genome.fa.s11.2.7.7.80.10.50.1000.57.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  57  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17576000--17576055	19	3.0	19	74	12	62	39	0	3	57	1.16
17575996--17576078	37	2.3	35	83	6	103	39	0	2	57	1.12
17576000--17576129	28	4.6	28	72	16	67	40	0	1	56	1.14
17576030--17576094	27	2.4	27	87	7	87	44	0	1	53	1.09
17576061--17576120	21	3.0	21	76	18	74	41	1	0	56	1.09
17576139--17576305	87	2.0	85	83	5	212	35	8	17	37	1.81
17578266--17578324	28	2.1	28	80	0	64	66	5	3	25	1.28
17578384--17578425	18	2.4	17	80	7	57	57	0	2	40	1.12
17580704--17580740	19	2.0	19	89	5	58	40	0	0	59	0.97
17583091--17583159	27	2.4	29	80	20	83	56	2	1	39	1.23
17583705--17583745	21	2.0	21	85	9	57	56	2	0	41	1.13
17589133--17589176	20	2.3	19	84	7	61	54	0	2	43	1.12
17592547--17592672	47	2.6	48	79	6	130	33	8	24	33	1.86
17593261--17593294	16	2.2	15	89	5	50	14	0	2	82	0.79
17598564--17598605	14	3.5	12	82	17	52	61	0	0	38	0.96
17598572--17598601	14	2.1	14	100	0	60	56	0	0	43	0.99
17598596--17598638	15	2.9	14	80	10	50	34	0	0	65	0.93
17602873--17602940	35	1.9	35	85	11	95	13	33	26	26	1.93
17607965--17608035	30	2.3	32	78	9	85	39	19	0	40	1.52
17612124--17612168	19	2.2	21	88	7	67	11	11	2	75	1.13
17612140--17612178	19	2.1	19	85	0	51	15	12	0	71	1.14
17621314--17621346	13	2.3	15	90	10	52	39	0	3	57	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17624128--17624518	98	4.0	98	98	0	746	27	9	25	37	1.87
17635998--17636598	45	13.7	44	72	12	314	30	21	21	25	1.98
17635914--17636594	218	3.1	218	93	0	1146	30	21	21	25	1.98
17638556--17638750	98	2.0	98	94	2	347	27	10	24	36	1.89
17651821--17651866	24	1.9	24	86	8	67	4	17	2	76	1.06
17656738--17656777	15	2.8	14	81	7	53	45	5	7	42	1.54
17658160--17658329	88	1.9	88	80	2	198	20	26	22	31	1.98
17669340--17669387	3	16.0	3	100	0	96	0	33	0	66	0.92
17669411--17669436	4	6.5	4	100	0	52	23	0	0	76	0.78
17671683--17671716	10	3.4	10	87	0	50	23	2	11	61	1.43
17674751--17674775	2	12.5	2	100	0	50	48	0	0	52	1.00
17677583--17677621	19	2.1	19	85	9	53	41	10	0	48	1.37
17679754--17679816	26	2.4	26	80	12	67	39	0	0	60	0.97
17685325--17685369	20	2.2	20	84	7	56	40	0	4	55	1.20
17687512--17687559	3	16.0	3	86	0	69	31	4	2	62	1.26
17687568--17687617	19	2.6	19	83	0	55	32	6	4	58	1.41
17687933--17687968	18	2.1	17	89	5	54	13	5	8	72	1.27
17688076--17688293	111	2.0	110	93	0	373	30	16	20	33	1.94
17690287--17690329	18	2.2	20	92	8	72	37	0	18	44	1.50
17691945--17692269	44	7.6	43	67	12	116	24	21	21	31	1.98
17692300--17692346	22	2.1	22	92	0	76	31	12	31	23	1.92
17692172--17692474	150	2.0	150	94	0	534	23	18	25	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17692322--17692885	40	13.4	40	68	13	290	24	20	23	30	1.98
17692477--17692847	87	4.3	87	69	12	275	24	20	22	32	1.98
17692322--17692892	127	4.5	127	96	0	1016	24	20	23	31	1.98
17692912--17693375	100	4.7	100	86	1	581	26	22	21	30	1.99
17692961--17693375	198	2.1	200	87	0	600	26	23	20	29	1.99
17692973--17693352	50	7.6	50	67	3	237	26	21	20	31	1.98
17693655--17693712	24	2.4	24	85	0	80	31	24	10	34	1.89
17697732--17697781	19	2.6	20	84	6	68	42	10	18	30	1.82
17700077--17700119	18	2.2	20	92	8	72	37	0	18	44	1.50
17706841--17706875	18	1.9	18	88	11	54	51	0	5	42	1.25
17707535--17707576	21	2.0	21	90	0	66	42	4	0	52	1.22
17712852--17712919	27	2.5	26	83	6	82	50	1	5	42	1.35
17719369--17719432	24	2.6	24	79	18	69	68	6	6	18	1.32
17727185--17727276	40	2.3	39	83	7	105	21	27	30	20	1.98
17727350--17727380	9	3.4	9	90	0	53	12	0	25	61	1.32
