genome.fa.s11.2.7.7.80.10.50.1000.46.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  46  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14314756--14314890	61	2.2	61	85	0	180	31	16	25	26	1.96
14317366--14317686	76	4.2	76	79	1	304	23	19	24	31	1.98
14317366--14317677	152	2.1	152	83	1	392	23	19	24	32	1.98
14318355--14318382	13	2.2	13	100	0	56	32	0	21	46	1.52
14321076--14321270	91	2.2	88	86	4	266	31	24	13	30	1.94
14323794--14323831	16	2.5	16	87	8	53	44	18	5	31	1.72
14328218--14328266	24	2.0	24	96	0	89	30	18	12	38	1.87
14341528--14341552	12	2.1	12	100	0	50	16	8	8	68	1.38
14344131--14344164	16	2.1	16	89	10	52	55	0	0	44	0.99
14348938--14348977	20	2.0	20	85	9	55	55	25	17	2	1.55
14356124--14356161	3	12.7	3	88	0	58	34	0	5	60	1.19
14362219--14362269	26	2.0	26	84	7	68	50	7	5	35	1.55
14363870--14363913	21	2.1	21	87	8	63	61	0	0	38	0.96
14363873--14363920	22	2.2	22	88	7	71	60	0	0	39	0.97
14364051--14364079	6	4.8	6	100	0	58	0	48	0	51	1.00
14367769--14367809	20	2.0	20	100	0	82	39	14	9	36	1.79
14367994--14368040	21	2.3	21	96	3	87	36	17	12	34	1.87
14395957--14395990	2	17.0	2	100	0	68	0	50	0	50	1.00
14401841--14401884	22	2.0	23	86	4	63	56	0	0	43	0.99
14404356--14404386	13	2.5	13	94	5	55	16	0	0	83	0.64
14404356--14404386	6	5.0	6	92	7	53	16	0	0	83	0.64
14405267--14405331	30	2.2	30	82	0	76	40	6	3	50	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14413226--14413456	128	1.8	127	84	1	293	32	21	21	24	1.98
14413571--14413899	173	1.9	173	80	3	385	27	19	25	27	1.99
14413424--14414394	217	4.5	217	92	0	1674	29	18	24	27	1.98
14413424--14414394	435	2.2	434	93	0	1683	29	18	24	27	1.98
14413528--14414384	44	19.7	44	72	7	428	29	18	24	27	1.98
14422322--14422445	62	2.0	62	98	0	239	42	16	19	21	1.89
14426219--14426252	16	2.2	16	89	5	52	70	8	5	14	1.31
14426290--14426317	12	2.3	12	100	0	56	14	42	7	35	1.73
14427303--14427417	4	29.0	4	79	1	115	26	6	23	43	1.79
14430099--14430154	18	3.1	18	84	7	78	14	5	1	78	1.00
14430104--14430154	6	8.5	6	74	8	50	15	3	1	78	0.99
14435077--14435350	27	10.3	27	80	5	243	41	23	15	20	1.90
14435077--14435266	78	2.4	79	86	2	265	42	24	13	18	1.87
14435084--14435350	81	3.3	79	80	9	274	40	23	15	19	1.90
14435795--14435860	33	2.0	33	84	0	87	22	22	25	28	1.99
14438033--14438145	42	2.6	42	77	10	113	33	25	15	24	1.95
14447073--14447125	25	2.1	26	89	3	81	50	13	16	18	1.77
14449073--14449338	103	2.6	104	90	3	419	19	20	29	29	1.97
14456565--14456830	103	2.6	104	90	3	419	19	20	29	29	1.97
14466071--14466131	28	2.2	27	94	2	104	49	3	11	36	1.55
14468505--14469181	87	7.8	87	94	1	1137	24	23	24	28	2.00
14468639--14468775	43	3.2	43	63	17	111	22	19	27	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14468505--14469181	173	3.9	174	92	1	1137	24	23	24	28	2.00
14470807--14470854	13	3.7	13	83	10	62	4	16	0	79	0.89
14470807--14470854	6	7.5	6	84	13	60	4	16	0	79	0.89
14479932--14479981	20	2.5	19	74	6	55	78	2	10	10	1.06
14481378--14481528	29	5.2	29	66	17	107	39	23	5	31	1.79
14481368--14481541	58	3.0	58	98	0	330	37	24	6	32	1.80
14484291--14485243	46	20.6	46	97	1	1789	28	20	15	36	1.92
14489746--14489784	16	2.4	16	86	4	51	33	10	12	43	1.77
14490906--14490950	22	2.0	23	87	8	67	48	8	4	37	1.55
14504019--14504108	25	3.6	25	80	5	101	31	23	23	22	1.99
14505856--14505956	27	3.4	28	66	21	64	31	2	2	62	1.25
14520742--14520779	20	1.9	20	89	10	60	31	0	0	68	0.90
14523639--14523705	29	2.2	28	80	17	73	52	8	11	26	1.68
14525990--14526027	14	2.7	15	84	12	53	0	34	0	65	0.93
14525999--14526025	14	1.9	14	100	0	54	0	29	0	70	0.88
