	4.6	7	96	0	55	18	31	9	40	1.83
3720038--3720074	14	2.6	14	86	0	56	21	29	10	37	1.88
3728069--3728095	12	2.2	12	100	0	54	33	7	0	59	1.25
3734849--3734888	16	2.5	17	84	12	57	72	0	0	27	0.85
3735464--3735513	23	2.2	23	82	7	57	66	2	2	30	1.14
3737182--3737240	23	2.5	23	81	13	59	49	1	0	49	1.11
3750608--3750634	2	13.5	2	100	0	54	51	0	0	48	1.00
3759538--3759580	16	2.6	16	82	14	52	51	2	2	44	1.27
3764815--3765036	111	2.0	111	100	0	444	33	11	15	39	1.83
3765341--3765446	51	2.1	51	98	0	203	37	4	9	48	1.57
3765625--3765664	20	2.0	20	90	0	62	50	12	10	27	1.72
3765613--3765679	34	1.9	35	87	3	100	46	11	8	32	1.72
3779054--3779097	21	2.2	20	87	4	61	68	6	18	6	1.35
3779960--3779998	20	2.0	20	89	0	60	64	0	0	35	0.94
3789791--3789863	28	2.6	27	80	6	74	57	12	10	19	1.64
3792350--3792376	5	5.4	5	100	0	54	40	18	18	22	1.91
3795084--3795118	16	2.2	16	89	0	52	37	0	5	57	1.23
3798671--3798868	102	2.0	101	87	3	290	47	7	2	41	1.45
3799762--3799786	4	6.2	4	100	0	50	28	24	24	24	2.00
3816992--3817056	31	2.1	31	97	0	121	38	20	13	27	1.90
3820810--3820911	52	2.0	52	88	3	152	33	7	6	51	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3821112--3821144	3	11.0	3	100	0	66	0	33	0	66	0.92
3824746--3824798	28	1.9	27	92	3	88	20	20	11	47	1.81
3848593--3848630	14	2.7	14	83	0	58	47	5	5	42	1.48
3857576--3857632	25	2.4	24	78	16	64	42	1	1	54	1.21
3857573--3857623	25	2.0	25	84	7	66	45	1	0	52	1.12
3875698--3875738	22	1.9	22	90	5	66	73	12	2	12	1.20
3877396--3877466	31	2.3	30	88	9	99	39	7	15	38	1.75
3877724--3877763	21	1.9	21	94	0	71	27	20	30	22	1.98
3878221--3878279	12	5.0	11	84	10	55	22	6	11	59	1.56
3878237--3878270	6	5.7	6	92	0	59	17	2	14	64	1.40
3878213--3878279	18	3.7	18	76	7	73	23	7	10	58	1.57
3878315--3878367	12	4.4	12	80	0	52	24	11	13	50	1.73
3880711--3880850	65	2.2	65	90	0	217	22	20	22	34	1.97
3883870--3883966	40	2.4	40	100	0	194	21	8	22	47	1.77
3883943--3884009	28	2.5	26	77	11	73	29	7	11	50	1.66
3885150--3885195	24	2.0	24	86	4	67	45	6	21	26	1.76
3885391--3885453	20	3.3	20	69	24	64	52	25	4	17	1.64
3885375--3885477	36	2.9	36	85	2	145	50	25	5	18	1.69
3885777--3885822	3	15.3	3	86	0	65	2	30	0	67	1.03
3892959--3892988	2	15.0	2	92	0	51	0	46	0	53	1.00
3900621--3900688	34	2.0	34	100	0	136	50	5	26	17	1.69
3904659--3905507	348	2.4	348	94	0	1511	32	19	17	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3905449--3905538	33	2.7	33	93	3	146	26	14	14	44	1.83
3906288--3906337	21	2.4	21	86	0	73	28	24	14	34	1.93
3906321--3906469	66	2.3	66	93	0	253	21	20	14	42	1.88
3906459--3906511	21	2.5	21	75	0	61	32	20	18	28	1.97
3906283--3906844	174	3.1	174	81	8	547	23	22	14	39	1.91
3906518--3906898	66	5.8	66	90	1	593	23	23	12	40	1.89
3913487--3913524	18	2.1	18	100	0	76	47	21	0	31	1.51
3913700--3913919	109	2.1	105	87	6	309	45	22	10	21	1.83
3919580--3919771	88	2.2	87	83	4	224	30	5	22	41	1.77
3922267--3922436	59	2.9	59	96	0	313	45	9	4	40	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144