genome.fa.s11.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  3  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
435612--436176	46	11.8	46	79	10	560	29	16	23	30	1.96
435578--436207	97	6.5	97	89	1	868	29	15	23	30	1.96
436088--436346	118	2.2	118	85	1	367	31	13	25	29	1.94
436327--436356	15	2.0	15	100	0	60	46	13	26	13	1.80
436603--436638	15	2.3	16	90	4	56	72	8	0	19	1.10
437840--437965	23	5.5	22	74	12	94	34	3	2	58	1.29
437864--437912	17	2.8	18	81	9	57	40	2	0	57	1.10
437849--437955	46	2.3	47	85	3	146	35	4	1	57	1.30
437925--437970	23	1.9	23	86	8	65	30	4	4	60	1.35
438328--438369	21	2.0	22	81	13	52	23	2	4	69	1.20
440775--440823	21	2.5	20	83	9	64	30	0	4	65	1.11
456738--456795	29	2.0	29	96	0	107	32	13	32	20	1.92
460389--460426	19	2.1	19	85	5	51	71	5	0	23	1.07
460458--460483	5	5.2	5	100	0	52	80	19	0	0	0.71
460497--460594	27	3.6	27	83	0	115	23	29	34	12	1.91
460631--460661	3	10.3	3	100	0	62	67	0	32	0	0.91
464010--464088	30	2.7	30	76	9	90	27	18	17	35	1.94
466686--466751	15	4.6	14	74	12	53	66	3	0	30	1.06
467737--467882	27	5.4	27	89	0	211	17	14	47	21	1.82
467893--467953	12	5.1	12	77	0	50	14	4	59	21	1.55
467893--467945	24	2.2	24	82	0	70	11	3	60	24	1.47
468057--468090	15	2.2	16	89	5	52	11	0	17	70	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
476610--476669	21	2.9	21	78	11	79	73	0	26	0	0.84
476872--476905	13	2.6	13	100	0	68	23	44	32	0	1.54
476927--476994	8	9.0	8	76	7	63	80	0	19	0	0.70
476928--476994	14	4.6	14	79	17	82	80	0	19	0	0.71
476929--476994	22	3.0	21	80	14	80	80	0	19	0	0.72
477475--477523	17	2.8	17	78	3	62	30	12	10	46	1.74
477574--477711	17	7.9	17	75	8	116	31	13	10	44	1.77
477574--477671	18	5.5	18	79	4	101	29	12	11	46	1.76
477629--477746	17	6.8	17	70	13	71	29	11	11	48	1.73
477690--477729	20	2.0	20	90	9	64	40	10	10	40	1.72
477567--477729	17	9.2	17	72	14	80	34	12	10	42	1.76
480339--480478	37	3.9	35	75	7	120	45	11	12	30	1.78
480334--480483	17	8.4	17	77	8	138	44	10	13	32	1.78
480540--480588	17	2.8	17	79	14	64	44	10	14	30	1.78
480540--480597	18	3.3	17	78	7	62	41	8	12	37	1.73
481074--481113	14	2.7	14	88	11	62	0	17	0	82	0.67
481380--481438	24	2.3	26	88	8	86	0	18	1	79	0.81
481361--481441	21	4.1	20	83	10	87	1	17	1	80	0.85
481368--481442	22	3.4	22	80	14	84	0	20	1	78	0.82
481380--481438	6	9.3	6	83	9	73	0	18	1	79	0.81
481641--481697	17	3.2	18	75	12	55	7	17	54	21	1.66
482029--482105	30	2.6	30	85	0	109	44	5	19	31	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
481968--482105	59	2.3	60	81	3	145	39	6	21	31	1.79
484202--484422	112	2.0	114	83	7	283	30	19	24	25	1.98
484196--484937	115	6.5	114	76	6	501	31	18	21	27	1.97
484571--484858	113	2.5	115	80	5	298	31	18	22	27	1.97
485102--485216	7	16.0	7	70	15	65	18	1	40	40	1.61
485122--485151	15	2.0	15	100	0	60	13	0	46	40	1.43
485124--485159	15	2.5	15	90	4	56	16	0	44	38	1.48
486338--486384	22	2.1	22	96	0	85	27	8	23	40	1.83
486487--486608	44	2.8	44	98	1	235	34	12	19	33	1.89
486768--486883	36	3.3	35	68	20	96	29	6	18	45	1.75
486735--486915	71	2.5	71	98	0	344	26	4	18	50	1.67
489330--489997	132	5.1	132	94	0	1133	29	24	17	28	1.97
490110--490303	95	2.0	95	97	0	370	27	21	20	30	1.98
490005--490437	229	1.9	229	91	0	715	29	21	20	28	1.98
490205--490468	134	2.0	134	93	1	458	29	22	20	27	1.98
490461--490691	86	2.7	86	91	0	372	26	24	22	25	2.00