17727494--17728062	126	4.5	126	84	2	716	31	15	22	31	1.95
17731243--17731698	22	21.2	21	83	6	511	26	0	27	45	1.58
17731243--17731697	43	10.6	43	83	4	515	25	0	27	45	1.58
17731244--17731697	65	7.0	64	83	5	515	25	0	27	45	1.58
17733156--17733193	20	1.9	20	84	10	51	57	7	0	34	1.28
17734087--17734125	13	3.1	13	92	3	62	51	0	0	48	1.00
17734128--17734227	51	2.0	51	86	4	139	45	3	28	24	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17734187--17734251	11	5.8	12	72	18	59	43	1	32	23	1.63
17736597--17736623	14	1.9	14	100	0	54	59	0	3	37	1.15
17737320--17737395	40	1.9	40	86	0	107	34	6	2	56	1.39
17745298--17745429	35	3.7	35	88	3	176	37	29	13	19	1.90
17748578--17748636	24	2.3	24	82	8	64	33	3	11	50	1.56
17760161--17760205	24	1.9	23	86	4	63	35	0	0	64	0.94
17764473--17764507	17	2.1	17	94	0	61	62	0	0	37	0.95
17764476--17764515	17	2.4	17	86	0	53	65	0	0	35	0.93
17764507--17764531	6	4.2	6	100	0	50	52	0	0	48	1.00
17764913--17764955	23	2.0	23	86	13	65	53	0	0	46	1.00
17764939--17764982	20	2.2	20	84	11	56	68	0	4	27	1.09
17774536--17774588	4	13.2	4	100	0	106	24	0	24	50	1.49
17774871--17774946	21	3.8	21	79	20	99	68	5	0	26	1.11
17774864--17774917	16	3.1	16	76	23	63	72	1	0	25	0.95
17774864--17774946	39	2.2	37	91	8	132	69	4	0	25	1.07
17775006--17775305	133	2.3	130	81	8	320	49	13	12	24	1.76
17776487--17776622	71	1.9	71	83	5	177	34	23	19	22	1.97
17780371--17780650	147	1.9	144	81	4	337	41	8	7	41	1.64
17781817--17781855	16	2.4	16	91	0	60	48	2	12	35	1.55
17781793--17781857	34	1.9	34	83	0	85	46	4	15	33	1.66
17782079--17782104	13	2.0	13	100	0	52	61	7	0	30	1.24
17782215--17782269	20	2.8	19	73	10	58	54	1	3	40	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17782369--17782397	5	6.0	5	92	8	51	82	0	0	17	0.66
17783665--17783716	24	2.2	24	85	0	68	38	3	7	50	1.50
17785648--17785694	24	1.9	25	86	4	69	44	0	2	53	1.12
17790128--17790161	17	2.1	16	88	5	50	2	14	5	76	1.09
17790150--17790200	14	3.6	14	76	7	50	17	13	0	68	1.21
17790350--17790386	14	2.4	17	86	13	53	51	0	0	48	1.00
17792923--17792974	24	2.2	24	89	0	77	36	3	9	50	1.54
17793842--17793889	14	3.3	14	77	11	51	39	0	2	58	1.10
17796238--17796299	28	2.2	28	100	0	124	54	0	6	38	1.26
17799877--17799956	3	27.3	3	86	9	112	66	1	31	1	1.08
17808777--17808813	16	2.3	16	95	0	65	37	5	32	24	1.78
17808793--17808887	45	2.1	44	88	5	138	30	5	29	34	1.80
17809029--17809088	22	2.7	23	79	10	70	46	6	1	45	1.39
17809037--17809122	22	4.2	21	66	18	56	51	5	1	41	1.33
17809058--17809182	38	3.3	39	72	13	134	49	6	4	40	1.47
17811133--17811162	13	2.3	13	94	0	51	66	16	10	6	1.41
17812167--17812259	42	2.2	42	96	0	168	34	23	21	20	1.97
17812260--17812433	42	4.1	43	89	3	266	21	20	18	40	1.92
17812747--17812791	21	2.1	21	87	0	63	2	48	17	31	1.59
17818205--17818343	25	5.5	25	75	10	131	37	3	16	42	1.66
17818221--17818362	25	5.7	24	73	16	85	38	2	16	42	1.62
17818304--17818424	41	2.9	42	82	1	154	44	4	14	37	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17818330--17818359	16	1.9	15	93	6	51	40	3	13	43	1.60
17819168--17819203	17	2.1	17	94	0	63	25	13	19	41	1.88
17822526--17822555	14	2.1	14	93	0	51	30	10	13	46	1.75
17830523--17830554	13	2.5	13	94	0	55	31	3	3	62	1.26
17830522--17830563	19	2.2	19	83	8	50	38	2	4	54	1.34
17832756--17832797	20	2.3	19	84	12	52	69	4	4	21	1.26
17836416--17836603	37	5.1	37	79	11	176	40	10	11	37	1.75
17836453--17836586	19	7.2	18	75	16	114	39	8	13	38	1.76
17836416--17836586	38	4.6	39	80	12	182	40	9	12	36	1.76
17837414--17837471	12	4.7	13	77	16	52	0	24	0	75	0.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144