14526605--14526653	19	2.6	19	75	12	55	10	12	8	69	1.37
14528742--14528772	15	2.1	15	100	0	62	38	0	6	54	1.26
14528813--14528847	17	2.1	17	100	0	70	34	0	0	65	0.93
14528753--14529113	122	3.1	114	84	9	493	42	1	3	51	1.28
14528931--14528999	15	4.7	15	73	26	60	42	2	0	55	1.15
14528948--14529002	28	1.9	29	89	10	87	41	0	0	58	0.98
14528957--14529008	13	3.7	14	78	21	56	40	0	0	59	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14528950--14529007	15	4.0	15	80	13	59	41	0	0	58	0.98
14528975--14529060	38	2.3	39	78	10	97	44	1	3	51	1.26
14543700--14543736	19	1.9	19	88	0	56	51	0	2	45	1.15
14544279--14544327	22	2.2	22	80	16	57	59	2	4	34	1.28
14548177--14548207	16	1.9	16	93	0	53	51	3	0	45	1.17
14552199--14552245	23	2.0	23	100	0	94	42	12	0	44	1.42
14569646--14569680	6	6.0	6	93	3	54	51	2	45	0	1.16
14570194--14570230	3	12.3	3	88	0	56	35	2	0	62	1.10
14570385--14570449	19	3.5	20	76	19	77	36	0	0	63	0.95
14571058--14571095	18	2.1	18	90	9	60	34	15	18	31	1.92
14579673--14579709	19	1.9	19	100	0	74	32	0	18	48	1.49
14579651--14579814	41	4.0	40	74	17	156	32	0	13	54	1.39
14579763--14579975	49	4.3	49	85	7	304	31	0	13	53	1.45
14579912--14579969	22	2.9	19	71	14	53	34	1	12	51	1.49
14579763--14579975	97	2.2	99	92	3	358	31	0	13	53	1.45
14580451--14580521	36	2.0	35	91	2	115	39	32	12	15	1.85
14580667--14580741	34	2.1	36	87	7	109	57	9	18	14	1.64
14584795--14584826	13	2.4	14	94	5	57	0	3	28	68	1.04
14587300--14587352	21	2.5	21	81	0	61	28	33	9	28	1.88
14604815--14604854	19	2.2	18	90	4	62	15	27	5	52	1.63
14605710--14605813	52	2.0	51	96	1	190	34	25	18	21	1.95
14608775--14608853	27	2.7	28	76	13	70	32	10	10	46	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14609882--14609963	42	1.9	43	90	2	130	31	12	15	40	1.85
14613236--14613268	17	1.9	17	100	0	66	42	9	0	48	1.35
14625462--14625488	5	5.4	5	100	0	54	40	40	0	18	1.51
14628016--14628075	31	1.9	31	93	0	102	40	8	5	46	1.56
14631656--14631719	3	22.0	3	76	12	53	60	0	37	1	1.06
14636142--14636222	20	4.2	19	75	12	76	64	3	1	30	1.19
14636147--14636223	10	7.8	10	68	18	54	66	2	1	29	1.13
14636234--14636283	25	2.0	25	81	14	59	52	6	0	42	1.26
14639689--14639728	21	1.9	21	89	0	62	47	7	15	30	1.72
14645083--14645202	59	2.0	59	98	0	231	35	10	9	44	1.71
14646340--14646403	29	2.2	29	78	10	69	43	3	4	48	1.39
14654554--14654584	15	2.1	15	93	0	53	35	29	6	29	1.82
14656073--14656135	30	2.0	32	85	11	87	46	0	3	50	1.17
14656067--14656146	30	2.7	29	74	16	74	46	1	2	50	1.23
14660080--14660120	21	2.0	21	90	0	64	19	29	21	29	1.98
14669074--14669105	3	10.7	3	100	0	64	31	0	0	68	0.90
14671898--14671923	3	8.7	3	100	0	52	30	0	0	69	0.89
14685063--14685114	23	2.2	24	82	3	61	1	25	5	67	1.23
14685566--14685590	11	2.3	11	100	0	50	44	0	28	28	1.55
14692931--14692977	4	11.8	4	95	0	76	46	23	4	25	1.70
14717043--14717072	15	2.0	15	93	0	51	76	0	23	0	0.78
14717361--14717388	3	9.3	3	100	0	56	67	0	32	0	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14717373--14717473	50	2.0	49	90	1	157	56	7	25	9	1.59
14718718--14718761	22	2.0	22	86	13	63	31	0	0	68	0.90
14734616--14734697	42	2.0	42	85	4	112	30	24	14	30	1.95
14736505--14736628	24	5.2	24	100	0	248	40	17	8	33	1.79
14736838--14736878	14	2.7	15	81	11	57	65	2	0	31	1.05
14737104--14737177	28	2.5	30	82	10	91	43	0	4	52	1.20
14737509--14737565	22	2.6	23	83	8	73	15	8	12	63	1.52
14744004--14744157	84	1.8	83	91	1	254	37	22	2	37	1.68
14747390--14748262	285	3.0	284	88	4	1229	26	11	19	42	1.85
14766007--14766049	22	2.0	22	100	0	86	32	4	4	58	1.39

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144