507962--507998	18	2.1	18	94	0	65	54	13	5	27	1.61
508053--508092	19	2.2	19	86	4	55	30	32	2	35	1.71
508192--508250	17	3.4	17	66	25	50	35	5	3	55	1.38
513042--513218	39	4.5	39	74	6	121	19	19	21	40	1.92
528760--528793	12	2.8	12	90	0	50	35	5	14	44	1.70
529444--529469	9	2.9	9	100	0	52	19	23	0	57	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
536180--536224	19	2.4	19	85	7	56	44	0	13	42	1.43
536305--536506	46	4.5	46	94	1	347	33	14	22	28	1.94
538450--538475	6	4.3	6	100	0	52	15	50	0	34	1.45
553081--553168	26	3.4	26	88	0	122	32	13	9	44	1.75
556426--556451	13	2.0	13	100	0	52	38	7	15	38	1.76
567014--567169	42	3.7	41	75	17	158	24	18	26	30	1.98
572635--572661	11	2.5	11	100	0	54	33	33	7	25	1.84
577286--577329	23	1.9	22	82	17	54	36	25	0	38	1.56
577376--577462	45	1.9	45	92	0	147	36	21	16	25	1.94
577462--577657	50	3.9	50	77	4	207	30	27	16	26	1.97
577471--577654	101	1.8	100	88	4	280	30	26	16	25	1.97
585842--586031	39	4.9	39	88	2	265	32	27	18	20	1.96
591059--591107	25	2.0	25	84	8	64	48	0	26	24	1.51
591613--591685	26	2.7	27	72	12	69	32	8	20	38	1.82
596294--596352	29	2.1	29	93	3	102	33	18	13	33	1.90
605735--605870	25	5.4	25	72	10	100	19	27	17	35	1.95
605735--605867	50	2.7	50	81	6	137	19	27	18	34	1.95
607239--607272	17	2.1	17	94	5	61	26	0	23	50	1.50
612826--612899	25	3.0	25	74	2	78	21	27	21	29	1.99
612880--612956	39	2.0	38	81	0	82	31	16	16	33	1.92
617679--617729	22	2.3	22	86	6	68	50	15	15	17	1.78
618970--619009	17	2.4	17	82	0	53	77	0	20	2	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
630557--630669	56	2.0	56	94	0	199	34	11	26	27	1.91
631859--631904	17	2.5	19	76	20	53	43	17	6	32	1.75
635570--635608	21	1.9	20	89	5	60	38	2	5	53	1.37
637269--637295	9	3.0	9	100	0	54	55	0	0	44	0.99
637275--637351	28	2.8	27	78	11	68	55	3	1	38	1.26
637311--637375	28	2.4	27	79	16	73	52	4	3	40	1.38
637357--637405	18	2.7	18	78	6	55	46	0	0	53	1.00
638803--638829	14	1.9	14	100	0	54	7	29	33	29	1.85
638817--638942	42	3.0	42	91	1	198	37	23	19	20	1.94
639320--639369	21	2.4	21	86	0	73	2	44	18	36	1.61
644886--644922	7	5.0	7	87	12	56	29	0	16	54	1.43
644893--645559	9	75.2	9	76	5	590	32	1	18	48	1.57
645666--645703	7	5.6	7	82	17	53	28	0	13	57	1.36
645651--645723	27	2.7	26	70	6	74	36	1	13	47	1.52
645651--645821	53	3.4	52	73	20	175	35	2	12	49	1.54
645715--645800	21	4.0	22	72	19	67	34	2	13	48	1.56
645761--645806	7	6.6	7	78	16	51	28	0	10	60	1.30
645761--645806	15	3.3	15	79	17	62	28	0	10	60	1.30
645619--645818	95	2.1	96	90	0	312	35	3	14	47	1.60
645912--645953	19	2.2	20	83	12	52	57	2	0	40	1.12
645940--646087	61	2.4	61	81	8	176	47	8	4	40	1.52
646018--646057	16	2.6	15	76	7	53	47	7	0	45	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
646066--646098	17	1.9	17	93	0	57	51	9	3	36	1.49
647352--647456	52	2.0	52	94	0	183	45	18	23	12	1.83
647796--647835	20	2.0	20	100	0	80	40	5	45	10	1.60
647796--647874	20	4.0	19	72	16	63	39	5	41	13	1.67
647818--647895	39	2.0	39	94	0	138	35	6	39	17	1.76
648409--648547	70	2.0	70	94	0	242	33	18	20	28	1.96
651067--651275	115	1.8	113	81	6	260	25	22	18	33	1.96
655664--655737	12	5.9	12	82	13	71	82	0	16	1	0.74
655676--655739	6	10.0	6	78	18	67	81	0	17	1	0.77
655675--655737	26	2.4	26	87	10	85	82	0	15	1	0.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144